; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041729 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041729
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr13:25475077..25475595
RNA-Seq ExpressionLag0041729
SyntenyLag0041729
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]4.9e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

TYK04936.1 F15O4.13 [Cucumis melo var. makuwa]4.9e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

TYK11702.1 F15O4.13 [Cucumis melo var. makuwa]4.9e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.9e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]4.9e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

TrEMBL top hitse value%identityAlignment
A0A5D3BWE8 F15O4.132.4e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

A0A5D3C3D3 F15O4.132.4e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

A0A5D3CK70 F15O4.132.4e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

A0A5D3DGA7 Transposon Ty3-I Gag-Pol polyprotein2.4e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

A0A5D3DRJ1 F15O4.132.4e-5066.28Show/hide
Query:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF
        M+ELMRE+RQERRA QQ EVR FQEDEGMFDL+AHERQLG                                            DSETYLQW  KIEHVF
Subjt:  MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLG--------------------------------------------DSETYLQWAMKIEHVF

Query:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR
        DCNTFSENKKMKL IAEFTN+ SEWYHYLKSERR KEEDPIETWEELKE MRKRFVPKHYERDLKTKLQ+LR
Subjt:  DCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKRFVPKHYERDLKTKLQALR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAATTGATGAGGGAAGATAGACAAGAAAGGAGGGCACATCAACAAATGGAAGTACGAGCATTCCAAGAAGATGAAGGTATGTTTGACTTAGATGCACATGAGAG
ACAGCTTGGAGATTCAGAGACATATTTGCAATGGGCAATGAAGATAGAACATGTGTTTGATTGCAACACATTTAGTGAGAATAAGAAGATGAAACTTGTCATTGCCGAAT
TCACCAATCATGTATCTGAATGGTATCATTATCTCAAGTCCGAGAGAAGGAGTAAAGAGGAGGATCCAATAGAAACTTGGGAAGAACTTAAAGAAGTCATGAGGAAAAGG
TTTGTCCCAAAACATTATGAAAGAGATTTGAAAACTAAATTGCAAGCTTTGAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGAATTGATGAGGGAAGATAGACAAGAAAGGAGGGCACATCAACAAATGGAAGTACGAGCATTCCAAGAAGATGAAGGTATGTTTGACTTAGATGCACATGAGAG
ACAGCTTGGAGATTCAGAGACATATTTGCAATGGGCAATGAAGATAGAACATGTGTTTGATTGCAACACATTTAGTGAGAATAAGAAGATGAAACTTGTCATTGCCGAAT
TCACCAATCATGTATCTGAATGGTATCATTATCTCAAGTCCGAGAGAAGGAGTAAAGAGGAGGATCCAATAGAAACTTGGGAAGAACTTAAAGAAGTCATGAGGAAAAGG
TTTGTCCCAAAACATTATGAAAGAGATTTGAAAACTAAATTGCAAGCTTTGAGGTAA
Protein sequenceShow/hide protein sequence
MMELMREDRQERRAHQQMEVRAFQEDEGMFDLDAHERQLGDSETYLQWAMKIEHVFDCNTFSENKKMKLVIAEFTNHVSEWYHYLKSERRSKEEDPIETWEELKEVMRKR
FVPKHYERDLKTKLQALR