; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041868 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041868
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRegulator of chromosome condensation (RCC1) family protein
Genome locationchr13:29668394..29674195
RNA-Seq ExpressionLag0041868
SyntenyLag0041868
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000408 - Regulator of chromosome condensation, RCC1
IPR009091 - Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016066.1 Ultraviolet-B receptor UVR8 [Cucurbita argyrosperma subsp. argyrosperma]3.8e-4284.47Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G  KQI VP+RVQGLDMVRLIAVGAFHNL LQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL+DIAAGGWHST LTD+ E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYG
        G+G
Subjt:  GYG

KAG8659720.1 hypothetical protein MANES_02G067100v8 [Manihot esculenta]4.4e-4367.86Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE------------
        G  KQI VP+RVQGL+ V+LIAVGAFHNL LQ DGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLS LTL+DIAAGGWHST LTD+ E            
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE------------

Query:  -------FGRGDHGQLGYGRKVTTGQRLLDAINTKDRMNL
               FGRGDHG+LGYGRKVTTGQ +   I+     NL
Subjt:  -------FGRGDHGQLGYGRKVTTGQRLLDAINTKDRMNL

XP_022939399.1 ultraviolet-B receptor UVR8-like [Cucurbita moschata]3.8e-4284.47Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G  KQI VP+RVQGLDMVRLIAVGAFHNL LQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL+DIAAGGWHST LTD+ E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYG
        G+G
Subjt:  GYG

XP_022993194.1 ultraviolet-B receptor UVR8-like [Cucurbita maxima]3.8e-4284.47Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G  KQI VP+RVQGLDMVRLIAVGAFHNL LQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL+DIAAGGWHST LTD+ E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYG
        G+G
Subjt:  GYG

XP_023551359.1 ultraviolet-B receptor UVR8-like [Cucurbita pepo subsp. pepo]3.8e-4284.47Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G  KQI VP+RVQGLDMVRLIAVGAFHNL LQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL+DIAAGGWHST LTD+ E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYG
        G+G
Subjt:  GYG

TrEMBL top hitse value%identityAlignment
A0A0A0KXQ1 Uncharacterized protein2.4e-4284.47Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G   QI VP+RVQGLDMVRLIAVGAFHNL LQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL+DIAAGGWHST LTDN E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYG
        G+G
Subjt:  GYG

A0A1D6KPD0 Regulator of chromosome condensation (RCC1) family protein4.1e-4269.29Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNREFGRGDHGQLGYG
        G  KQI  P+RVQGL+ VR+IAVGAFHNL L EDG LWAWGNNEYGQLGTGDTQPRS PI V+GLS L+L+DIAAGGWHST LT   E+GRGDHG+LGYG
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNREFGRGDHGQLGYG

Query:  RKVTTGQRLLDAINTKDRMNLDLNLPP
        RK+TTGQ           M +D++LPP
Subjt:  RKVTTGQRLLDAINTKDRMNLDLNLPP

A0A5D3BMS2 Ultraviolet-B receptor UVR89.0e-4283.5Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G   QI VP+RVQGLDMVRLIAVGAFHNL LQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL+DIAAGGWHST LTD+ E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYG
        G+G
Subjt:  GYG

A0A6J1FH19 ultraviolet-B receptor UVR8-like1.8e-4284.47Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G  KQI VP+RVQGLDMVRLIAVGAFHNL LQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL+DIAAGGWHST LTD+ E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYG
        G+G
Subjt:  GYG

A0A6J1JZI8 ultraviolet-B receptor UVR8-like1.8e-4284.47Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G  KQI VP+RVQGLDMVRLIAVGAFHNL LQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL+DIAAGGWHST LTD+ E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYG
        G+G
Subjt:  GYG

SwissProt top hitse value%identityAlignment
Q6PAV2 Probable E3 ubiquitin-protein ligase HERC42.3e-1036.54Show/hide
Query:  GHKKQIFVPIRVQGLDMVRL--IAVGAFHNLVLQEDGTLWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDH
        G ++ I VP  ++ L  +++  +A G +H+L L +   ++ WG N+YGQLG G D Q ++ P  ++ L G+  + +AAGG HS  LT +     +GR   
Subjt:  GHKKQIFVPIRVQGLDMVRL--IAVGAFHNLVLQEDGTLWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDH

Query:  GQLG
        GQLG
Subjt:  GQLG

Q9FJG9 RCC1 domain-containing protein RUG3, mitochondrial3.2e-1240Show/hide
Query:  VPIRVQGLDM-VRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQLG
        VP +V+ L + V  ++ G F  + L ++G LW WG N   +LG GD     +P+PV  L G+ +  IA GG+HS  LT+  +   +G G HGQLG
Subjt:  VPIRVQGLDM-VRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQLG

