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Lag0041849 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041849
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr13:29373291..29374779
RNA-Seq ExpressionLag0041849
SyntenyLag0041849
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146774.1 uncharacterized protein LOC111015901 [Momordica charantia]1.1e-2445.58Show/hide
Query:  LEFTEVEAASIHQPHNDVLV-----SNA-------------------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL
        +EF+E EA  +  PHND LV     +NA                            E+LK SLTPL+GFGGER+ P+G IELP+TF     ++T+M++FL
Subjt:  LEFTEVEAASIHQPHNDVLV-----SNA-------------------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL

Query:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR
        VVD  S+YN IL RPT+H ++AI ST+HQ +KFPTP GVG  K  +R
Subjt:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR

XP_022150858.1 uncharacterized protein LOC111018902 [Momordica charantia]9.2e-2446.26Show/hide
Query:  LEFTEVEAASIHQPHNDVLVSNATKREL------------------------------LKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL
        +EF E E   I  PHND LV N                                    LK S  PLVGFGGE V PEG IELPVTFG G  ++TKM++FL
Subjt:  LEFTEVEAASIHQPHNDVLVSNATKREL------------------------------LKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL

Query:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR
        VVD  S+ N ILGRPT+H +KAI S +HQ +KFPTP G+G  K  +R
Subjt:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR

XP_022155186.1 uncharacterized protein LOC111022321 [Momordica charantia]7.0e-2448.3Show/hide
Query:  LEFTEVEAASIHQPHNDVLV------------------SNA------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL
        +EF+E EA  +  PHND LV                  S+A               ++LK S  PLVGFGGERV  EG IELPVTFG G  +VTKM++FL
Subjt:  LEFTEVEAASIHQPHNDVLV------------------SNA------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL

Query:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR
        VV+  S+YN ILGRPT+H +KAI ST+HQ  KFPT  GVG  K  +R
Subjt:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]2.0e-2346.41Show/hide
Query:  QPAHPPLEFTEVEAASIHQPHNDVLV-----SNATKREL-------------------------LKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVT
        QPA   LEF+E EA  +  PHND LV     +NA    +                         LK S  PLVGFGGERV PEG IELPV FG G  ++ 
Subjt:  QPAHPPLEFTEVEAASIHQPHNDVLV-----SNATKREL-------------------------LKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVT

Query:  KMINFLVVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR
        KM++FLVV   S+YNVILGRP +H +K I ST+HQ +KFPT +G+G  K  +R
Subjt:  KMINFLVVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR

XP_022158432.1 uncharacterized protein LOC111024924 [Momordica charantia]1.2e-2347.48Show/hide
Query:  LEFTEVEAASIHQPHNDVLV-----SNA-------------------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL
        +EF+E EA  +   HND LV     +NA                            ++LK S  PL+GFGGERV PEG IELPVTFG G  ++TKM++FL
Subjt:  LEFTEVEAASIHQPHNDVLV-----SNA-------------------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL

Query:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGV
        VV+  S+YN ILGRPT+H ++AI ST+HQ +KFPTP GV
Subjt:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGV

TrEMBL top hitse value%identityAlignment
A0A6J1CZ14 uncharacterized protein LOC1110159015.2e-2545.58Show/hide
Query:  LEFTEVEAASIHQPHNDVLV-----SNA-------------------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL
        +EF+E EA  +  PHND LV     +NA                            E+LK SLTPL+GFGGER+ P+G IELP+TF     ++T+M++FL
Subjt:  LEFTEVEAASIHQPHNDVLV-----SNA-------------------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL

Query:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR
        VVD  S+YN IL RPT+H ++AI ST+HQ +KFPTP GVG  K  +R
Subjt:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR

A0A6J1DAK4 uncharacterized protein LOC1110189024.4e-2446.26Show/hide
Query:  LEFTEVEAASIHQPHNDVLVSNATKREL------------------------------LKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL
        +EF E E   I  PHND LV N                                    LK S  PLVGFGGE V PEG IELPVTFG G  ++TKM++FL
Subjt:  LEFTEVEAASIHQPHNDVLVSNATKREL------------------------------LKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL

Query:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR
        VVD  S+ N ILGRPT+H +KAI S +HQ +KFPTP G+G  K  +R
Subjt:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR

A0A6J1DP33 uncharacterized protein LOC1110228869.9e-2446.41Show/hide
Query:  QPAHPPLEFTEVEAASIHQPHNDVLV-----SNATKREL-------------------------LKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVT
        QPA   LEF+E EA  +  PHND LV     +NA    +                         LK S  PLVGFGGERV PEG IELPV FG G  ++ 
Subjt:  QPAHPPLEFTEVEAASIHQPHNDVLV-----SNATKREL-------------------------LKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVT

Query:  KMINFLVVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR
        KM++FLVV   S+YNVILGRP +H +K I ST+HQ +KFPT +G+G  K  +R
Subjt:  KMINFLVVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR

A0A6J1DQY2 uncharacterized protein LOC1110223213.4e-2448.3Show/hide
Query:  LEFTEVEAASIHQPHNDVLV------------------SNA------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL
        +EF+E EA  +  PHND LV                  S+A               ++LK S  PLVGFGGERV  EG IELPVTFG G  +VTKM++FL
Subjt:  LEFTEVEAASIHQPHNDVLV------------------SNA------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL

Query:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR
        VV+  S+YN ILGRPT+H +KAI ST+HQ  KFPT  GVG  K  +R
Subjt:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRR

A0A6J1DX76 uncharacterized protein LOC1110249245.8e-2447.48Show/hide
Query:  LEFTEVEAASIHQPHNDVLV-----SNA-------------------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL
        +EF+E EA  +   HND LV     +NA                            ++LK S  PL+GFGGERV PEG IELPVTFG G  ++TKM++FL
Subjt:  LEFTEVEAASIHQPHNDVLV-----SNA-------------------------TKRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFL

Query:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGV
        VV+  S+YN ILGRPT+H ++AI ST+HQ +KFPTP GV
Subjt:  VVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCAGAACCATCTTTGGAGGACCAACTGGAGGAGGTTCGAGTAGGAAGAGGAAAACTATTGCTAGGGAAGCGAGGTCC
AAACCAGAATATCGAGATATGTACTCTGTCCATCCAGCCTGCACACCCCCCTTTGGAGTTCACTGAGGTCGAGGCAGCGAGCATTCATCAGCCACATAATGATGTCCTAG
TGAGCAATGCAACTAAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTT
GGGGATGGACAGAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGCATGTCAGCCTACAATGTAATCCTAGGAAGGCCAACCTTGCATGAAATGAAGGCCAT
AGCTTCAACTCACCATCAGTTGCTGAAGTTTCCAACTCCAAATGGTGTGGGGTTGTCAAAGGCGAGCAGAAGGAATCATGAGAATGCGAGCCTGGACTACCGAGTCTACC
TCGCCTCATCCAGATTGAGATTATGTGAGCCTGGATCACCGAGTCTACCTCACCTCATCTGGCCGAAGCATCTTTGCATTGGACGAGCCTGGGCTACCGAGTCTGCCTCG
CCTCATCCAGACTTGAGATTGCTTGAGCCTAGACCACTGAGTCTACCTCACCTCGTCTGGCTCACCTGGCTGAGGCAGAAACCGAGCACCTCTTGCCGAGGCCGAGCATG
A
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCAGAACCATCTTTGGAGGACCAACTGGAGGAGGTTCGAGTAGGAAGAGGAAAACTATTGCTAGGGAAGCGAGGTCC
AAACCAGAATATCGAGATATGTACTCTGTCCATCCAGCCTGCACACCCCCCTTTGGAGTTCACTGAGGTCGAGGCAGCGAGCATTCATCAGCCACATAATGATGTCCTAG
TGAGCAATGCAACTAAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTT
GGGGATGGACAGAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGCATGTCAGCCTACAATGTAATCCTAGGAAGGCCAACCTTGCATGAAATGAAGGCCAT
AGCTTCAACTCACCATCAGTTGCTGAAGTTTCCAACTCCAAATGGTGTGGGGTTGTCAAAGGCGAGCAGAAGGAATCATGAGAATGCGAGCCTGGACTACCGAGTCTACC
TCGCCTCATCCAGATTGAGATTATGTGAGCCTGGATCACCGAGTCTACCTCACCTCATCTGGCCGAAGCATCTTTGCATTGGACGAGCCTGGGCTACCGAGTCTGCCTCG
CCTCATCCAGACTTGAGATTGCTTGAGCCTAGACCACTGAGTCTACCTCACCTCGTCTGGCTCACCTGGCTGAGGCAGAAACCGAGCACCTCTTGCCGAGGCCGAGCATG
A
Protein sequenceShow/hide protein sequence
MAETKKNPYERSEPSLEDQLEEVRVGRGKLLLGKRGPNQNIEICTLSIQPAHPPLEFTEVEAASIHQPHNDVLVSNATKRELLKPSLTPLVGFGGERVTPEGSIELPVTF
GDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTHHQLLKFPTPNGVGLSKASRRNHENASLDYRVYLASSRLRLCEPGSPSLPHLIWPKHLCIGRAWATESAS
PHPDLRLLEPRPLSLPHLVWLTWLRQKPSTSCRGRA