CuGenDBv2

Gene ID	Lag0041888
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	E3 ubiquitin-protein ligase RHA1B
Genome location	chr13:30649936..30650592
RNA-Seq Expression	Lag0041888
Synteny	Lag0041888
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579522.1 Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia]

9.0e-04

79.41

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Query:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY
        DLD L AAVL E LPVV FSEL+DPPESC VCLY
Subjt:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY

KAG6606078.1 Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia]

9.0e-04

79.41

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Query:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY
        DLD L AAVL E LPVV FSEL+DPPESC VCLY
Subjt:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY

XP_022958594.1 E3 ubiquitin-protein ligase RHA1B-like [Cucurbita moschata]

9.0e-04

79.41

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Query:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY
        DLD L AAVL E LPVV FSEL+DPPESC VCLY
Subjt:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY

XP_023549736.1 E3 ubiquitin-protein ligase RHA1B [Cucurbita pepo subsp. pepo]

9.0e-04

79.41

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Query:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY
        DLD L AAVL E LPVV FSEL+DPPESC VCLY
Subjt:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY

XP_038906771.1 E3 ubiquitin-protein ligase RHA1B [Benincasa hispida]

9.0e-04

79.41

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Query:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY
        DLD L AAVL E LPVV FSEL+DPPESC VCLY
Subjt:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EQ05 E3 ubiquitin-protein ligase RHA1B

4.3e-04

79.41

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Query:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY
        DLD L AAVL E LPVV FSEL+DPPESC VCLY
Subjt:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY

A0A6J1H5J7 E3 ubiquitin-protein ligase RHA1B-like

4.3e-04

79.41

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Query:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY
        DLD L AAVL E LPVV FSEL+DPPESC VCLY
Subjt:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY

A0A6J1I1X7 E3 ubiquitin-protein ligase RHA1B-like

4.3e-04

79.41

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Query:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY
        DLD L AAVL E LPVV FSEL+DPPESC VCLY
Subjt:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY

A0A6J1K664 E3 ubiquitin-protein ligase RHA1B-like

4.3e-04

79.41

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Query:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY
        DLD L AAVL E LPVV FSEL+DPPESC VCLY
Subjt:  DLDSLLAAVLCETLPVVTFSELMDPPESCVVCLY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGACCTCGATTCTCTCCTCGCCGCTGTTCTCTGTGAGACTCTACCCGTCGTGACGTTTTCCGAGCTTATGGATCCGCCGGAGAGCTGCGTCGTGTGCCTCTACGANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCCCCCTTCGA
ATCGATTTCAGATCTGGGCGAGATTTGAAGTTCGTCAGTCCCACACAAACCCACGTGCGAGGCGATGGCGAGCTAGCCAACCTCGTTTTCTTCGAGTTTTCTTCTCCATT
TTCCTCTTTGAGCTGCTGCTGGGCATGCGATGCCGTCAAGATCTGACCCATAGAAACGCGCGTGCGACGGCAATGGCAGACGAAAACTCAAAAGCTCGAACAAGCCGTAG
AGAATTTTCCCCATATTTGTTTTTTTTCTCTCCCCTCCCCGTCGATCGTCTCTCTCTCGGTCAGTGGCGTGGGTCTCTCTCTTGGTCGGTGGCGTGGAAACGGGAGGAGG
GCCTTCGAAACGGCGACGACGGCCGAAACGCGGTTTTCAGCCTGTTGTTGTGGGTCTTTAGTACAGAGGGCAGAAACAATGGGTTTGAATCTCGATTTGAAGGCTGA

mRNA sequence

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Protein sequence

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MDLDSLLAAVLCETLPVVTFSELMDPPESCVVCLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPPSNRFQIWARFEVRQSHTNPRARRWRASQPRFLRVFFSI
FLFELLLGMRCRQDLTHRNARATAMADENSKARTSRREFSPYLFFFSPLPVDRLSLGQWRGSLSWSVAWKREEGLRNGDDGRNAVFSLLLWVFSTEGRNNGFESRFEG

Lag0041888 (gene) of Sponge gourd (AG-4) v1 genome