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Lag0041723 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041723
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr13:25241084..25243152
RNA-Seq ExpressionLag0041723
SyntenyLag0041723
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEX02996.1 reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]3.2e-1549Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD-------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEFQSKYP
        +IL+AVDY+SKWV+A A   +DV+ V + L+S +F+RFG PRA++SD        GPF + +VFP G + L  + +G  FKVNG RVKHY+G +  SK P
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD-------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEFQSKYP

GEZ91765.1 reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]1.2e-1442.5Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD--------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEF-QSK
        +IL+AV+Y+SKWVEA A   +D + V + L+S +F RFG+PRA++SD         GPF + +VF  G + L  + +G  FKVNG R+KHY+G +  Q  
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD--------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEF-QSK

Query:  YPSLRIRRLCSKSYGGANRP
        YP   + R  S S+  A+ P
Subjt:  YPSLRIRRLCSKSYGGANRP

XP_016688910.2 uncharacterized protein LOC107906435 [Gossypium hirsutum]8.3e-1649.44Show/hide
Query:  KWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGP--------FIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEFQSK
        KWVEA+A  + D KTV ++   HI TRFGTP+AL+SD+G         F V++VFP+G + +QD +D   FKVNGQR+KHY+G   Q +
Subjt:  KWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGP--------FIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEFQSK

XP_024042827.1 uncharacterized protein LOC112099637 [Citrus clementina]5.4e-1551.65Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEG--------PFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHY
        +IL+AVDYVSKWVEAI C  +D + VA+ L+S+I +RFG PR ++SD G        PFIV   FP GAI +++ K+  +FKVNGQR+K +
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEG--------PFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHY

XP_028753407.1 uncharacterized protein LOC114712997 [Prosopis alba]7.5e-1752.87Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEE
        +IL+AVDYV KWVE  AC  SDVK V + L+ +IFTRFG P+A+++D GPF V++   +GA+ L+++K G  F+ NG R+KHYWG +
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEE

TrEMBL top hitse value%identityAlignment
A0A1U8JF45 uncharacterized protein LOC1079064352.0e-1548.31Show/hide
Query:  KWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGP--------FIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEFQSK
        KWVE +A  + D KTV ++   HI TRFGTP+AL+SD+G         F V++VFP+G + +QD +D   FKVNGQR+KHY+G   Q +
Subjt:  KWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGP--------FIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEFQSK

A0A699HG85 Reverse transcriptase domain-containing protein7.6e-1551.72Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEE
        +IL+ V+Y+SKWVEA A   +D + V + L+S +F+RFGTP+A++SD GPFI+ EV+P G   L    DG  FKVN  R+KHY GE+
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEE

A0A699IWH2 Reverse transcriptase domain-containing protein (Fragment)5.8e-1542.5Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD--------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEF-QSK
        +IL+AV+Y+SKWVEA A   +D + V + L+S +F RFG+PRA++SD         GPF + +VF  G + L  + +G  FKVNG R+KHY+G +  Q  
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD--------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEF-QSK

Query:  YPSLRIRRLCSKSYGGANRP
        YP   + R  S S+  A+ P
Subjt:  YPSLRIRRLCSKSYGGANRP

A0A6L2K457 Reverse transcriptase1.1e-1348.39Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD--------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWG
        +IL+AVDY+SKWVEA A   +D + V + L+S +F RFG PRA++SD         GPF + +VFP G + L  + +G  FKVNG R+KHY+G
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD--------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWG

A0A6L2M4C7 Reverse transcriptase (Fragment)1.1e-1348.39Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD--------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWG
        +IL+AVDY+SKWVEA A   +D + V + L+S +F RFG PRA++SD         GPF + +VFP G + L  + +G  FKVNG R+KHY+G
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSD--------EGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWG

SwissProt top hitse value%identityAlignment
P10272 Gag-Pol polyprotein3.4e-0441.07Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGPFIVLEV
        ++L+ VD  S WVEA    Q     VA+ +   IF RFG P+ + SD GP  V +V
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGPFIVLEV

P31792 Pol polyprotein (Fragment)1.2e-0440.62Show/hide
Query:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGPFIVLEVFPNGAITL
        ++L+ VD  S WVEA    Q     VA+ +   IF RFG P+ + SD GP  V +V    A TL
Subjt:  FILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGPFIVLEVFPNGAITL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTTTTTTTTATCTTATTGGCAGTTGATTATGTGTCCAAGTGGGTGGAGGCCATTGCATGCCATCAGAGTGATGTCAAGACAGTAGCAAGGGTTCTTCAATCGCA
CATCTTTACGCGGTTTGGGACACCTAGGGCTCTAGTGAGTGATGAGGGACCATTTATTGTGCTTGAGGTTTTCCCCAATGGAGCAATTACTTTGCAGGATGAAAAAGATG
GGAGAGTGTTCAAGGTGAATGGGCAGCGTGTGAAGCATTATTGGGGTGAGGAGTTTCAGTCGAAATATCCTTCCCTAAGGATCAGAAGGTTGTGCAGCAAAAGTTATGGT
GGAGCAAATCGTCCGAATAGAAGGGTAAATTGCATGAGTCATCTGATGAGGCCACGTGTCATCAACAATCATCTAAAGGCTTCAATGATGGACAACACATCAATTTTACC
ATGGGCGTTTGGAATCCACGATTTTACCGTTGCTAGATTCAAATTTCAGGCTACATTAAACGTTCAGGAGGCTCGTGTTGAGGTTATCATGCCTGAACCTTCGAGACGGC
GCCGCATTAAGCGAAAGCTGGGCGCGTTTAGGACTGATACCCCGTCGCCTCCATCATCGGATTCCGAGAAGAAAGGCAGAGCGAAAGGAACGAGAGAAAAAAAGGAAGTG
AAAATAAGGCAAATGAAGAAGAAGCAAGGAAGGCAAAGAAGAGTGTTTGCGCGAACAAGAGAAACAAGGGCAAAGGAATTGCCGAAGCATCGGGTGAGATTGAGGAGCCA
AGGTGATTTGCCTAGGTTCTTGGAGTCTGGAATAGCGAGCCTTGGGTGGAGGCAGTTTTGTGCGAAGCCTGATCCTGTCAATGCCAACATCGTTCGGGAATTCTACGCTA
ATCTTGACGTTAAGGATATTTTGAAGTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATTTTTTTTTATCTTATTGGCAGTTGATTATGTGTCCAAGTGGGTGGAGGCCATTGCATGCCATCAGAGTGATGTCAAGACAGTAGCAAGGGTTCTTCAATCGCA
CATCTTTACGCGGTTTGGGACACCTAGGGCTCTAGTGAGTGATGAGGGACCATTTATTGTGCTTGAGGTTTTCCCCAATGGAGCAATTACTTTGCAGGATGAAAAAGATG
GGAGAGTGTTCAAGGTGAATGGGCAGCGTGTGAAGCATTATTGGGGTGAGGAGTTTCAGTCGAAATATCCTTCCCTAAGGATCAGAAGGTTGTGCAGCAAAAGTTATGGT
GGAGCAAATCGTCCGAATAGAAGGGTAAATTGCATGAGTCATCTGATGAGGCCACGTGTCATCAACAATCATCTAAAGGCTTCAATGATGGACAACACATCAATTTTACC
ATGGGCGTTTGGAATCCACGATTTTACCGTTGCTAGATTCAAATTTCAGGCTACATTAAACGTTCAGGAGGCTCGTGTTGAGGTTATCATGCCTGAACCTTCGAGACGGC
GCCGCATTAAGCGAAAGCTGGGCGCGTTTAGGACTGATACCCCGTCGCCTCCATCATCGGATTCCGAGAAGAAAGGCAGAGCGAAAGGAACGAGAGAAAAAAAGGAAGTG
AAAATAAGGCAAATGAAGAAGAAGCAAGGAAGGCAAAGAAGAGTGTTTGCGCGAACAAGAGAAACAAGGGCAAAGGAATTGCCGAAGCATCGGGTGAGATTGAGGAGCCA
AGGTGATTTGCCTAGGTTCTTGGAGTCTGGAATAGCGAGCCTTGGGTGGAGGCAGTTTTGTGCGAAGCCTGATCCTGTCAATGCCAACATCGTTCGGGAATTCTACGCTA
ATCTTGACGTTAAGGATATTTTGAAGTTATAG
Protein sequenceShow/hide protein sequence
MAFFFILLAVDYVSKWVEAIACHQSDVKTVARVLQSHIFTRFGTPRALVSDEGPFIVLEVFPNGAITLQDEKDGRVFKVNGQRVKHYWGEEFQSKYPSLRIRRLCSKSYG
GANRPNRRVNCMSHLMRPRVINNHLKASMMDNTSILPWAFGIHDFTVARFKFQATLNVQEARVEVIMPEPSRRRRIKRKLGAFRTDTPSPPSSDSEKKGRAKGTREKKEV
KIRQMKKKQGRQRRVFARTRETRAKELPKHRVRLRSQGDLPRFLESGIASLGWRQFCAKPDPVNANIVREFYANLDVKDILKL