; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041683 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041683
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr13:23874578..23882140
RNA-Seq ExpressionLag0041683
SyntenyLag0041683
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-3245.92Show/hide
Query:  STGFSSKPGGSLVFSDVLSILE-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTAIWYR
        STGFSSKPGG LVFSD LSILE                       C+                        S + +   PRGNR SLQT E+DKT I+  
Subjt:  STGFSSKPGGSLVFSDVLSILE-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTAIWYR

Query:  VHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELLFPNRDMSWRHLMFKV
              PL TLSVL DNDAVVSAG+APLRQRRW     P    TS        L  VEIELPVPD LPTSAESS S+ STW+EL F +  +    + +KV
Subjt:  VHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELLFPNRDMSWRHLMFKV

Query:  ----------SVGSTGIVRGDDVCWLHAVFRAK
                   + S  IVRGDDVCWLHA+FRAK
Subjt:  ----------SVGSTGIVRGDDVCWLHAVFRAK

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.2e-3250.49Show/hide
Query:  GYTSTGFSSKPGGSLVFSDVLSILECTS-----------RIRS-----SIRPRGNRSSLQTGELDKTAIWYRVHTGYVPLLTLSVLRDNDAVVSAGRAPL
        G  STGFSSKPGG LVFSD LSILE              RI +     S  PRGNR SLQT ELDKT I+        PL TLSVLRDN           
Subjt:  GYTSTGFSSKPGGSLVFSDVLSILECTS-----------RIRS-----SIRPRGNRSSLQTGELDKTAIWYRVHTGYVPLLTLSVLRDNDAVVSAGRAPL

Query:  RQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELL-----------FPNRDMSWRHLMFKVSVGSTGIVRGDDVCWLH
                                   NV IELPVPD LPTSAESSGS+ STW+EL            F N+ MS  HL+F VSVGSTGIVRGDDVCWLH
Subjt:  RQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELL-----------FPNRDMSWRHLMFKVSVGSTGIVRGDDVCWLH

Query:  AVFRAK
        AVFRAK
Subjt:  AVFRAK

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-3245.92Show/hide
Query:  STGFSSKPGGSLVFSDVLSILE-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTAIWYR
        STGFSSKPGG LVFSD LSILE                       C+                        S + +   PRGNR SLQT E+DKT I+  
Subjt:  STGFSSKPGGSLVFSDVLSILE-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTAIWYR

Query:  VHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELLFPNRDMSWRHLMFKV
              PL TLSVL DNDAVVSAG+APLRQRRW     P    TS        L  VEIELPVPD LPTSAESS S+ STW+EL F +  +    + +KV
Subjt:  VHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELLFPNRDMSWRHLMFKV

Query:  ----------SVGSTGIVRGDDVCWLHAVFRAK
                   + S  IVRGDDVCWLHA+FRAK
Subjt:  ----------SVGSTGIVRGDDVCWLHAVFRAK

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.3e-3348.36Show/hide
Query:  STGFSSKPGGSLVFSDVLSILECTSRIRS-------------SIRPRGNRSSLQTGELDKTAIWYRVHTGYV--------------PLLTLSVLRDNDAV
        STGFSSKP G LVFSD LSILE     +               + PRGNRSSLQTG+LDK  I     T  +              PL TLSVLRDNDAV
Subjt:  STGFSSKPGGSLVFSDVLSILECTSRIRS-------------SIRPRGNRSSLQTGELDKTAIWYRVHTGYV--------------PLLTLSVLRDNDAV

Query:  VSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNV----EIELPVPDTLPTSAESSGSSFSTWVELLF-----PNRDMSWRHLMFKVSVGSTGIVRGD
        VS G+    +     G         NVGCTGR LH++    EIEL VPDTLPTSAESSGS+ STW+E  F     P+   +   + ++V   S GIVR +
Subjt:  VSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNV----EIELPVPDTLPTSAESSGSSFSTWVELLF-----PNRDMSWRHLMFKVSVGSTGIVRGD

