; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041900 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041900
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr13:30940425..30941051
RNA-Seq ExpressionLag0041900
SyntenyLag0041900
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7041153.1 unnamed protein product [Microthlaspi erraticum]4.2e-1126.94Show/hide
Query:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGSIWLEQA
        LWR+WK RNA +F+ K   ++  +     D  E+  +  E   G+++   S  R   + P     WI    D AW KE    GLGW +R  +G +    A
Subjt:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGSIWLEQA

Query:  ENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL
        +    +   + AE +AL   +   +    ++++ +SD+  ++N++N  E  P+  +P  +   HL+  F+     F  RE N  A  +A+  L
Subjt:  ENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL

EOA22050.1 hypothetical protein CARUB_v10002590mg, partial [Capsella rubella]3.2e-1126.8Show/hide
Query:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAG-EAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGSIWLEQ
        LWR+WK RN  IFK K  + ++ +   + D  E+ +  G +A+  R+    +   +  R P R   W+    D AW  E   SG+GW LR   G +    
Subjt:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAG-EAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGSIWLEQ

Query:  AENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL
        A+    + +++  E +A+   +     +  Q+++ +SD+L +VN++N  EN P  F P+       L      ++++  R  N  A  +A+  L
Subjt:  AENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL

XP_008386432.2 uncharacterized protein LOC103448950 [Malus domestica]3.2e-1127.73Show/hide
Query:  MEGKDNSDEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVLTI--RDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLW-----------IDAA
        ++ +++++  +     GLWR+WK RN V+FK      + N +LT+  +++GEYREA      G  +E     R +   P    LW            DA+
Subjt:  MEGKDNSDEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVLTI--RDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLW-----------IDAA

Query:  WIKETLSSGLGWSLRGPDGSIWLEQAENGGNSLNSMH----AEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFN
        W   +  +G GW +R   G +       GG+  ++ H    AE  A+  GL+     G + + V++DA  V+ ++N        FE I      L     
Subjt:  WIKETLSSGLGWSLRGPDGSIWLEQAENGGNSLNSMH----AEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFN

Query:  SCELLFVKRELNERAHMLAR
        S    FV RE N  AH +A+
Subjt:  SCELLFVKRELNERAHMLAR

XP_028945645.1 uncharacterized protein LOC114819986 [Malus domestica]2.0e-1329.74Show/hide
Query:  GLWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESG----SEERQVG--RGPDRLTLWI--DAAWIKETLSSGLGWSLRGPDGSI
        GLWR+WK +N +IFK  + +  + + L  R++GE++EA  +  I      G    +  R+ G  R P   T+ +  DAAW KETL +G+GW  R   G +
Subjt:  GLWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESG----SEERQVG--RGPDRLTLWI--DAAWIKETLSSGLGWSLRGPDGSI

Query:  WLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLAR
               G    ++  AE  A+   LE     G   + ++SDA  ++ ++  +       E  +     L  G  S    FV RE N  AH +A+
Subjt:  WLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLAR

XP_033148561.1 uncharacterized protein LOC117134373 [Brassica rapa]8.5e-1228.57Show/hide
Query:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWIDAAWIKETLSSGLGWSLRGPDGSIWLEQAENGG
        +W +W  RN  IF+N++      +   I D  E+++A  + +     +     R       R T++ DAAW KE+L++GL WS     G+I  + +    
Subjt:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWIDAAWIKETLSSGLGWSLRGPDGSIWLEQAENGG

Query:  NSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCEL-----LFVKRELNERAHMLARNGLCN
           ++  AEG A+   L  A+  G+  + +KSDA  +V  +N +E+    F  ++D   H L    SC+L     +F+ R  N  A  LA+  L N
Subjt:  NSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCEL-----LFVKRELNERAHMLARNGLCN

