; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041684 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041684
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr13:23909975..23910768
RNA-Seq ExpressionLag0041684
SyntenyLag0041684
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031662.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-2153.72Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + FR+N+ MNKI+YN+TTLL +LQ        KE EAN  +S+           +F P  + SKKIQK KG K K P +  +GKGK K VA +GKCFHCN
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKEKE
        VD HWKRNCPKYL +K KEKE
Subjt:  VDGHWKRNCPKYLVEKNKEKE

KAA0032768.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-2154.62Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + FR+NV MNKI+YN+TTL+ +LQ      G KE EANV HS+           +F P  + SKKIQKKKG+K K  +   +GKGKAK VA + KCFHCN
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKE
        VDGHWKRNC KYL +K K+
Subjt:  VDGHWKRNCPKYLVEKNKE

KAA0035551.1 gag/pol protein [Cucumis melo var. makuwa]4.5e-2252.8Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + F +NV MNKI+YN+TTLL +LQ      G KE E NV HS+           +F P  + SKKIQK+KG K K+P +  +GKGK K +A +GKCF+CN
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKEKEVAQD
        VDGHWKRNC KYL +K KEKE   D
Subjt:  VDGHWKRNCPKYLVEKNKEKEVAQD

KAA0039045.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-2047.83Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + F +NV MNKI+YN+TTLL +LQ      G KE EANV HSK           +F P  + SKKIQK+K  K K   + V+GKGKAK VA +GKCF C+
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKEKEVA--------QDSSS--TIYSSVSTPLPSSGGIFSSRRSG
        VDG WKRNCPKYL +K KEKE A        Q++SS   +  S  T    +G + S+R  G
Subjt:  VDGHWKRNCPKYLVEKNKEKEVA--------QDSSS--TIYSSVSTPLPSSGGIFSSRRSG

TYK23936.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-2154.62Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + FR+NV MNKI+YN+TTL+ +LQ      G KE EANV HS+           +F P  + SKKIQKKKG+K K  +   +GKGKAK VA + KCFHCN
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKE
        VDGHWKRNC KYL +K K+
Subjt:  VDGHWKRNCPKYLVEKNKE

TrEMBL top hitse value%identityAlignment
A0A5A7SKQ7 Gag/pol protein1.4e-2153.72Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + FR+N+ MNKI+YN+TTLL +LQ        KE EAN  +S+           +F P  + SKKIQK KG K K P +  +GKGK K VA +GKCFHCN
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKEKE
        VD HWKRNCPKYL +K KEKE
Subjt:  VDGHWKRNCPKYLVEKNKEKE

A0A5A7SQE8 Gag/pol protein1.1e-2154.62Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + FR+NV MNKI+YN+TTL+ +LQ      G KE EANV HS+           +F P  + SKKIQKKKG+K K  +   +GKGKAK VA + KCFHCN
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKE
        VDGHWKRNC KYL +K K+
Subjt:  VDGHWKRNCPKYLVEKNKE

A0A5A7T1U3 Gag/pol protein2.2e-2252.8Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + F +NV MNKI+YN+TTLL +LQ      G KE E NV HS+           +F P  + SKKIQK+KG K K+P +  +GKGK K +A +GKCF+CN
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKEKEVAQD
        VDGHWKRNC KYL +K KEKE   D
Subjt:  VDGHWKRNCPKYLVEKNKEKEVAQD

A0A5A7TCB7 Gag/pol protein7.0e-2147.83Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + F +NV MNKI+YN+TTLL +LQ      G KE EANV HSK           +F P  + SKKIQK+K  K K   + V+GKGKAK VA +GKCF C+
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKEKEVA--------QDSSS--TIYSSVSTPLPSSGGIFSSRRSG
        VDG WKRNCPKYL +K KEKE A        Q++SS   +  S  T    +G + S+R  G
Subjt:  VDGHWKRNCPKYLVEKNKEKEVA--------QDSSS--TIYSSVSTPLPSSGGIFSSRRSG

