CuGenDBv2

Gene ID	Lag0041660
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	chr13:23468124..23473434
RNA-Seq Expression	Lag0041660
Synteny	Lag0041660
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605253.1 hypothetical protein SDJN03_02570, partial [Cucurbita argyrosperma subsp. sororia]

3.2e-18

70.13

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLG D +T H+RSKR LLSLLYAYGSSLD++ ++D  L N+L FSN V MDM+QVKEVE KKN SPKMEVH+SLK E
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

XP_008457797.1 PREDICTED: uncharacterized protein LOC103497400 isoform X1 [Cucumis melo]

4.9e-19

71.43

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLGVDVKT +SRS+RILLSLLYA+GSS+D++ ++D RL+N L+ SNTVK+DM++VKEVENKKNSS K+ VH+SLKQE
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

XP_022947960.1 uncharacterized protein LOC111451686 isoform X1 [Cucurbita moschata]

2.4e-18

68.83

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLG D +T H+RSKR LLSLLYAYGSSLD+++++D  L N+L FSN + MD++QVKEVENKKN SPKMEVH+SLK E
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

XP_023534767.1 uncharacterized protein LOC111796239 isoform X1 [Cucurbita pepo subsp. pepo]

1.9e-18

70.13

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLG D +T H+RSKR LLSLLYAYGSSLD++ ++D  L N+L+ SN V MDM+QVKEVENKKN SPKMEVH+SLK E
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

XP_038900882.1 uncharacterized protein LOC120087938 isoform X1 [Benincasa hispida]

1.1e-23

83.12

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLGVDVKT HSRS+RILLSLLYAYGSS+D++ IRD RLDN L+ SNTVKMDM+ VKEVENKKNSSPK+EVHNSLKQE
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMQ5 Uncharacterized protein

2.6e-18

68.83

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLGVDVKT +SRS+RILLSLL A+GSS+D++ ++D RL+N L+ SNTVK++M+QV+EVE KKNSSPK+ +HNSLKQE
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

A0A1S3C5X2 uncharacterized protein LOC103497400 isoform X1

2.4e-19

71.43

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLGVDVKT +SRS+RILLSLLYA+GSS+D++ ++D RL+N L+ SNTVK+DM++VKEVENKKNSS K+ VH+SLKQE
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

A0A5D3BMC4 Uncharacterized protein

2.4e-19

71.43

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLGVDVKT +SRS+RILLSLLYA+GSS+D++ ++D RL+N L+ SNTVK+DM++VKEVENKKNSS K+ VH+SLKQE
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

A0A6J1G8C7 uncharacterized protein LOC111451686 isoform X1

1.2e-18

68.83

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLG D +T H+RSKR LLSLLYAYGSSLD+++++D  L N+L FSN + MD++QVKEVENKKN SPKMEVH+SLK E
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

A0A6J1L6C9 uncharacterized protein LOC111499588 isoform X1

4.5e-18

68.83

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Query:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE
        MLG D +T H+RSKR LLSLLYAYGSSLD++ ++D    N+L+FSN V MDM+QVKEVE KKN SPKMEVH+SLK E
Subjt:  MLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQE

SwissProt top hits

e value

%identity

Alignment

Q9MA85 Pentatricopeptide repeat-containing protein At3g05340

2.1e-04

39.13

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Query:  CGPQGFFYRIVEEKGLLHFGSSLHVSIIKSFEL------SSHDNRVFIANSLISMYERCGKLFDGVKAF
        CG +G+F          H G  LH SIIK+ E         H N + + NSL+S+Y +CGKL D +K F
Subjt:  CGPQGFFYRIVEEKGLLHFGSSLHVSIIKSFEL------SSHDNRVFIANSLISMYERCGKLFDGVKAF

Arabidopsis top hits

e value

%identity

Alignment

AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein

2.8e-04

39.29

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Query:  LHFGSSLHVSIIK-SFEL-SSHDNRVFIANSLISMYERCGKLFDGVKAFRTQLEVD
        LH G   HV ++K  F+  S  ++ +F+ NSLI MY +CG + +G   FR  +E D
Subjt:  LHFGSSLHVSIIK-SFEL-SSHDNRVFIANSLISMYERCGKLFDGVKAFRTQLEVD

