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Lag0041733 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041733
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr13:25664600..25667053
RNA-Seq ExpressionLag0041733
SyntenyLag0041733
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]1.5e-1229.19Show/hide
Query:  VKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM-------------------------------
        V+ K  G  ++ +QRR  ++  + + N+ ++K K+ KF+G T+ +E+I+WE++V++ F C     E+K+                               
Subjt:  VKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM-------------------------------

Query:  --------------------TTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETK
                            T MA+F  GL KEI   +DLQ Y D+++M++LAIK+EK    + TRY   KP S+ +SS +KE K
Subjt:  --------------------TTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETK

KAG2411297.1 hypothetical protein I3760_Q013700, partial [Carya illinoinensis]2.3e-0830.59Show/hide
Query:  GKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM---------------------------------
        G+  G R +   RRN R    VD +L S+K K+P F G T+ + ++EWE++++  F C    EEKKM                                 
Subjt:  GKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM---------------------------------

Query:  ---------------------TTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKST-RYT
                              TMARF  GL +EIA +++LQ Y +++ MV++A+K+E+ L+RK T RYT
Subjt:  ---------------------TTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKST-RYT

RVW44855.1 hypothetical protein CK203_087056 [Vitis vinifera]3.2e-1029.63Show/hide
Query:  LHHKEYWEVKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKK---------------MTTMARFFR
        L+H+  + ++G+  G  F+   R       + D NL ++K K+P F G  + + ++EWE+ V+  F C    EEKK                 TM RF  
Subjt:  LHHKEYWEVKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKK---------------MTTMARFFR

Query:  GLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTR-YTKPKPISNIHSSLEKETKIIIE
        GL ++IA +++LQ Y +L+ MV++AIK+E+ L++K TR +  P   ++   ++ K+ +++ +
Subjt:  GLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTR-YTKPKPISNIHSSLEKETKIIIE

XP_022159097.1 uncharacterized protein LOC111025539 [Momordica charantia]1.2e-1227.95Show/hide
Query:  HRSMEQMTMQFEKLVARIK-------SMEKQPTYLIQKERSNPLHHKE---------YWEVKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYG
        +R +E M  Q E+L+AR+        +  +QP  ++++E       ++           E +G    G F+  +++  R+ + VD    ++K K PKF+G
Subjt:  HRSMEQMTMQFEKLVARIK-------SMEKQPTYLIQKERSNPLHHKE---------YWEVKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYG

Query:  STNSKEHIEWERQVDHFFVCCTLCEEKK--------------------------------------------------MTTMARFFRGLKKEIAALLDLQ
        ++NS++++EWE++ +H F    L EEKK                                                    TMARF  GL  E+A  +DLQ
Subjt:  STNSKEHIEWERQVDHFFVCCTLCEEKK--------------------------------------------------MTTMARFFRGLKKEIAALLDLQ

Query:  LYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETKIIIEKLDSKF
        +Y D++++V+ ++KIEK +QR+ +RY   KP SN  SS +K+ K      DSKF
Subjt:  LYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETKIIIEKLDSKF

XP_038887118.1 uncharacterized protein K02A2.6-like [Benincasa hispida]1.0e-0842.16Show/hide
Query:  EEKKMTTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETKIIIEKLDSKFPSKVNNGNQHMDINANAFLE
        +E   T MARF  GL KEIA  +DLQ Y D+++M++LAIK+EKHL  K  RYT  KP S+++SS + E +       S F S+     ++     NAF+ 
Subjt:  EEKKMTTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETKIIIEKLDSKFPSKVNNGNQHMDINANAFLE

Query:  RQ
        R+
Subjt:  RQ

TrEMBL top hitse value%identityAlignment
A0A2N9EHJ5 Reverse transcriptase domain-containing protein3.4e-1035.82Show/hide
Query:  QRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM-----------------------------TTMARFFRGLKKEIA
        + R  RD   +D NL S+K K+P F G TN + ++EWE+++D  F C    EEKK+                              TMARF  GL ++IA
Subjt:  QRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM-----------------------------TTMARFFRGLKKEIA

Query:  ALLDLQLYGDLDKMVNLAIKIEKHLQRKST-RYT
         +++LQ Y +++ MV++A+K+E+ L+RK T RYT
Subjt:  ALLDLQLYGDLDKMVNLAIKIEKHLQRKST-RYT

A0A2N9ERD4 Ribonuclease H9.9e-1029.76Show/hide
Query:  IQKERSNPLHHKEYWEVKGKEYGGRFKAVQRRNSRDIHK-----VDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM----------
        ++ E  N    ++  ++  +   GR +  +R    + ++     +D NL S+K K+P F G TN + ++EWE+++D  F C    EEKK+          
Subjt:  IQKERSNPLHHKEYWEVKGKEYGGRFKAVQRRNSRDIHK-----VDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM----------

Query:  -------------------TTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKST-RYT
                            TMARF  GL ++IA +++LQ Y +++ MV++A+K+E+ L+RK T RYT
Subjt:  -------------------TTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKST-RYT

A0A438EAM1 Uncharacterized protein1.5e-1029.63Show/hide
Query:  LHHKEYWEVKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKK---------------MTTMARFFR
        L+H+  + ++G+  G  F+   R       + D NL ++K K+P F G  + + ++EWE+ V+  F C    EEKK                 TM RF  
Subjt:  LHHKEYWEVKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKK---------------MTTMARFFR

Query:  GLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTR-YTKPKPISNIHSSLEKETKIIIE
        GL ++IA +++LQ Y +L+ MV++AIK+E+ L++K TR +  P   ++   ++ K+ +++ +
Subjt:  GLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTR-YTKPKPISNIHSSLEKETKIIIE

A0A5A7T993 Retrotrans_gag domain-containing protein7.3e-1329.19Show/hide
Query:  VKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM-------------------------------
        V+ K  G  ++ +QRR  ++  + + N+ ++K K+ KF+G T+ +E+I+WE++V++ F C     E+K+                               
Subjt:  VKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYGSTNSKEHIEWERQVDHFFVCCTLCEEKKM-------------------------------

Query:  --------------------TTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETK
                            T MA+F  GL KEI   +DLQ Y D+++M++LAIK+EK    + TRY   KP S+ +SS +KE K
Subjt:  --------------------TTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETK

A0A6J1DYV9 uncharacterized protein LOC1110255395.6e-1327.95Show/hide
Query:  HRSMEQMTMQFEKLVARIK-------SMEKQPTYLIQKERSNPLHHKE---------YWEVKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYG
        +R +E M  Q E+L+AR+        +  +QP  ++++E       ++           E +G    G F+  +++  R+ + VD    ++K K PKF+G
Subjt:  HRSMEQMTMQFEKLVARIK-------SMEKQPTYLIQKERSNPLHHKE---------YWEVKGKEYGGRFKAVQRRNSRDIHKVDPNL-SMKPKLPKFYG

Query:  STNSKEHIEWERQVDHFFVCCTLCEEKK--------------------------------------------------MTTMARFFRGLKKEIAALLDLQ
        ++NS++++EWE++ +H F    L EEKK                                                    TMARF  GL  E+A  +DLQ
Subjt:  STNSKEHIEWERQVDHFFVCCTLCEEKK--------------------------------------------------MTTMARFFRGLKKEIAALLDLQ

Query:  LYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETKIIIEKLDSKF
        +Y D++++V+ ++KIEK +QR+ +RY   KP SN  SS +K+ K      DSKF
Subjt:  LYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETKIIIEKLDSKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAATATGATTTTGCAGGACTTCACCGAAGCATGGAGCAAATGACCATGCAATTTGAGAAATTGGTTGCAAGGATCAAATCCATGGAGAAACAACCAACCTATCT
TATCCAAAAGGAGAGATCTAATCCATTGCACCACAAGGAGTATTGGGAGGTAAAAGGAAAAGAATATGGTGGAAGATTCAAAGCTGTCCAACGGAGAAATTCAAGAGATA
TTCATAAAGTTGATCCCAACTTGAGCATGAAGCCTAAACTTCCTAAATTCTATGGAAGTACAAACTCGAAGGAGCACATTGAATGGGAAAGGCAAGTTGATCATTTTTTT
GTTTGTTGCACTTTATGTGAGGAGAAAAAGATGACTACCATGGCTCGTTTCTTTAGAGGACTTAAGAAGGAGATTGCCGCCCTACTTGATCTTCAACTTTATGGGGATTT
AGACAAGATGGTGAACTTAGCCATAAAGATTGAAAAACATCTCCAAAGGAAGTCTACAAGGTACACTAAACCTAAACCAATTTCCAATATTCATTCATCTTTGGAAAAGG
AAACTAAAATAATCATTGAGAAGCTTGATTCAAAGTTCCCTTCTAAAGTCAACAATGGCAACCAGCACATGGACATCAATGCCAATGCATTTCTTGAGAGGCAAAACTCC
AAAGTTGCTTCTAAGTTCATCCATGGCAGCACACATAAGGTGTTCAAACCGGGTGATTGGGTTTGGAAATACTATTGGAATGATCCTTGTTCTTTTCATAAGAAACCCAA
GTGGAGATCCAAAGATTATGCTGCTGAGCGACTGGAAGGAGCAAATTCTATGCTGCAGCAAAACTGGGAACAGAAACTGCCACATCACAGCTCGTTAGCCAACTTCATGA
ACCGACTTCTGTTGAGTTATTTTTGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCAATATGATTTTGCAGGACTTCACCGAAGCATGGAGCAAATGACCATGCAATTTGAGAAATTGGTTGCAAGGATCAAATCCATGGAGAAACAACCAACCTATCT
TATCCAAAAGGAGAGATCTAATCCATTGCACCACAAGGAGTATTGGGAGGTAAAAGGAAAAGAATATGGTGGAAGATTCAAAGCTGTCCAACGGAGAAATTCAAGAGATA
TTCATAAAGTTGATCCCAACTTGAGCATGAAGCCTAAACTTCCTAAATTCTATGGAAGTACAAACTCGAAGGAGCACATTGAATGGGAAAGGCAAGTTGATCATTTTTTT
GTTTGTTGCACTTTATGTGAGGAGAAAAAGATGACTACCATGGCTCGTTTCTTTAGAGGACTTAAGAAGGAGATTGCCGCCCTACTTGATCTTCAACTTTATGGGGATTT
AGACAAGATGGTGAACTTAGCCATAAAGATTGAAAAACATCTCCAAAGGAAGTCTACAAGGTACACTAAACCTAAACCAATTTCCAATATTCATTCATCTTTGGAAAAGG
AAACTAAAATAATCATTGAGAAGCTTGATTCAAAGTTCCCTTCTAAAGTCAACAATGGCAACCAGCACATGGACATCAATGCCAATGCATTTCTTGAGAGGCAAAACTCC
AAAGTTGCTTCTAAGTTCATCCATGGCAGCACACATAAGGTGTTCAAACCGGGTGATTGGGTTTGGAAATACTATTGGAATGATCCTTGTTCTTTTCATAAGAAACCCAA
GTGGAGATCCAAAGATTATGCTGCTGAGCGACTGGAAGGAGCAAATTCTATGCTGCAGCAAAACTGGGAACAGAAACTGCCACATCACAGCTCGTTAGCCAACTTCATGA
ACCGACTTCTGTTGAGTTATTTTTGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG
Protein sequenceShow/hide protein sequence
MSQYDFAGLHRSMEQMTMQFEKLVARIKSMEKQPTYLIQKERSNPLHHKEYWEVKGKEYGGRFKAVQRRNSRDIHKVDPNLSMKPKLPKFYGSTNSKEHIEWERQVDHFF
VCCTLCEEKKMTTMARFFRGLKKEIAALLDLQLYGDLDKMVNLAIKIEKHLQRKSTRYTKPKPISNIHSSLEKETKIIIEKLDSKFPSKVNNGNQHMDINANAFLERQNS
KVASKFIHGSTHKVFKPGDWVWKYYWNDPCSFHKKPKWRSKDYAAERLEGANSMLQQNWEQKLPHHSSLANFMNRLLLSYFCDKGSRRALHVS