CuGenDBv2

Gene ID	Lag0041866
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase
Genome location	chr13:29636788..29637337
RNA-Seq Expression	Lag0041866
Synteny	Lag0041866
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0003824 - catalytic activity (molecular function) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.9e-58

72.09

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVI+ASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

KAA0042134.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.4e-58

72.67

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.9e-58

72.09

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVI+ASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

TYK06334.1 putative polyprotein [Cucumis melo var. makuwa]

1.9e-58

72.09

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVI+ASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

TYK27507.1 reverse transcriptase [Cucumis melo var. makuwa]

1.9e-58

72.09

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVI+ASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

9.1e-59

72.09

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVI+ASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

A0A5A7TFC5 Reverse transcriptase

7.0e-59

72.67

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

A0A5A7U2V7 Reverse transcriptase

9.1e-59

72.09

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVI+ASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

A0A5D3BHI1 Reverse transcriptase

9.1e-59

72.09

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVI+ASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

A0A5D3BS67 Reverse transcriptase

9.1e-59

72.09

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Query:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------
        YGIERLKKLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKV+LATFLLQKEAEGWWKSILARRSDA                              
Subjt:  YGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDA------------------------------

Query:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI
                + EYERKYTELSRYADVI+ASESDRCRRFERGLRFEIRTPVTAIAKWT+ SQLVETAL V+QSI
Subjt:  --------LVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTDSSQLVETALSVDQSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCACGGATCCAGCTGACGCCGAGATCTGGTTGAATATGTTGGAGAAATGCTTCGACGT
GATGAGTTGTCCTGAGGAGCGAAAAGTCAAATTAGCCACATTCCTTTTGCAGAAGGAGGCGGAGGGATGGTGGAAATCTATTTTAGCCAGGCGCAGTGATGCACTGGTCG
AGTACGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCGCAGGTTTGAGAGAGGGTTGCGTTTTGAGATACGTACC
CCAGTTACCGCTATTGCCAAGTGGACAGATTCTTCCCAGCTAGTAGAGACTGCCTTAAGTGTGGACCAGAGTATTAATTGTAAAGGAAAAGTCAGCTGTGGAGCCTAG

mRNA sequence

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Protein sequence

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MYGIERLKKLGATVFEGSTDPADAEIWLNMLEKCFDVMSCPEERKVKLATFLLQKEAEGWWKSILARRSDALVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRT
PVTAIAKWTDSSQLVETALSVDQSINCKGKVSCGA

Lag0041866 (gene) of Sponge gourd (AG-4) v1 genome