AT3G05340.1 Tetratricopeptide repeat (TPR)-like superfamily protein

1.5e-05

39.13

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Query:  CGPQGFFYRIVEEKGLLHFGSSLHVSIIKSFEL------SSHDNRVFIANSLISMYERCGKLFDGVKAF
        CG +G+F          H G  LH SIIK+ E         H N + + NSL+S+Y +CGKL D +K F
Subjt:  CGPQGFFYRIVEEKGLLHFGSSLHVSIIKSFEL------SSHDNRVFIANSLISMYERCGKLFDGVKAF

AT3G63370.1 Tetratricopeptide repeat (TPR)-like superfamily protein

7.3e-05

26.21

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Query:  GSSLHVSIIKSFELSSHDNRVFIANSLISMYERCGKLFDGVKAFRTQLEVDFEEEMLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFS
        G  +H S++KS   S+H + +++ N+LI+MY RCGK+    +  R         +M   DV T +S  K  + +L+Y          I  G   + +  +
Subjt:  GSSLHVSIIKSFELSSHDNRVFIANSLISMYERCGKLFDGVKAFRTQLEVDFEEEMLGVDVKTRHSRSKRILLSLLYAYGSSLDEQTIRDGRLDNALKFS

Query:  NTV
        + +
Subjt:  NTV

Sequences

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CDS sequence

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ATGAGATGGCGGGATCCCTTTGTTCAAGCCCCGGAGTCAGCACTTAAGGGAACAACCTCTATACTATCCCTAATTCGGGACGCCCCCACTCGCATGCCTCTACATGGACG
ATTTAGGATCACATCGTCTATACTATCTATAAAGTGGGTCGCGTCTCGTAGTGTCTCCAGAATAAGATCTGGGTTTTCCTTCGTTCCAAGCATTGTAGAAGATGATTTTG
AATGGAGAAGACGAAGGGCAACTCGGACGACTTGTGAAGAAAGGTCGTGGGTTTTGAAGGCTTCTTCGGCATTCCGGATCTGGGTTTTGAAGGCTTGTTTAAACCTCTTC
GACATTCGTCCTCAACCATGTGGACCCCAAGGTTTCTTCTATCGAATTGTGGAAGAGAAGGGGCTCCTCCATTTTGGCTCTTCCCTCCATGTCTCCATCATCAAGAGCTT
CGAGCTCTCAAGCCATGATAATAGGGTCTTCATAGCGAACTCCCTCATCTCCATGTACGAGAGGTGCGGTAAATTGTTCGATGGAGTCAAGGCTTTTAGAACCCAATTGG
AAGTGGATTTCGAAGAAGAAATGCTGGGAGTGGATGTGAAAACAAGACACAGCCGCTCCAAAAGAATTCTTTTGTCTTTGCTCTACGCATATGGAAGCTCGCTCGACGAG
CAAACGATTCGAGATGGTCGATTAGATAATGCACTCAAATTTTCCAACACTGTAAAGATGGATATGAATCAGGTGAAAGAAGTAGAGAATAAGAAAAACTCATCACCAAA
GATGGAAGTGCATAATTCTTTGAAGCAAGAGGCAGAAAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCAGGCAGAGACGAATTTCCACTACATGAGGGTTT
CAAAGTTCTCCTACGATGATCCATTGCAAATATTTTACAAGCTACAAGATTACCCGTATTCTAGTTAA

mRNA sequence

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Protein sequence

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MRWRDPFVQAPESALKGTTSILSLIRDAPTRMPLHGRFRITSSILSIKWVASRSVSRIRSGFSFVPSIVEDDFEWRRRRATRTTCEERSWVLKASSAFRIWVLKACLNLF
DIRPQPCGPQGFFYRIVEEKGLLHFGSSLHVSIIKSFELSSHDNRVFIANSLISMYERCGKLFDGVKAFRTQLEVDFEEEMLGVDVKTRHSRSKRILLSLLYAYGSSLDE
QTIRDGRLDNALKFSNTVKMDMNQVKEVENKKNSSPKMEVHNSLKQEAEKEFRVEVEAIGHVQAETNFHYMRVSKFSYDDPLQIFYKLQDYPYSS

Lag0041660 (gene) of Sponge gourd (AG-4) v1 genome