A0A5D3DJZ8 Gag/pol protein1.1e-2154.62Show/hide
Query:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN
        + FR+NV MNKI+YN+TTL+ +LQ      G KE EANV HS+           +F P  + SKKIQKKKG+K K  +   +GKGKAK VA + KCFHCN
Subjt:  MHFRTNVFMNKIQYNLTTLLNKLQ------GTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCN

Query:  VDGHWKRNCPKYLVEKNKE
        VDGHWKRNC KYL +K K+
Subjt:  VDGHWKRNCPKYLVEKNKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTTCGTACGAACGTTTTCATGAATAAGATTCAATATAATCTGACCACCCTTCTTAACAAGCTACAGGGAACTAAAGAAGAAGAGGCCAACGTTGTCCATTCCAA
GAAAATGTTCCAGAAGGGTTCATCCTTTGGAACTAAATTTGTACCTCACGTAACTTCTTCAAAGAAAATACAGAAGAAGAAGGGTGATAAGGAGAAGGCTCCCGCCATTA
CTGTTCAAGGCAAGGGAAAGGCCAAGGTTGTGGCCGACGAGGGAAAATGTTTCCACTGTAATGTGGATGGTCACTGGAAGAGAAACTGCCCAAAGTACCTTGTCGAGAAG
AATAAGGAAAAGGAAGTCGCCCAAGACTCATCTTCGACAATTTATTCGTCCGTCTCAACACCACTACCATCGTCTGGTGGTATCTTCTCCAGTCGTCGGTCCGGTAGTGG
CGACGGGCATGTCGATGTCCGACAGTGGTGGCGGTTCGTGGTTCTGGGTGCAGCGACGATTTGGTTCTCCTTCTTCTCGGTTTCTCCCTCTAATCTCCCCTCTCTCGCTC
GATCCTTCACTCTCAATCTCTCCCTCGCTATTTTGCAGTGTAATTTTCGGCAGATTTCAACGCTGAAGCAACAACCAGCAGCTTTTTTTCGACAAGGGTGCAGTGTGGGC
GTGGTTGCAACGTTTGTGGGACGTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATTTTCGTACGAACGTTTTCATGAATAAGATTCAATATAATCTGACCACCCTTCTTAACAAGCTACAGGGAACTAAAGAAGAAGAGGCCAACGTTGTCCATTCCAA
GAAAATGTTCCAGAAGGGTTCATCCTTTGGAACTAAATTTGTACCTCACGTAACTTCTTCAAAGAAAATACAGAAGAAGAAGGGTGATAAGGAGAAGGCTCCCGCCATTA
CTGTTCAAGGCAAGGGAAAGGCCAAGGTTGTGGCCGACGAGGGAAAATGTTTCCACTGTAATGTGGATGGTCACTGGAAGAGAAACTGCCCAAAGTACCTTGTCGAGAAG
AATAAGGAAAAGGAAGTCGCCCAAGACTCATCTTCGACAATTTATTCGTCCGTCTCAACACCACTACCATCGTCTGGTGGTATCTTCTCCAGTCGTCGGTCCGGTAGTGG
CGACGGGCATGTCGATGTCCGACAGTGGTGGCGGTTCGTGGTTCTGGGTGCAGCGACGATTTGGTTCTCCTTCTTCTCGGTTTCTCCCTCTAATCTCCCCTCTCTCGCTC
GATCCTTCACTCTCAATCTCTCCCTCGCTATTTTGCAGTGTAATTTTCGGCAGATTTCAACGCTGAAGCAACAACCAGCAGCTTTTTTTCGACAAGGGTGCAGTGTGGGC
GTGGTTGCAACGTTTGTGGGACGTTTTTAG
Protein sequenceShow/hide protein sequence
MHFRTNVFMNKIQYNLTTLLNKLQGTKEEEANVVHSKKMFQKGSSFGTKFVPHVTSSKKIQKKKGDKEKAPAITVQGKGKAKVVADEGKCFHCNVDGHWKRNCPKYLVEK
NKEKEVAQDSSSTIYSSVSTPLPSSGGIFSSRRSGSGDGHVDVRQWWRFVVLGAATIWFSFFSVSPSNLPSLARSFTLNLSLAILQCNFRQISTLKQQPAAFFRQGCSVG
VVATFVGRF