; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041869 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041869
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRegulator of chromosome condensation (RCC1) family protein
Genome locationchr13:29684000..29689435
RNA-Seq ExpressionLag0041869
SyntenyLag0041869
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000408 - Regulator of chromosome condensation, RCC1
IPR009091 - Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016066.1 Ultraviolet-B receptor UVR8 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-3095.83Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
        P GD KQI VPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL

KJB43032.1 hypothetical protein B456_007G180500 [Gossypium raimondii]1.4e-3081.4Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYV
        P GD KQI VPVRVQGL+ VRLI VGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL C  L    L +Y+
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYV

MBA0617979.1 hypothetical protein [Gossypium davidsonii]4.8e-3181.61Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYVS
        P GD KQI VPVRVQGL+ VRLI VGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL C  L    L +Y+S
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYVS

MBA0653312.1 hypothetical protein [Gossypium klotzschianum]4.8e-3181.61Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYVS
        P GD KQI VPVRVQGL+ VRLI VGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL C  L    L +Y+S
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYVS

XP_023551359.1 ultraviolet-B receptor UVR8-like [Cucurbita pepo subsp. pepo]1.8e-3095.83Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
        P GD KQI VPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL

TrEMBL top hitse value%identityAlignment
A0A0D2PBB5 Uncharacterized protein6.8e-3181.4Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYV
        P GD KQI VPVRVQGL+ VRLI VGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL C  L    L +Y+
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYV

A0A6J1FH19 ultraviolet-B receptor UVR8-like8.9e-3195.83Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
        P GD KQI VPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL

A0A6J1JZI8 ultraviolet-B receptor UVR8-like8.9e-3195.83Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
        P GD KQI VPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL

A0A7J8RVZ8 Uncharacterized protein2.3e-3181.61Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYVS
        P GD KQI VPVRVQGL+ VRLI VGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL C  L    L +Y+S
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYVS

A0A7J8USG1 Uncharacterized protein2.3e-3181.61Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYVS
        P GD KQI VPVRVQGL+ VRLI VGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL C  L    L +Y+S
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYAYVS

SwissProt top hitse value%identityAlignment
F2Z461 E3 ISG15--protein ligase Herc62.3e-0743.42Show/hide
Query:  GDEKQI-FVPVRVQGLDMVRLIAV--GAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLS
        G+ K+I F+P +++ L  +++I V  G +H+LAL EDG +++WG N  GQLG G    RSQ IP  V+ L G+ L+
Subjt:  GDEKQI-FVPVRVQGLDMVRLIAV--GAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLS

O95714 E3 ubiquitin-protein ligase HERC26.6e-0740.58Show/hide
Query:  GDEKQIFVPVRVQGLDMVRL--IAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG
        G +  +  P  V+GL   ++  +AVGA H LA+ + G ++AWG+N++GQ G G T    +P  VQGL G
Subjt:  GDEKQIFVPVRVQGLDMVRL--IAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG

Q4U2R1 E3 ubiquitin-protein ligase HERC26.6e-0740.58Show/hide
Query:  GDEKQIFVPVRVQGLDMVRL--IAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG
        G +  +  P  V+GL   ++  +AVGA H LA+ + G ++AWG+N++GQ G G T    +P  VQGL G
Subjt:  GDEKQIFVPVRVQGLDMVRL--IAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG

Q6P798 RCC1 and BTB domain-containing protein 23.9e-0742.65Show/hide
Query:  LGPDGDEKQIFVPVRVQGLDMVRL--IAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPV
        LG  G++     P RV  L  +R+  +A G  H L L ++G ++AWG N YGQLGTG+   +S P PV
Subjt:  LGPDGDEKQIFVPVRVQGLDMVRL--IAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPV

Q99LJ7 RCC1 and BTB domain-containing protein 23.9e-0742.65Show/hide
Query:  LGPDGDEKQIFVPVRVQGLDMVRL--IAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPV
        LG  G++     P RV  L  +R+  +A G  H L L ++G ++AWG N YGQLGTG+   +S P PV
Subjt:  LGPDGDEKQIFVPVRVQGLDMVRL--IAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPV

Arabidopsis top hitse value%identityAlignment
AT3G02510.1 Regulator of chromosome condensation (RCC1) family protein5.3e-2881.94Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
        P GD KQI VPVRVQGL+ VRLIAVGAFHNLAL+EDG L AWGNNEYGQLGTGDTQP S P+PVQGL  LTL
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL

AT3G02510.2 Regulator of chromosome condensation (RCC1) family protein5.3e-2881.94Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
        P GD KQI VPVRVQGL+ VRLIAVGAFHNLAL+EDG L AWGNNEYGQLGTGDTQP S P+PVQGL  LTL
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL

AT3G53830.1 Regulator of chromosome condensation (RCC1) family protein6.8e-0740.85Show/hide
Query:  LGPDGDEKQIFVPVRVQGLDM----VRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQ
        LG   D  +I +P  + G ++     + ++ GA H+  L EDG L  WG N+YGQLG GDT  R+ P  VQ
Subjt:  LGPDGDEKQIFVPVRVQGLDM----VRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQ

AT5G16040.1 Regulator of chromosome condensation (RCC1) family protein8.8e-3187.5Show/hide
Query:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL
        P GD KQI VPVRVQGL+ VRLIAVGAFHNLAL+EDGTLWAWGNNEYGQLGTGDTQPRS PIPVQGL  LTL
Subjt:  PDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL

AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein8.0e-0838.36Show/hide
Query:  GDEKQIFVPVRVQGLDMVR--LIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLS
        GD +   VP ++Q  + +R  ++A GA H  A+ EDG L+ WG   YG LG GD   R  P  V    G  +S
Subjt:  GDEKQIFVPVRVQGLDMVR--LIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATTTGATGATAGGCATCGAAGAGAGGTTGAATTCGATGTAGGTGATATGGTATTTTTGAAAATTCGTCCATATCGACACACCCCCCTCGCCCGCCGTAGAAA
TGAAAAGTTATCTCCTAAATTCTTTGGCCCTTATAAGTTGAAGAAGCAGTTGGGGACAACTAAAACAGTTCAAACCATCCAACCGCCTTTGTCTGAGGATTTTGAATGGC
AAGCGGAACTAGACGACATTTTTGCTTGCCGTAAGAATCAACTCAATGGGGAGACTGAATTACTGGTTAGTTGGAAACACATCCGAGAACACGAGGCTACTTGGATGGTT
TTGTCCGCTTTTCGCGAGCAGTTCCCCACTTATCACGTTGAGGACAAGGTGCAACTGACCCCGATGGTGATGTTAGGCCCCGATGGTGACGAAAAGCAAATTTTTGTTCC
TGTACGAGTTCAAGGTCTTGACATGGTGAGACTCATTGCGGTTGGGGCATTCCATAATTTGGCTCTCCAAGAAGATGGAACTTTATGGGCATGGGGTAATAATGAATATG
GACAACTTGGAACTGGTGACACACAACCAAGATCACAGCCAATTCCAGTCCAGGGGCTTTCAGGCCTTACTTTGTCTTGTTATATTCTTCGTCACCCTTGTTTATATGCG
TATGTCAGTTTGGGCGAGGTGACCATGGACAGCTTGGATATGGAAGGAAGGTCAAAGCCGGAATCAACTATCCATCTCTTTTGGGAGTGTAAACTAACGAAAGTTCATGG
CAGTCAACAACCCAACACAACAGTCCTCCAGCAACACATCAGCAGAAATTTGAAGAAATTCATAGGAGAAGATGAATTGTACCTGGTTACAGATGCTCCCGCGTCAATTC
GACCACCTATGACGCCGAAGGCAAATCACGAACCTGTGAATGTGTGTTGGCGATCAATACCAGCTGGTTTTTGGAAATTCAATAGTGACGCGACTTGGAAGGAGAAGGAT
TATCAAGGGGGAATCAGCTGGATCATCCGGCGGTGGGATGGCTCCATTGTGGCGGCAGGTTGCAGACACATTACTCAGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAATTTGATGATAGGCATCGAAGAGAGGTTGAATTCGATGTAGGTGATATGGTATTTTTGAAAATTCGTCCATATCGACACACCCCCCTCGCCCGCCGTAGAAA
TGAAAAGTTATCTCCTAAATTCTTTGGCCCTTATAAGTTGAAGAAGCAGTTGGGGACAACTAAAACAGTTCAAACCATCCAACCGCCTTTGTCTGAGGATTTTGAATGGC
AAGCGGAACTAGACGACATTTTTGCTTGCCGTAAGAATCAACTCAATGGGGAGACTGAATTACTGGTTAGTTGGAAACACATCCGAGAACACGAGGCTACTTGGATGGTT
TTGTCCGCTTTTCGCGAGCAGTTCCCCACTTATCACGTTGAGGACAAGGTGCAACTGACCCCGATGGTGATGTTAGGCCCCGATGGTGACGAAAAGCAAATTTTTGTTCC
TGTACGAGTTCAAGGTCTTGACATGGTGAGACTCATTGCGGTTGGGGCATTCCATAATTTGGCTCTCCAAGAAGATGGAACTTTATGGGCATGGGGTAATAATGAATATG
GACAACTTGGAACTGGTGACACACAACCAAGATCACAGCCAATTCCAGTCCAGGGGCTTTCAGGCCTTACTTTGTCTTGTTATATTCTTCGTCACCCTTGTTTATATGCG
TATGTCAGTTTGGGCGAGGTGACCATGGACAGCTTGGATATGGAAGGAAGGTCAAAGCCGGAATCAACTATCCATCTCTTTTGGGAGTGTAAACTAACGAAAGTTCATGG
CAGTCAACAACCCAACACAACAGTCCTCCAGCAACACATCAGCAGAAATTTGAAGAAATTCATAGGAGAAGATGAATTGTACCTGGTTACAGATGCTCCCGCGTCAATTC
GACCACCTATGACGCCGAAGGCAAATCACGAACCTGTGAATGTGTGTTGGCGATCAATACCAGCTGGTTTTTGGAAATTCAATAGTGACGCGACTTGGAAGGAGAAGGAT
TATCAAGGGGGAATCAGCTGGATCATCCGGCGGTGGGATGGCTCCATTGTGGCGGCAGGTTGCAGACACATTACTCAGCATTAG
Protein sequenceShow/hide protein sequence
MKKFDDRHRREVEFDVGDMVFLKIRPYRHTPLARRRNEKLSPKFFGPYKLKKQLGTTKTVQTIQPPLSEDFEWQAELDDIFACRKNQLNGETELLVSWKHIREHEATWMV
LSAFREQFPTYHVEDKVQLTPMVMLGPDGDEKQIFVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLSCYILRHPCLYA
YVSLGEVTMDSLDMEGRSKPESTIHLFWECKLTKVHGSQQPNTTVLQQHISRNLKKFIGEDELYLVTDAPASIRPPMTPKANHEPVNVCWRSIPAGFWKFNSDATWKEKD
YQGGISWIIRRWDGSIVAAGCRHITQH