Query:  DVCWLHAVFRAKL
        DVCWLHAVFRAK+
Subjt:  DVCWLHAVFRAKL

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.0e-3452.88Show/hide
Query:  GYTSTGFSSKPGGSLVFSDVLSILECTS-RIRSSIRPRGNRSSLQTGELDKTAIWYRVHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRR
        G  STGFSSKPGG LV SD LSILE      +  + PRGNR SLQTGELDKT I+         L TLSVLRDN+AV                       
Subjt:  GYTSTGFSSKPGGSLVFSDVLSILECTS-RIRSSIRPRGNRSSLQTGELDKTAIWYRVHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRR

Query:  TSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELL-----------FPNRDMSWRHLMFKVSVGSTGIVRGDDVCWLHAVFRAK
                       IELPVPDTLPTSAESSGS+ STW+EL            F N+ MS  HL+F VSVGSTGIVRGDDVCWLHAVFRAK
Subjt:  TSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELL-----------FPNRDMSWRHLMFKVSVGSTGIVRGDDVCWLHAVFRAK

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.0e-3245.92Show/hide
Query:  STGFSSKPGGSLVFSDVLSILE-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTAIWYR
        STGFSSKPGG LVFSD LSILE                       C+                        S + +   PRGNR SLQT E+DKT I+  
Subjt:  STGFSSKPGGSLVFSDVLSILE-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTAIWYR

Query:  VHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELLFPNRDMSWRHLMFKV
              PL TLSVL DNDAVVSAG+APLRQRRW     P    TS        L  VEIELPVPD LPTSAESS S+ STW+EL F +  +    + +KV
Subjt:  VHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELLFPNRDMSWRHLMFKV

Query:  ----------SVGSTGIVRGDDVCWLHAVFRAK
                   + S  IVRGDDVCWLHA+FRAK
Subjt:  ----------SVGSTGIVRGDDVCWLHAVFRAK

A0A5A7UT17 CCHC-type domain-containing protein6.0e-3350.49Show/hide
Query:  GYTSTGFSSKPGGSLVFSDVLSILECTS-----------RIRS-----SIRPRGNRSSLQTGELDKTAIWYRVHTGYVPLLTLSVLRDNDAVVSAGRAPL
        G  STGFSSKPGG LVFSD LSILE              RI +     S  PRGNR SLQT ELDKT I+        PL TLSVLRDN           
Subjt:  GYTSTGFSSKPGGSLVFSDVLSILECTS-----------RIRS-----SIRPRGNRSSLQTGELDKTAIWYRVHTGYVPLLTLSVLRDNDAVVSAGRAPL

Query:  RQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELL-----------FPNRDMSWRHLMFKVSVGSTGIVRGDDVCWLH
                                   NV IELPVPD LPTSAESSGS+ STW+EL            F N+ MS  HL+F VSVGSTGIVRGDDVCWLH
Subjt:  RQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELL-----------FPNRDMSWRHLMFKVSVGSTGIVRGDDVCWLH

Query:  AVFRAK
        AVFRAK
Subjt:  AVFRAK

A0A5D3BTP3 Reverse transcriptase1.0e-3245.92Show/hide
Query:  STGFSSKPGGSLVFSDVLSILE-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTAIWYR
        STGFSSKPGG LVFSD LSILE                       C+                        S + +   PRGNR SLQT E+DKT I+  
Subjt:  STGFSSKPGGSLVFSDVLSILE-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTAIWYR

Query:  VHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELLFPNRDMSWRHLMFKV
              PL TLSVL DNDAVVSAG+APLRQRRW     P    TS        L  VEIELPVPD LPTSAESS S+ STW+EL F +  +    + +KV
Subjt:  VHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELLFPNRDMSWRHLMFKV

Query:  ----------SVGSTGIVRGDDVCWLHAVFRAK
                   + S  IVRGDDVCWLHA+FRAK
Subjt:  ----------SVGSTGIVRGDDVCWLHAVFRAK

A0A5D3CAC6 Uncharacterized protein1.6e-3348.36Show/hide
Query:  STGFSSKPGGSLVFSDVLSILECTSRIRS-------------SIRPRGNRSSLQTGELDKTAIWYRVHTGYV--------------PLLTLSVLRDNDAV
        STGFSSKP G LVFSD LSILE     +               + PRGNRSSLQTG+LDK  I     T  +              PL TLSVLRDNDAV
Subjt:  STGFSSKPGGSLVFSDVLSILECTSRIRS-------------SIRPRGNRSSLQTGELDKTAIWYRVHTGYV--------------PLLTLSVLRDNDAV

Query:  VSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNV----EIELPVPDTLPTSAESSGSSFSTWVELLF-----PNRDMSWRHLMFKVSVGSTGIVRGD
        VS G+    +     G         NVGCTGR LH++    EIEL VPDTLPTSAESSGS+ STW+E  F     P+   +   + ++V   S GIVR +
Subjt:  VSAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNV----EIELPVPDTLPTSAESSGSSFSTWVELLF-----PNRDMSWRHLMFKVSVGSTGIVRGD

Query:  DVCWLHAVFRAKL
        DVCWLHAVFRAK+
Subjt:  DVCWLHAVFRAKL

A0A5D3CJX3 CCHC-type domain-containing protein1.4e-3452.88Show/hide
Query:  GYTSTGFSSKPGGSLVFSDVLSILECTS-RIRSSIRPRGNRSSLQTGELDKTAIWYRVHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRR
        G  STGFSSKPGG LV SD LSILE      +  + PRGNR SLQTGELDKT I+         L TLSVLRDN+AV                       
Subjt:  GYTSTGFSSKPGGSLVFSDVLSILECTS-RIRSSIRPRGNRSSLQTGELDKTAIWYRVHTGYVPLLTLSVLRDNDAVVSAGRAPLRQRRWSAGRAPLHRR

Query:  TSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELL-----------FPNRDMSWRHLMFKVSVGSTGIVRGDDVCWLHAVFRAK
                       IELPVPDTLPTSAESSGS+ STW+EL            F N+ MS  HL+F VSVGSTGIVRGDDVCWLHAVFRAK
Subjt:  TSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELL-----------FPNRDMSWRHLMFKVSVGSTGIVRGDDVCWLHAVFRAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTCAACCTAAGGAAGTTGCTCATCAAAAGAAAAAGAACCCTTTGGAAGACGTCAAGAATTTGATGCAAGCCATAGTAGAACGAGATCTTGTCATTAGTAAAAT
GGAGGCAAAACTTGATCAAATGATGAACCAAATTCAGCAAGAAAAGTTATCTAATGTCGTTGCCATGGACACACAAGAACAATGCCTGGCCATATCTCTAAGAAGTGGGA
AGCAGGAAGTAGAGAGAAAAGAAGTCAAACAAACTAGCACTAGAAGGATACTGGATGAAGATGATGATGAAAACACAGAAGAGGAGGAGAAAGCGCCGCCAGTCCCACTT
GAAAAGAAGTTCCATGAGTTCGTGGACCACTCCAGTGGATATTGCATGGTATCTCACACCCCACTATCCGAGGAGACTTTGATTGAAAGCTTCTACGAAAGGTTAAAAAT
GCTAGATTCAGTTAGTGGTGGTGATGTGCTTGGTACGACACCCAATAAGGCACGAGAGATTAGTACAAACCTAACAGAAAACACTTGGTTCCATGCCACTTCCCATGATG
AGCTAGAATGCCAAGTTTCAGATTCTGTTCCCAGTTTTGCTGCAGCACAGAATTTGCTCCCTCCAGTCGCTCAGCAGCATAATCTGCACAAAATAATTTCCAAAGCTTCC
ATTCTTCCAAATGGGTTAAATCATGGAAAGGCTCATGCAAAGCCAACCATTGCAGAATCTGTATTCAACCTGTCAACCTCTGATGTTTTAGTCGGTTTGGGCTACACAAG
CACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTCTGGAGTGCACAAGTCGAATCAGAAGCTCTATTCGGCCAAGAGGAAATAGAT
CGAGTCTACAGACCGGGGAACTAGATAAGACTGCTATATGGTACCGTGTGCACACAGGTTATGTTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTG
AGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGA
GATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGGATCAAGCTTCAGTACGTGGGTGGAGTTGTTATTTCCAAACCGAGATATGTCATGGCGAC
ACCTCATGTTCAAGGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGAGGTGGTCCGGGAGGGGCGT
CGGGACGCTGCGCGTCTTGGGCAGCAAGTCACCTCCGTTTCTGCTCCTATAAAAAGACCCCTTCCCCATGGCTCAAATAATCCCATTTTTGGGGAGCTCTCCCCTAGCTC
AATAGAGATAAAAAGCGAGAAGAATTGTGAAGAAAAAGGCGGAATTGATCGGGATTTCAAGGCTCGGGAATCGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTCAACCTAAGGAAGTTGCTCATCAAAAGAAAAAGAACCCTTTGGAAGACGTCAAGAATTTGATGCAAGCCATAGTAGAACGAGATCTTGTCATTAGTAAAAT
GGAGGCAAAACTTGATCAAATGATGAACCAAATTCAGCAAGAAAAGTTATCTAATGTCGTTGCCATGGACACACAAGAACAATGCCTGGCCATATCTCTAAGAAGTGGGA
AGCAGGAAGTAGAGAGAAAAGAAGTCAAACAAACTAGCACTAGAAGGATACTGGATGAAGATGATGATGAAAACACAGAAGAGGAGGAGAAAGCGCCGCCAGTCCCACTT
GAAAAGAAGTTCCATGAGTTCGTGGACCACTCCAGTGGATATTGCATGGTATCTCACACCCCACTATCCGAGGAGACTTTGATTGAAAGCTTCTACGAAAGGTTAAAAAT
GCTAGATTCAGTTAGTGGTGGTGATGTGCTTGGTACGACACCCAATAAGGCACGAGAGATTAGTACAAACCTAACAGAAAACACTTGGTTCCATGCCACTTCCCATGATG
AGCTAGAATGCCAAGTTTCAGATTCTGTTCCCAGTTTTGCTGCAGCACAGAATTTGCTCCCTCCAGTCGCTCAGCAGCATAATCTGCACAAAATAATTTCCAAAGCTTCC
ATTCTTCCAAATGGGTTAAATCATGGAAAGGCTCATGCAAAGCCAACCATTGCAGAATCTGTATTCAACCTGTCAACCTCTGATGTTTTAGTCGGTTTGGGCTACACAAG
CACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTCTGGAGTGCACAAGTCGAATCAGAAGCTCTATTCGGCCAAGAGGAAATAGAT
CGAGTCTACAGACCGGGGAACTAGATAAGACTGCTATATGGTACCGTGTGCACACAGGTTATGTTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTG
AGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGA
GATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGGATCAAGCTTCAGTACGTGGGTGGAGTTGTTATTTCCAAACCGAGATATGTCATGGCGAC
ACCTCATGTTCAAGGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGAGGTGGTCCGGGAGGGGCGT
CGGGACGCTGCGCGTCTTGGGCAGCAAGTCACCTCCGTTTCTGCTCCTATAAAAAGACCCCTTCCCCATGGCTCAAATAATCCCATTTTTGGGGAGCTCTCCCCTAGCTC
AATAGAGATAAAAAGCGAGAAGAATTGTGAAGAAAAAGGCGGAATTGATCGGGATTTCAAGGCTCGGGAATCGAGATGA
Protein sequenceShow/hide protein sequence
MESQPKEVAHQKKKNPLEDVKNLMQAIVERDLVISKMEAKLDQMMNQIQQEKLSNVVAMDTQEQCLAISLRSGKQEVERKEVKQTSTRRILDEDDDENTEEEEKAPPVPL
EKKFHEFVDHSSGYCMVSHTPLSEETLIESFYERLKMLDSVSGGDVLGTTPNKAREISTNLTENTWFHATSHDELECQVSDSVPSFAAAQNLLPPVAQQHNLHKIISKAS
ILPNGLNHGKAHAKPTIAESVFNLSTSDVLVGLGYTSTGFSSKPGGSLVFSDVLSILECTSRIRSSIRPRGNRSSLQTGELDKTAIWYRVHTGYVPLLTLSVLRDNDAVV
SAGRAPLRQRRWSAGRAPLHRRTSNVGCTGRALHNVEIELPVPDTLPTSAESSGSSFSTWVELLFPNRDMSWRHLMFKVSVGSTGIVRGDDVCWLHAVFRAKLEVVREGR
RDAARLGQQVTSVSAPIKRPLPHGSNNPIFGELSPSSIEIKSEKNCEEKGGIDRDFKARESR