; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041732 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041732
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr13:25626623..25627366
RNA-Seq ExpressionLag0041732
SyntenyLag0041732
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006485824.1 uncharacterized protein LOC102613298 [Citrus sinensis]1.2e-2733.74Show/hide
Query:  EDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFDR
        E+L+ K    +L SEED +      + +  E  +  CLV K+L    +  +  R  M+  WR  +ET+V+  G+N F+ KF S  E  R+   GP  FDR
Subjt:  EDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFDR

Query:  SLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK----------------
        SL+V+   +    +    F+ A FW+QI NIP+  M +++  E+GGR+G V+ V  DDA E +G  +RVR+ VN  +PL + L                 
Subjt:  SLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK----------------

Query:  --------CGFIGHSLRECSISILDKPACRNDE--YGDWLRVE
                CG IGH  REC    LD      D+  YG W+R +
Subjt:  --------CGFIGHSLRECSISILDKPACRNDE--YGDWLRVE

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]7.2e-4139.51Show/hide
Query:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD
        M+++ D W +F  T++E+E        P+L+ D ++LC+V K+ T  +I+ +A R VM+SVWRVH  TR +  G N +V+ F S+ E +RV +SGP TF+
Subjt:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD

Query:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK---------------
        +SL+V+T   A      ++F+  +FW+QI NIP + +S +MA  LG ++G VE + GD AD W GP +RVRV+++ +KPLRRG+K               
Subjt:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK---------------

Query:  ---------CGFIGHSLRECSISILDKPACRNDEYGDWLRVEL
                 CG IGHS REC            ++YGDWLR  L
Subjt:  ---------CGFIGHSLRECSISILDKPACRNDEYGDWLRVEL

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]9.7e-3038.92Show/hide
Query:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD
        M+++ + W NF+LT E++E        PL++ + ++   V K+ T  +I+ +AFR VM+S+W+VH  T ++  G N +V+ F S+ E NRV  SGP +F+
Subjt:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD

Query:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK
         SL+V+T   A      ++F+  + W+QI  IP + M + MA  LG R+G VE +  + + EW GP +RVRVQ++ +KP +RGLK
Subjt:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]1.8e-3136.99Show/hide
Query:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD
        M+D+   W NF+L  EE++     +  P+L+ D I+LC V K+    +I  +AF  VM+ VW++H  TR++  G N +V+ F ++ E  RVF+ GP TFD
Subjt:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD

Query:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK---------------
        +SL+++    A      +  S  +FW+QI  I  + M++ MA  LG R+G VE V G  + +WV P + VRV++N  KPLRRGLK               
Subjt:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK---------------

Query:  ---------CGFIGHSLRE
                 CG +GHS+RE
Subjt:  ---------CGFIGHSLRE

XP_024035600.1 uncharacterized protein LOC112096408 [Citrus clementina]1.8e-2834.16Show/hide
Query:  EDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFDR
        E+L+ K    +L SEED +      + +  E  +  CLV K+L    +  +  R  M+  WR  +ET+V+  G+N F+ KF S  E  R+   GP  FDR
Subjt:  EDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFDR

Query:  SLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK----------------
        SL+V+T  +    +    F+ A FW+QI NIP+  M +++  E+GGR+G V+ V  DDA E +G  +RVR+ VN  +PL + L                 
Subjt:  SLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK----------------

Query:  --------CGFIGHSLRECSISILDKPACRNDE--YGDWLRVE
                CG IGH  REC    LD      D+  YG W+R +
Subjt:  --------CGFIGHSLRECSISILDKPACRNDE--YGDWLRVE

TrEMBL top hitse value%identityAlignment
A0A1S8AC25 CCHC-type domain-containing protein (Fragment)6.6e-2431.4Show/hide
Query:  EDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFDR
        E+L+ +     L+ EE       + + +  E  +  CLV KVL   +++ +  +  M+ VWR  RE ++++ GEN F+ KF S ++   +   GP  FDR
Subjt:  EDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFDR

Query:  SLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK----------------
        +LI +T       +    FS  SFW+QI ++P+  MS+ MAAELG  +G VE V  D A E  G  +R+R+ V+  KPL++ ++                
Subjt:  SLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK----------------

Query:  ----------CGFIGHSLRECSISILDKPACRND-EYGDWLR
                  CG IGH  REC      K   +++  YG WL+
Subjt:  ----------CGFIGHSLRECSISILDKPACRND-EYGDWLR

A0A6J1D765 uncharacterized protein LOC1110179023.5e-4139.51Show/hide
Query:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD
        M+++ D W +F  T++E+E        P+L+ D ++LC+V K+ T  +I+ +A R VM+SVWRVH  TR +  G N +V+ F S+ E +RV +SGP TF+
Subjt:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD

Query:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK---------------
        +SL+V+T   A      ++F+  +FW+QI NIP + +S +MA  LG ++G VE + GD AD W GP +RVRV+++ +KPLRRG+K               
Subjt:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK---------------

Query:  ---------CGFIGHSLRECSISILDKPACRNDEYGDWLRVEL
                 CG IGHS REC            ++YGDWLR  L
Subjt:  ---------CGFIGHSLRECSISILDKPACRNDEYGDWLRVEL

A0A6J1DP89 uncharacterized protein LOC1110229324.7e-3038.92Show/hide
Query:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD
        M+++ + W NF+LT E++E        PL++ + ++   V K+ T  +I+ +AFR VM+S+W+VH  T ++  G N +V+ F S+ E NRV  SGP +F+
Subjt:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD

Query:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK
         SL+V+T   A      ++F+  + W+QI  IP + M + MA  LG R+G VE +  + + EW GP +RVRVQ++ +KP +RGLK
Subjt:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK

A0A6J1DU55 uncharacterized protein LOC1110231356.6e-2430.74Show/hide
Query:  EDLVDKWINFSLTSEEDEVFKAPDTIPL-LSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD
        E+L+  W  F LTSEEDE+    D   + ++E  +   LV K+L    I+ D    V+   W+V  +  V+  G+N F+  F    ++NRV  +GP  FD
Subjt:  EDLVDKWINFSLTSEEDEVFKAPDTIPL-LSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD

Query:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVG-LVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK--------------
        ++LIV+    +   ++ L F+  +FW+ + ++PM ++++ MA  LG  +G  V+    +    W G  +R+RV ++  KPLRRG+K              
Subjt:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVG-LVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK--------------

Query:  -----------CGFIGHSLRECSISIL--DKPACRNDEYGDWLR
                   CG IGHS  +C    L     +    EYG WLR
Subjt:  -----------CGFIGHSLRECSISIL--DKPACRNDEYGDWLR

A0A6J1DVS4 uncharacterized protein LOC1110235558.6e-3236.99Show/hide
Query:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD
        M+D+   W NF+L  EE++     +  P+L+ D I+LC V K+    +I  +AF  VM+ VW++H  TR++  G N +V+ F ++ E  RVF+ GP TFD
Subjt:  MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFD

Query:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK---------------
        +SL+++    A      +  S  +FW+QI  I  + M++ MA  LG R+G VE V G  + +WV P + VRV++N  KPLRRGLK               
Subjt:  RSLIVMTILIAYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLK---------------

Query:  ---------CGFIGHSLRE
                 CG +GHS+RE
Subjt:  ---------CGFIGHSLRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding9.8e-0425.26Show/hide
Query:  FSTASFWLQILNIPMKYMSRQMAAELGGRVGL-VEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLKCGFIGHSLRECSISILDKPACRNDEYGD
        F    FW+QI  IP+++++ ++   +G R+GL +E  +G D            ++  + K       CG + H   EC  S    P   +D+  D
Subjt:  FSTASFWLQILNIPMKYMSRQMAAELGGRVGL-VEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLKCGFIGHSLRECSISILDKPACRNDEYGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATCTTGTTGATAAATGGATAAACTTTTCGCTTACGTCTGAGGAAGATGAGGTGTTTAAGGCTCCTGATACAATTCCCCTCCTTTCCGAGGACACCATCCGATT
GTGCCTGGTTTGTAAAGTCCTCACCTGCCACAAGATTAACACGGATGCCTTCCGCTTCGTCATGGAGAGTGTCTGGCGGGTACACCGGGAGACCCGTGTCGACCGAGGAG
GTGAGAACACGTTTGTGGTAAAATTCTGGTCTGTTATGGAACTGAATCGAGTTTTCAATTCGGGTCCTTCGACTTTTGATAGGAGTTTGATTGTTATGACTATCCTGATA
GCTTATGTCATCCTGACTTTGCTATCCTTTTCTACTGCTTCCTTCTGGTTACAAATTCTTAACATTCCTATGAAGTACATGTCTAGACAGATGGCGGCAGAGTTGGGAGG
TAGGGTGGGCCTAGTGGAAGCAGTTGTGGGAGACGACGCTGACGAGTGGGTTGGTCCAATGATGAGAGTTCGAGTCCAAGTGAATTTTGCCAAACCGCTGCGCCGAGGCC
TAAAATGTGGGTTTATTGGCCATTCGTTGCGCGAGTGTTCGATCTCCATTCTAGACAAGCCAGCTTGCCGTAATGATGAGTATGGGGATTGGTTGCGTGTCGAGCTGTGG
GAAACCCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATCTTGTTGATAAATGGATAAACTTTTCGCTTACGTCTGAGGAAGATGAGGTGTTTAAGGCTCCTGATACAATTCCCCTCCTTTCCGAGGACACCATCCGATT
GTGCCTGGTTTGTAAAGTCCTCACCTGCCACAAGATTAACACGGATGCCTTCCGCTTCGTCATGGAGAGTGTCTGGCGGGTACACCGGGAGACCCGTGTCGACCGAGGAG
GTGAGAACACGTTTGTGGTAAAATTCTGGTCTGTTATGGAACTGAATCGAGTTTTCAATTCGGGTCCTTCGACTTTTGATAGGAGTTTGATTGTTATGACTATCCTGATA
GCTTATGTCATCCTGACTTTGCTATCCTTTTCTACTGCTTCCTTCTGGTTACAAATTCTTAACATTCCTATGAAGTACATGTCTAGACAGATGGCGGCAGAGTTGGGAGG
TAGGGTGGGCCTAGTGGAAGCAGTTGTGGGAGACGACGCTGACGAGTGGGTTGGTCCAATGATGAGAGTTCGAGTCCAAGTGAATTTTGCCAAACCGCTGCGCCGAGGCC
TAAAATGTGGGTTTATTGGCCATTCGTTGCGCGAGTGTTCGATCTCCATTCTAGACAAGCCAGCTTGCCGTAATGATGAGTATGGGGATTGGTTGCGTGTCGAGCTGTGG
GAAACCCAGTGA
Protein sequenceShow/hide protein sequence
MEDLVDKWINFSLTSEEDEVFKAPDTIPLLSEDTIRLCLVCKVLTCHKINTDAFRFVMESVWRVHRETRVDRGGENTFVVKFWSVMELNRVFNSGPSTFDRSLIVMTILI
AYVILTLLSFSTASFWLQILNIPMKYMSRQMAAELGGRVGLVEAVVGDDADEWVGPMMRVRVQVNFAKPLRRGLKCGFIGHSLRECSISILDKPACRNDEYGDWLRVELW
ETQ