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Lag0041697 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041697
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionnucleolar protein 12
Genome locationchr13:24230687..24235931
RNA-Seq ExpressionLag0041697
SyntenyLag0041697
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596731.1 Inositol-tetrakisphosphate 1-kinase 5, partial [Cucurbita argyrosperma subsp. sororia]7.1e-1163.93Show/hide
Query:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S  + L        GNHIRVDRACP RKK  VGS+PIYDP +TVFVGNLPFDVK
Subjt:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
KAG7028265.1 nop12, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-1163.93Show/hide
Query:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S  + L        GNHIRVDRACP RKK  VGS+PIYDP +TVFVGNLPFDVK
Subjt:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
XP_022145377.1 nucleolar protein 12 [Momordica charantia]4.2e-1187.5Show/hide
Query:  GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        GNHIRVDRACP RKK  VGSAPIYDP +TVFVGNLPFDVK
Subjt:  GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
XP_022922379.1 nucleolar protein 12 [Cucurbita moschata]7.1e-1163.93Show/hide
Query:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S  + L        GNHIRVDRACP RKK  VGS+PIYDP +TVFVGNLPFDVK
Subjt:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
XP_023005336.1 nucleolar protein 12 [Cucurbita maxima]7.1e-1163.93Show/hide
Query:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S  + L        GNHIRVDRACP RKK  VGS+PIYDP +TVFVGNLPFDVK
Subjt:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
TrEMBL top hitse value%identityAlignment
A0A0A0L184 Uncharacterized protein3.8e-1060.66Show/hide
Query:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S  + L        GNHIRVDRACP  KK  VG+ PIYDP +TVFVGNLPFDVK
Subjt:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
A0A5A7UHL8 Nucleolar protein 123.8e-1060.66Show/hide
Query:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S  + L        GNHIRVDRACP  KK  VG+ PIYDP +TVFVGNLPFDVK
Subjt:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
A0A6J1CWE3 nucleolar protein 122.0e-1187.5Show/hide
Query:  GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        GNHIRVDRACP RKK  VGSAPIYDP +TVFVGNLPFDVK
Subjt:  GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
A0A6J1E378 nucleolar protein 123.4e-1163.93Show/hide
Query:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S  + L        GNHIRVDRACP RKK  VGS+PIYDP +TVFVGNLPFDVK
Subjt:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
A0A6J1KUP0 nucleolar protein 123.4e-1163.93Show/hide
Query:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S  + L        GNHIRVDRACP RKK  VGS+PIYDP +TVFVGNLPFDVK
Subjt:  IVFGIEKSNLSML--------GNHIRVDRACPLRKKFNVGSAPIYDPNKTVFVGNLPFDVK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38020.1 tRNA/rRNA methyltransferase (SpoU) family protein2.5e-0647.46Show/hide
Query:  LSACAARKTPAVLLESSRHRSESYSPALFLGLHCVKLRFNSSYRHFHGSVLVVGATPIR
        LS   + K+PA  +    H +   S       HC+KLR +SSYRH HGSVLVVG  PIR
Subjt:  LSACAARKTPAVLLESSRHRSESYSPALFLGLHCVKLRFNSSYRHFHGSVLVVGATPIR
AT5G46840.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.4e-1053.23Show/hide
Query:  IVFGIEKS-------NLSML-GNHIRVDRACPLRKK-FNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S       N+S++ GNH+RVDRACP RKK        +YDP +TVF+GNLPFDVK
Subjt:  IVFGIEKS-------NLSML-GNHIRVDRACPLRKK-FNVGSAPIYDPNKTVFVGNLPFDVK
AT5G46840.2 RNA-binding (RRM/RBD/RNP motifs) family protein8.4e-1053.23Show/hide
Query:  IVFGIEKS-------NLSML-GNHIRVDRACPLRKK-FNVGSAPIYDPNKTVFVGNLPFDVK
        +VF  E+S       N+S++ GNH+RVDRACP RKK        +YDP +TVF+GNLPFDVK
Subjt:  IVFGIEKS-------NLSML-GNHIRVDRACPLRKK-FNVGSAPIYDPNKTVFVGNLPFDVK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCAAAGAATCAACACAACCCATTCTTGCTGTCTGCTTGTGCTGCTAGAAAAACGCCGGCAGTACTATTGGAAAGTAGTCGACATCGGTCCGAGTCATATTCTCC
AGCTTTGTTTTTAGGTTTACACTGCGTTAAACTCCGCTTCAATTCCTCTTATCGCCACTTTCATGGCTCTGTCCTTGTAGTCGGTGCTACCCCAATAAGGTCGCATCTTA
ATCCTTTACTTATCCTCCAAAATTTATGGGTTCTGTTCTTAATTGTGTTTGGGATTGAAAAATCGAATTTGTCTATGCTAGGAAATCATATACGTGTTGACAGGGCATGC
CCACTGCGTAAAAAGTTCAATGTAGGAAGTGCTCCCATCTACGATCCTAACAAAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGTTGTTACAAATATATCAAA
AATATTCCTCAAGGATACTGAAGCACCTGCTGCAATAAATTGGAAATATACTTACTGCAATAAATCGATTCCAAAGATTACCCCATCGGCTTTTATAGGCTTATTGTTTG
TTGGATTGTATCCTATTAGAGGTGATGAAGATTACTACGAATCGGGTGATGCTGAGGAGGAGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCAAAGAATCAACACAACCCATTCTTGCTGTCTGCTTGTGCTGCTAGAAAAACGCCGGCAGTACTATTGGAAAGTAGTCGACATCGGTCCGAGTCATATTCTCC
AGCTTTGTTTTTAGGTTTACACTGCGTTAAACTCCGCTTCAATTCCTCTTATCGCCACTTTCATGGCTCTGTCCTTGTAGTCGGTGCTACCCCAATAAGGTCGCATCTTA
ATCCTTTACTTATCCTCCAAAATTTATGGGTTCTGTTCTTAATTGTGTTTGGGATTGAAAAATCGAATTTGTCTATGCTAGGAAATCATATACGTGTTGACAGGGCATGC
CCACTGCGTAAAAAGTTCAATGTAGGAAGTGCTCCCATCTACGATCCTAACAAAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGTTGTTACAAATATATCAAA
AATATTCCTCAAGGATACTGAAGCACCTGCTGCAATAAATTGGAAATATACTTACTGCAATAAATCGATTCCAAAGATTACCCCATCGGCTTTTATAGGCTTATTGTTTG
TTGGATTGTATCCTATTAGAGGTGATGAAGATTACTACGAATCGGGTGATGCTGAGGAGGAGGTCTGA
Protein sequenceShow/hide protein sequence
MVSKNQHNPFLLSACAARKTPAVLLESSRHRSESYSPALFLGLHCVKLRFNSSYRHFHGSVLVVGATPIRSHLNPLLILQNLWVLFLIVFGIEKSNLSMLGNHIRVDRAC
PLRKKFNVGSAPIYDPNKTVFVGNLPFDVKVVTNISKIFLKDTEAPAAINWKYTYCNKSIPKITPSAFIGLLFVGLYPIRGDEDYYESGDAEEEV