CuGenDBv2

Gene ID	Lag0041670
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	PMD domain-containing protein
Genome location	chr13:23569377..23569973
RNA-Seq Expression	Lag0041670
Synteny	Lag0041670
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]

1.9e-45

49.2

Show/hide

Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQP   GLS +V++   G+ A  WP       +   SVE PL +   A  L+SSIH + P+    +TLG R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F F   YWEWL+  +GRN  +L + RL  AV ASLYTYD+N+D+V+AFCEAWCP+TNTLHT A ELSI LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

KAA0052363.1 hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]

2.1e-44

49.2

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Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQP   GLS +V++   G+ A  WP       +   SVE  L +   A  L+SSIH + P+    +TLG R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F FI  YWEWL+  +GRN  +L + RL  AV ASLYTYD N+D+V+AFCEAWCP+TNTLHT A ELSI LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

KAA0061098.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.2e-44

48.13

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Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQ    GLS +V++   G+ A  WP       +S  SVE PL +   A  L+S IH + P+    +T G R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F F   YWEWL+  +GRN  +L +  L  AV ASLYTYD+NND+V+AFCEAWCP+TNTLHT A ELSI+LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

KAA0065375.1 hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]

3.3e-45

49.2

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Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQP   GLS +V++   G+ A  WP       +   SVE PL +   A  L+SSIH + P+    +TLG R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F F   YWEWL+  +GRN  +L + RL  AV ASLYTYD+N+D+V+AFCEAWCP+TNTLHT A ELSI LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

TYK20969.1 hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]

2.1e-44

49.2

Show/hide

Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQP   GLS +V++   G+ A  WP       +   SVE  L +   A  L+SSIH + P+    +TLG R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F FI  YWEWL+  +GRN  +L + RL  AV ASLYTYD N+D+V+AFCEAWCP+TNTLHT A ELSI LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TX42 Uncharacterized protein

9.3e-46

49.2

Show/hide

Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQP   GLS +V++   G+ A  WP       +   SVE PL +   A  L+SSIH + P+    +TLG R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F F   YWEWL+  +GRN  +L + RL  AV ASLYTYD+N+D+V+AFCEAWCP+TNTLHT A ELSI LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

A0A5A7U8X8 PMD domain-containing protein

1.0e-44

49.2

Show/hide

Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQP   GLS +V++   G+ A  WP       +   SVE  L +   A  L+SSIH + P+    +TLG R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F FI  YWEWL+  +GRN  +L + RL  AV ASLYTYD N+D+V+AFCEAWCP+TNTLHT A ELSI LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

A0A5A7VHW8 PMD domain-containing protein

1.6e-45

49.2

Show/hide

Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQP   GLS +V++   G+ A  WP       +   SVE PL +   A  L+SSIH + P+    +TLG R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F F   YWEWL+  +GRN  +L + RL  AV ASLYTYD+N+D+V+AFCEAWCP+TNTLHT A ELSI LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

A0A5D3BXQ4 Putative mitochondrial protein

6.0e-45

48.13

Show/hide

Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQ    GLS +V++   G+ A  WP       +S  SVE PL +   A  L+S IH + P+    +T G R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F F   YWEWL+  +GRN  +L +  L  AV ASLYTYD+NND+V+AFCEAWCP+TNTLHT A ELSI+LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

A0A5D3DCE5 PMD domain-containing protein

1.0e-44

49.2

Show/hide

Query:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW
        MV F E  +S   +LV+L D NQP   GLS +V++   G+ A  WP       +   SVE  L +   A  L+SSIH + P+    +TLG R+I+G   W
Subjt:  MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFW

Query:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
         +  K+  +F FI  YWEWL+  +GRN  +L + RL  AV ASLYTYD N+D+V+AFCEAWCP+TNTLHT A ELSI LWDLW+FGG
Subjt:  ESALKISSKFLFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50750.1 Plant mobile domain protein family

6.6e-04

27.4

Show/hide

Query:  RYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG
        ++  W       +E     A + +AV+AS+Y   +N D++    E WCP T T      E ++ L D+    G
Subjt:  RYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGG

Sequences

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CDS sequence

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ATGGTGTGCTTTGCAGAACACATTGTCTCCAATAAGATGTACCTCGTTCTCTTGAGAGACAACAATCAACCCATAAGAAGCGGGCTCAGCTTCTTAGTAAAAGAGTCTAA
GACCGGTAGTCTTGCAGCCCAATGGCCCCCACCACTAATTTTGCATTCTATTTCTGATTGGTCCGTAGAGAGGCCTCTAGACCAAGATTCTAAGGCTCGATTTCTAGAAT
CTTCAATCCATACAAAAAATCCTAGTCGACATCCAGAGGTGACATTGGGATGCCGAATAATTGATGGATCAATTTTTTGGGAATCCGCATTGAAAATTTCAAGCAAATTT
CTTTTCATTCCTCGCTATTGGGAGTGGCTGGATTTTTTCATTGGTCGGAATGAAGAGGTGCTTCTGACTGCTCGTTTATTGGATGCAGTGGTGGCTTCCCTTTACACTTA
TGATCAAAACAACGATATAGTTCAGGCTTTTTGTGAAGCTTGGTGTCCCGCAACCAATACACTTCACACTCGTGCGGAAGAACTTTCAATTTTCTTATGGGATCTTTGGA
CATTTGGCGGTGATCGCTTGACAGAAGGTCGATTAATTACTACATAA

mRNA sequence

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Protein sequence

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MVCFAEHIVSNKMYLVLLRDNNQPIRSGLSFLVKESKTGSLAAQWPPPLILHSISDWSVERPLDQDSKARFLESSIHTKNPSRHPEVTLGCRIIDGSIFWESALKISSKF
LFIPRYWEWLDFFIGRNEEVLLTARLLDAVVASLYTYDQNNDIVQAFCEAWCPATNTLHTRAEELSIFLWDLWTFGGDRLTEGRLITT

Lag0041670 (gene) of Sponge gourd (AG-4) v1 genome