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Lag0041696 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041696
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTHUMP domain-containing protein
Genome locationchr13:24194985..24195564
RNA-Seq ExpressionLag0041696
SyntenyLag0041696
Gene Ontology termsGO:0006400 - tRNA modification (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR040183 - THUMP domain-containing protein 1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011655096.1 uncharacterized protein LOC101219243 isoform X1 [Cucumis sativus]6.4e-2064.71Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MAE EE +NGC  K   E  K  +NVA +E K MTPWEQHSAVISIPRFDYNAPSALLH C +GFLITCTI    +A +E +S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL

XP_022158307.1 uncharacterized protein LOC111024819 [Momordica charantia]2.5e-2470.59Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MAEKE ++NG QPK V E  K T+NVA + GKTMTPWEQHS VISIPRFDYNAPSALLHHCHSGFLITC+I    +A +E +S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL

XP_023553252.1 uncharacterized protein LOC111810722 isoform X1 [Cucurbita pepo subsp. pepo]3.2e-1967.06Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MAEKE+  NGC+PK   E  K  +NVA +E KTMTPWEQHSAVISIPRFDYNAPSALLHH  SGFLITC I    +A +E +S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL

XP_023553260.1 uncharacterized protein LOC111810722 isoform X2 [Cucurbita pepo subsp. pepo]3.2e-1967.06Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MAEKE+  NGC+PK   E  K  +NVA +E KTMTPWEQHSAVISIPRFDYNAPSALLHH  SGFLITC I    +A +E +S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL

XP_038892499.1 uncharacterized protein LOC120081569 isoform X1 [Benincasa hispida]9.8e-2167.06Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MAEKEE  NGC  K V E  K T+NV  +E KTMTPWEQHSAVISIPRFDYNAPSALL  C SGFLITC+I    +A +E +S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL

TrEMBL top hitse value%identityAlignment
A0A0A0KQX3 THUMP domain-containing protein3.1e-2064.71Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MAE EE +NGC  K   E  K  +NVA +E K MTPWEQHSAVISIPRFDYNAPSALLH C +GFLITCTI    +A +E +S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL

A0A5A7VFJ1 Uncharacterized protein2.1e-1675.86Show/hide
Query:  KSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI
        K   E  K  +NVA +E KTMTPWEQHSAVIS+PRFDYNAPSALLH C SGFLITCTI
Subjt:  KSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI

A0A6J1DWW8 uncharacterized protein LOC1110248191.2e-2470.59Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MAEKE ++NG QPK V E  K T+NVA + GKTMTPWEQHS VISIPRFDYNAPSALLHHCHSGFLITC+I    +A +E +S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL

A0A6J1EPS0 uncharacterized protein LOC111436464 isoform X14.4e-1967.06Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MAEKE+   GC+PK V E  K  +NVA +E KTMTPWEQHSAVISIPRFDYNAPSALLHH  SGFLITC I    +A +E +S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL

A0A6J1K4P7 uncharacterized protein LOC111490047 isoform X14.4e-1967.06Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MAEKE+   GC+PK V E  K  +NVA +E KTMTPWEQHSAVISIPRFDYNAPSALLHH  SGFLITC I    +A +E +S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09290.1 unknown protein5.4e-1751.76Show/hide
Query:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL
        MA  EE D+    +++ E         G E +T+TPWEQHS++ISIPRFDY APS+LLHH HSGFL+TC I    +A +EV+S L
Subjt:  MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTI---MNALEEVLSNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGAAAGAAGAACATGACAATGGCTGCCAGCCAAAATCTGTAGTAGAAACCCCGAAATTGACAGACAATGTCGCTGGAAGCGAAGGGAAAACAATGACGCCATG
GGAGCAGCACTCTGCTGTCATAAGCATCCCTCGCTTCGACTACAACGCACCATCTGCTCTTCTTCACCATTGCCATTCTGGATTCCTCATCACATGCACAATCATGAATG
CGCTGGAGGAGGTTCTTTCGAATCTGCCCTTTCACAAGAGGGGCCGAATTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGAAAGAAGAACATGACAATGGCTGCCAGCCAAAATCTGTAGTAGAAACCCCGAAATTGACAGACAATGTCGCTGGAAGCGAAGGGAAAACAATGACGCCATG
GGAGCAGCACTCTGCTGTCATAAGCATCCCTCGCTTCGACTACAACGCACCATCTGCTCTTCTTCACCATTGCCATTCTGGATTCCTCATCACATGCACAATCATGAATG
CGCTGGAGGAGGTTCTTTCGAATCTGCCCTTTCACAAGAGGGGCCGAATTTTGTGA
Protein sequenceShow/hide protein sequence
MAEKEEHDNGCQPKSVVETPKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIMNALEEVLSNLPFHKRGRIL