; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041843 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041843
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr13:29075974..29081398
RNA-Seq ExpressionLag0041843
SyntenyLag0041843
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-6957.65Show/hide
Query:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS
        TSE  M E+EKK+NML+K+VEE+DY+IA LK  ++S+DA ESSH   +K  DKGK +  + Q Q+S S ASLSVQQLQ++I N I+ QYG   Q   LYS
Subjt:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS

Query:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK
        KSYTKRIDN+RM                                   GDLLVKQF+RTLKGNA++WY DLEP++I++W+Q E++FLNRFYSTRRIVSM +
Subjt:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK

Query:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        LTN +Q+  ELV+DYINRWRA S DCKD LT LSAV MCTQGMHWELL+IFQG++
Subjt:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

KAA0046210.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-6958.43Show/hide
Query:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS
        TSE  MAE+EKK+NML+K+VEE+DY+IA LK  ++S+DA ESSH   +K  DKGK +  + Q Q+S S ASLSVQQLQ++I + I+ QYG   Q   LYS
Subjt:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS

Query:  KSYTKRIDNVRMS----------------------------------GDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK
        K YTKRIDN+RMS                                  GDLLVKQFVRTLKGNA+DWY DLEP++I++WEQ E++FLNRFYSTRRIVSM +
Subjt:  KSYTKRIDNVRMS----------------------------------GDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK

Query:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        LTN +Q+K ELV+DYINRWRA S DCKD LT LSAV MCTQGMHW LL+I QG++
Subjt:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.3e-6959.61Show/hide
Query:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS
        TSE+ MAE+EKK+NML+K VEE+D++IA LK  ++S+DA ESSHT  IK  +KGK I  + Q Q+S S ASLSVQQLQ++I N I+ QYG   Q   LYS
Subjt:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS

Query:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK
        K YTKRIDN+RM                                   GDLLVKQFVRTLKGNA+DWYTDLEP++I+SWEQ E++FLNRFYSTRRIVSM +
Subjt:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK

Query:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        LT  KQRK E V+DYINRWRA S DCKD LT LSAV MCTQGMHW LL+I QG++
Subjt:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

KAA0059562.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-6858.04Show/hide
Query:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS
        TSE  MAE+EKK+NML+K+VEE+DY+IA LK  ++S+DA ESSH   +K  DKGK +  + Q Q+S S ASLSVQQLQ++I + I+ QYG   Q   LYS
Subjt:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS

Query:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK
        K YTKRIDN+RM                                   GDLLVKQFVRTLKGNA+DWY DLEP++I++WEQ E++FLNRFYSTRRIVSM +
Subjt:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK

Query:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        LTN +Q+K ELV+DYINRWRA S DCKD LT LSAV MCTQGMHW LL+I QG++
Subjt:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

TYK18586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-6857.87Show/hide
Query:  SEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYSK
        SE+ MAE+EKK+NML+K+VEE+DY+IA LK  ++S+DA ESSH   +K  DKGK +  + Q Q+S S ASLSVQQLQ++I + I+ QYG   Q   LYSK
Subjt:  SEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYSK

Query:  SYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFKL
         YTKRIDN+RM                                   GDLLVKQFVRTLKGNA+DWY DLEP++I++WEQ E++FLNRFYSTRRIVSM +L
Subjt:  SYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFKL

Query:  TNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        TN +Q+K ELV+DYINRWRA S DCKD LT LSAV MCTQGMHW LL+I QG++
Subjt:  TNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

TrEMBL top hitse value%identityAlignment
A0A5A7TST6 Ty3-gypsy retrotransposon protein2.1e-6958.43Show/hide
Query:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS
        TSE  MAE+EKK+NML+K+VEE+DY+IA LK  ++S+DA ESSH   +K  DKGK +  + Q Q+S S ASLSVQQLQ++I + I+ QYG   Q   LYS
Subjt:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS

Query:  KSYTKRIDNVRMS----------------------------------GDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK
        K YTKRIDN+RMS                                  GDLLVKQFVRTLKGNA+DWY DLEP++I++WEQ E++FLNRFYSTRRIVSM +
Subjt:  KSYTKRIDNVRMS----------------------------------GDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK

Query:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        LTN +Q+K ELV+DYINRWRA S DCKD LT LSAV MCTQGMHW LL+I QG++
Subjt:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

A0A5A7TZU9 Ribonuclease H1.6e-6959.61Show/hide
Query:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS
        TSE+ MAE+EKK+NML+K VEE+D++IA LK  ++S+DA ESSHT  IK  +KGK I  + Q Q+S S ASLSVQQLQ++I N I+ QYG   Q   LYS
Subjt:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS

Query:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK
        K YTKRIDN+RM                                   GDLLVKQFVRTLKGNA+DWYTDLEP++I+SWEQ E++FLNRFYSTRRIVSM +
Subjt:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK

Query:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        LT  KQRK E V+DYINRWRA S DCKD LT LSAV MCTQGMHW LL+I QG++
Subjt:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

A0A5A7UUI7 Ty3-gypsy retrotransposon protein7.8e-6958.04Show/hide
Query:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS
        TSE  MAE+EKK+NML+K+VEE+DY+IA LK  ++S+DA ESSH   +K  DKGK +  + Q Q+S S ASLSVQQLQ++I + I+ QYG   Q   LYS
Subjt:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS

Query:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK
        K YTKRIDN+RM                                   GDLLVKQFVRTLKGNA+DWY DLEP++I++WEQ E++FLNRFYSTRRIVSM +
Subjt:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK

Query:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        LTN +Q+K ELV+DYINRWRA S DCKD LT LSAV MCTQGMHW LL+I QG++
Subjt:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

A0A5D3C4W1 Ty3-gypsy retrotransposon protein9.2e-7057.65Show/hide
Query:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS
        TSE  M E+EKK+NML+K+VEE+DY+IA LK  ++S+DA ESSH   +K  DKGK +  + Q Q+S S ASLSVQQLQ++I N I+ QYG   Q   LYS
Subjt:  TSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYS

Query:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK
        KSYTKRIDN+RM                                   GDLLVKQF+RTLKGNA++WY DLEP++I++W+Q E++FLNRFYSTRRIVSM +
Subjt:  KSYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFK

Query:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        LTN +Q+  ELV+DYINRWRA S DCKD LT LSAV MCTQGMHWELL+IFQG++
Subjt:  LTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

A0A5D3D4X3 Ty3-gypsy retrotransposon protein1.7e-6857.87Show/hide
Query:  SEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYSK
        SE+ MAE+EKK+NML+K+VEE+DY+IA LK  ++S+DA ESSH   +K  DKGK +  + Q Q+S S ASLSVQQLQ++I + I+ QYG   Q   LYSK
Subjt:  SEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTLAIK--DKGK-INTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYSK

Query:  SYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFKL
         YTKRIDN+RM                                   GDLLVKQFVRTLKGNA+DWY DLEP++I++WEQ E++FLNRFYSTRRIVSM +L
Subjt:  SYTKRIDNVRM----------------------------------SGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTRRIVSMFKL

Query:  TNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE
        TN +Q+K ELV+DYINRWRA S DCKD LT LSAV MCTQGMHW LL+I QG++
Subjt:  TNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGTGGGGTGGCGACACTACAATTCTCTGTAGCCAACGATGTGGCCGACATGGAGGCTAAATTCAAGATGGTGGCTGATGCCTTTCTCTGCTTTAAAGCATGCAC
CGAACAATGTAAAGCCAAAGGAATTAAGTCCTCTGAGGATTGTATGGCAACATGCAAACATTGTGACAAGGAACTGTTTCGAACTAGTGAAGAAAGTATGGCTGAAGTTG
AGAAGAAGATCAACATGTTATTGAAGATGGTCGAAGAGAAAGACTACAAAATTGCCTGTCTCAAAGGCCAAATGAAAAGTCAGGATGCCGTTGAATCAAGTCATACCCTT
GCCATCAAAGATAAGGGAAAGATTAATACACAAGATCAATCACAACATTCCGCTTCTACTGCTTCACTATCCGTCCAACAACTCCAAGATTTGATCATGAACTTCATCAG
AGCTCAATATGGTGAACTGACTCAGAACTCTCTCTTGTATTCCAAGTCGTATACCAAGAGAATCGACAATGTAAGAATGTCAGGAGACCTATTGGTCAAGCAGTTTGTAC
GAACACTAAAGGGAAATGCTTACGACTGGTATACCGACCTTGAGCCTAAGACTATTAATAGTTGGGAACAACATGAGAAGGAGTTCCTCAATCGCTTCTACAGCACCAGA
CGAATCGTTAGTATGTTTAAGCTCACTAACATTAAACAACGAAAAGATGAACTTGTTGTTGACTACATAAATCGTTGGAGAGCAACGAGTCGTGATTGCAAGGATCACCT
CACTGGACTCTCTGCTGTTGGGATGTGCACTCAAGGCATGCACTGGGAACTTCTCCACATCTTTCAAGGGCTAGAGCGTCTCGATGTTTGGCAGGCAGCGAAGAAAGATC
TGGAATCACGACAACGTCGCGACGCTGTCCATGTAGCGTCGCAACGTTGCGCCAACTTCTGCAGCAAGAAAGGTGTGAAGTCACAGCGTTGCGACGCTGTCGACTTGTTC
AGCAAGAAAGGGTCCTCCCCTCCCCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTGTGGGGTGGCGACACTACAATTCTCTGTAGCCAACGATGTGGCCGACATGGAGGCTAAATTCAAGATGGTGGCTGATGCCTTTCTCTGCTTTAAAGCATGCAC
CGAACAATGTAAAGCCAAAGGAATTAAGTCCTCTGAGGATTGTATGGCAACATGCAAACATTGTGACAAGGAACTGTTTCGAACTAGTGAAGAAAGTATGGCTGAAGTTG
AGAAGAAGATCAACATGTTATTGAAGATGGTCGAAGAGAAAGACTACAAAATTGCCTGTCTCAAAGGCCAAATGAAAAGTCAGGATGCCGTTGAATCAAGTCATACCCTT
GCCATCAAAGATAAGGGAAAGATTAATACACAAGATCAATCACAACATTCCGCTTCTACTGCTTCACTATCCGTCCAACAACTCCAAGATTTGATCATGAACTTCATCAG
AGCTCAATATGGTGAACTGACTCAGAACTCTCTCTTGTATTCCAAGTCGTATACCAAGAGAATCGACAATGTAAGAATGTCAGGAGACCTATTGGTCAAGCAGTTTGTAC
GAACACTAAAGGGAAATGCTTACGACTGGTATACCGACCTTGAGCCTAAGACTATTAATAGTTGGGAACAACATGAGAAGGAGTTCCTCAATCGCTTCTACAGCACCAGA
CGAATCGTTAGTATGTTTAAGCTCACTAACATTAAACAACGAAAAGATGAACTTGTTGTTGACTACATAAATCGTTGGAGAGCAACGAGTCGTGATTGCAAGGATCACCT
CACTGGACTCTCTGCTGTTGGGATGTGCACTCAAGGCATGCACTGGGAACTTCTCCACATCTTTCAAGGGCTAGAGCGTCTCGATGTTTGGCAGGCAGCGAAGAAAGATC
TGGAATCACGACAACGTCGCGACGCTGTCCATGTAGCGTCGCAACGTTGCGCCAACTTCTGCAGCAAGAAAGGTGTGAAGTCACAGCGTTGCGACGCTGTCGACTTGTTC
AGCAAGAAAGGGTCCTCCCCTCCCCTATAA
Protein sequenceShow/hide protein sequence
MHCGVATLQFSVANDVADMEAKFKMVADAFLCFKACTEQCKAKGIKSSEDCMATCKHCDKELFRTSEESMAEVEKKINMLLKMVEEKDYKIACLKGQMKSQDAVESSHTL
AIKDKGKINTQDQSQHSASTASLSVQQLQDLIMNFIRAQYGELTQNSLLYSKSYTKRIDNVRMSGDLLVKQFVRTLKGNAYDWYTDLEPKTINSWEQHEKEFLNRFYSTR
RIVSMFKLTNIKQRKDELVVDYINRWRATSRDCKDHLTGLSAVGMCTQGMHWELLHIFQGLERLDVWQAAKKDLESRQRRDAVHVASQRCANFCSKKGVKSQRCDAVDLF
SKKGSSPPL