Q9FN03 Ultraviolet-B receptor UVR81.4e-1033.33Show/hide
Query:  GHKKQIFVPIRVQGLDMVRL--IAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHG
        G+   +F P+ ++ L  +R+  IA G  H L +  +G + +WG N+ GQLG GDT+    P  +Q   G+ +  +AAG  H+  +T++ +   +G G +G
Subjt:  GHKKQIFVPIRVQGLDMVRL--IAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHG

Query:  QLGYG
         LG G
Subjt:  QLGYG

Q9P258 Protein RCC25.2e-1040Show/hide
Query:  VRLIAVG--AFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQLGYGRK
        VR +  G  A H+L++  +G LW+WG NE GQLG GDT+    P  ++GLS   ++  A G  H+  LT+      FG    GQLG G +
Subjt:  VRLIAVG--AFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQLGYGRK

Q9UII4 E3 ISG15--protein ligase HERC53.9e-1036.45Show/hide
Query:  LGHKKQIFVPIRVQGLD--MVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNR----EFGRGD
        LGH +    P  ++GLD   V  +A G  H+ +L +DG L+ +G  ++GQLG   TQ   +P  V  L G  +  IA G WH+     +      FG G 
Subjt:  LGHKKQIFVPIRVQGLD--MVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNR----EFGRGD

Query:  HGQLGYG
         GQLG G
Subjt:  HGQLGYG

Arabidopsis top hitse value%identityAlignment
AT3G02510.1 Regulator of chromosome condensation (RCC1) family protein2.4e-3949.46Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE------------
        G  KQI VP+RVQGL+ VRLIAVGAFHNL L+EDG L AWGNNEYGQLGTGDTQP S P+PVQGL  LTL+DIAAGGWHST LTD  E            
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE------------

Query:  ---------------------------------------------FGRGDHGQLGYGRKVTTGQRLLDAINTKDRMNLDLNLPPEE
                                                     FGRGDHG+LGYGRKVTTGQ L           L + +PP E
Subjt:  ---------------------------------------------FGRGDHGQLGYGRKVTTGQRLLDAINTKDRMNLDLNLPPEE

AT3G02510.2 Regulator of chromosome condensation (RCC1) family protein1.9e-3966.67Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G  KQI VP+RVQGL+ VRLIAVGAFHNL L+EDG L AWGNNEYGQLGTGDTQP S P+PVQGL  LTL+DIAAGGWHST LTD  E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYGRKVTTGQRLLDAIN
        G G    + + +   +N
Subjt:  GYGRKVTTGQRLLDAIN

AT5G16040.1 Regulator of chromosome condensation (RCC1) family protein1.8e-4270.09Show/hide
Query:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL
        G  KQI VP+RVQGL+ VRLIAVGAFHNL L+EDGTLWAWGNNEYGQLGTGDTQPRS PIPVQGL  LTL+DIAAGGWHST LT+  E   +GRG+HG+L
Subjt:  GHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQL

Query:  GYGRKVTTGQRLLDAIN
        G+G    + + L   +N
Subjt:  GYGRKVTTGQRLLDAIN

AT5G60870.1 Regulator of chromosome condensation (RCC1) family protein2.3e-1340Show/hide
Query:  VPIRVQGLDM-VRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQLG
        VP +V+ L + V  ++ G F  + L ++G LW WG N   +LG GD     +P+PV  L G+ +  IA GG+HS  LT+  +   +G G HGQLG
Subjt:  VPIRVQGLDM-VRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQLG

AT5G60870.2 Regulator of chromosome condensation (RCC1) family protein2.3e-1340Show/hide
Query:  VPIRVQGLDM-VRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQLG
        VP +V+ L + V  ++ G F  + L ++G LW WG N   +LG GD     +P+PV  L G+ +  IA GG+HS  LT+  +   +G G HGQLG
Subjt:  VPIRVQGLDM-VRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTDNRE---FGRGDHGQLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATTTGTTGATAGGCATCGAAGAGAGGTGGAATTCGATGTAGGTGATATGGTATTTTTGAAAATTCATCCATATCGACAGACCCCCCTCGCCCGCCGTAGAAA
TGAAAAGTTATCTCCTAAATTCTTTGGCCCTTATAAGTTGAAGAAGCAGTTGGGGACAACTAAAACAGTTCAAACCATCCAACCGCCTTTGTCTGAGGATTTTGAATGGC
AAGCGGAACTAGACGACATTTTGGCTTGCCGTAAGAATCAACTCAATGGGGAGACTGAATTACTGGTTAGTTGGAAACACATCCGAGAACACGAGGGTACTTGGATGGGT
TTGTCCGCTTTTCGCGAGCAGTTCCCCACTTATCACGTTGAGGACAAGGTGCAACTGACCCCGATGGTGATGTTAGGCCACAAAAAGCAAATTTTTGTTCCTATACGAGT
TCAAGGTCTTGACATGGTGAGACTCATTGCGGTTGGGGCATTCCATAATTTGGTTCTCCAAGAAGATGGAACTTTATGGGCATGGGGTAATAATGAATATGGACAACTTG
GAACTGGTGACACACAACCAAGATCACAGCCAATTCCAGTCCAGGGGCTTTCAGGCCTTACTTTGATTGACATTGCAGCTGGAGGATGGCATTCAACTACATTGACAGAT
AACAGAGAGTTTGGGCGAGGTGACCATGGACAGCTTGGATATGGAAGGAAGGTGACAACTGGGCAACGTTTACTAGATGCAATAAACACTAAAGATAGGATGAATTTGGA
CTTGAATTTGCCGCCCGAGGAGCCCGAGGATATAAATTTGGAATTGAGCCTAGCTCCTCCTGCACCTCCTGCTTCTGCTCCTTTTGTGCCTCAGCCTACTAGTCCCCATG
CTCCTGCTCCTTTTGTTCCTTCCTTTGCCTCCTCATCCCCATGCTTCTTTGCCTTTTGTGTCTCTGTCTCCTCGTCCCCGTCCCCACGCTTCTCTGCCTTCGTCCCTGGG
TGCTTTTGCCTTCTGTGCCTCTGCCTCCTCGTCCCCAAGCGTCTTTGCCTCCTTGGTGGGCTCCCAGGTGCCTACGTCTCTTTTGGCTTCCTGGACTCATTTTCCTATGC
CCTCTGCTCCTCCAGAAAATATATTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAATTTGTTGATAGGCATCGAAGAGAGGTGGAATTCGATGTAGGTGATATGGTATTTTTGAAAATTCATCCATATCGACAGACCCCCCTCGCCCGCCGTAGAAA
TGAAAAGTTATCTCCTAAATTCTTTGGCCCTTATAAGTTGAAGAAGCAGTTGGGGACAACTAAAACAGTTCAAACCATCCAACCGCCTTTGTCTGAGGATTTTGAATGGC
AAGCGGAACTAGACGACATTTTGGCTTGCCGTAAGAATCAACTCAATGGGGAGACTGAATTACTGGTTAGTTGGAAACACATCCGAGAACACGAGGGTACTTGGATGGGT
TTGTCCGCTTTTCGCGAGCAGTTCCCCACTTATCACGTTGAGGACAAGGTGCAACTGACCCCGATGGTGATGTTAGGCCACAAAAAGCAAATTTTTGTTCCTATACGAGT
TCAAGGTCTTGACATGGTGAGACTCATTGCGGTTGGGGCATTCCATAATTTGGTTCTCCAAGAAGATGGAACTTTATGGGCATGGGGTAATAATGAATATGGACAACTTG
GAACTGGTGACACACAACCAAGATCACAGCCAATTCCAGTCCAGGGGCTTTCAGGCCTTACTTTGATTGACATTGCAGCTGGAGGATGGCATTCAACTACATTGACAGAT
AACAGAGAGTTTGGGCGAGGTGACCATGGACAGCTTGGATATGGAAGGAAGGTGACAACTGGGCAACGTTTACTAGATGCAATAAACACTAAAGATAGGATGAATTTGGA
CTTGAATTTGCCGCCCGAGGAGCCCGAGGATATAAATTTGGAATTGAGCCTAGCTCCTCCTGCACCTCCTGCTTCTGCTCCTTTTGTGCCTCAGCCTACTAGTCCCCATG
CTCCTGCTCCTTTTGTTCCTTCCTTTGCCTCCTCATCCCCATGCTTCTTTGCCTTTTGTGTCTCTGTCTCCTCGTCCCCGTCCCCACGCTTCTCTGCCTTCGTCCCTGGG
TGCTTTTGCCTTCTGTGCCTCTGCCTCCTCGTCCCCAAGCGTCTTTGCCTCCTTGGTGGGCTCCCAGGTGCCTACGTCTCTTTTGGCTTCCTGGACTCATTTTCCTATGC
CCTCTGCTCCTCCAGAAAATATATTCTGTAA
Protein sequenceShow/hide protein sequence
MKKFVDRHRREVEFDVGDMVFLKIHPYRQTPLARRRNEKLSPKFFGPYKLKKQLGTTKTVQTIQPPLSEDFEWQAELDDILACRKNQLNGETELLVSWKHIREHEGTWMG
LSAFREQFPTYHVEDKVQLTPMVMLGHKKQIFVPIRVQGLDMVRLIAVGAFHNLVLQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLIDIAAGGWHSTTLTD
NREFGRGDHGQLGYGRKVTTGQRLLDAINTKDRMNLDLNLPPEEPEDINLELSLAPPAPPASAPFVPQPTSPHAPAPFVPSFASSSPCFFAFCVSVSSSPSPRFSAFVPG
CFCLLCLCLLVPKRLCLLGGLPGAYVSFGFLDSFSYALCSSRKYIL