TrEMBL top hitse value%identityAlignment
A0A2I4HQV1 uncharacterized protein LOC1090205162.5e-0930.53Show/hide
Query:  PDRLTLWIDAAWIKETLSSGLGWSLRGPDGSIWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFC
        P    L +D A     L +G+G  LR   G + +  A+     LN++  EG A++ GL+ +  +GI  L+++SD+L VVN    + +             
Subjt:  PDRLTLWIDAAWIKETLSSGLGWSLRGPDGSIWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFC

Query:  HLLEGFNSCELLFVKRELNERAHMLARNGLC
         L+  F+SC + +  R  N  AH LA+ GLC
Subjt:  HLLEGFNSCELLFVKRELNERAHMLARNGLC

A0A6D2JVB2 Uncharacterized protein2.1e-1126.94Show/hide
Query:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGSIWLEQA
        LWR+WK RNA +F+ K   ++  +     D  E+  +  E   G+++   S  R   + P     WI    D AW KE    GLGW +R  +G +    A
Subjt:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGSIWLEQA

Query:  ENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL
        +    +   + AE +AL   +   +    ++++ +SD+  ++N++N  E  P+  +P  +   HL+  F+     F  RE N  A  +A+  L
Subjt:  ENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL

A0A6J0L2M9 uncharacterized protein LOC1088253212.1e-1125.76Show/hide
Query:  DEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEY--REAAGEAVIGRREESGSEERQVGRGPDRLTLWIDAAWIKETLSSGLGWSLRGPD
        DE++ YL   LWR+WK RN  +F+ K  +    ++    D  E+  RE      + +  E G + +     P ++   ID +W KET   G+GW  R   
Subjt:  DEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEY--REAAGEAVIGRREESGSEERQVGRGPDRLTLWIDAAWIKETLSSGLGWSLRGPD

Query:  GSIWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLAR
        G++    A+   N+ + +  E +AL   ++     G   ++ ++D+L +  ++ G+E   +  +PI      LL   +   + F  R  N+ A  +AR
Subjt:  GSIWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLAR

A0A6J5U395 Uncharacterized protein8.6e-1026.44Show/hide
Query:  KDNSDEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVLTIR---DVGEYREAAGEAVIGRREESGSEERQVGRGP------DRLTLWIDAAWIKETLS
        +   DE L  + +GLWR+WK RN+++F+ +       + + I+   D  + RE   E      +  G E R +G         D + +  D AW  +TL 
Subjt:  KDNSDEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVLTIR---DVGEYREAAGEAVIGRREESGSEERQVGRGP------DRLTLWIDAAWIKETLS

Query:  SGLGWSLRGPDGSIWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKREL
         G GW +R   G       E G     ++ AE +AL  GL      G Q ++++SD+  +++++ G        E I      L+    +  L FV R  
Subjt:  SGLGWSLRGPDGSIWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKREL

Query:  NERAHMLA
        N+ A ++A
Subjt:  NERAHMLA

R0HAP3 RNase H domain-containing protein (Fragment)1.6e-1126.8Show/hide
Query:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAG-EAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGSIWLEQ
        LWR+WK RN  IFK K  + ++ +   + D  E+ +  G +A+  R+    +   +  R P R   W+    D AW  E   SG+GW LR   G +    
Subjt:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAG-EAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGSIWLEQ

Query:  AENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL
        A+    + +++  E +A+   +     +  Q+++ +SD+L +VN++N  EN P  F P+       L      ++++  R  N  A  +A+  L
Subjt:  AENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein1.5e-0926.29Show/hide
Query:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWIDAAWIKETLSSGL---------GWSLRGPDGSI
        +WR+WK RN  +F+ K    +      I+D  E+   A E          +   Q  R            W+K    SG          GW++R  +G I
Subjt:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWIDAAWIKETLSSGL---------GWSLRGPDGSI

Query:  WLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLA
         L       +S  S+HAE    +  L+     G++ +  +SD+  +V ++N  E+  +    IYD   H +     C L FV RE N  A  LA
Subjt:  WLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLA

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.0e-1227.08Show/hide
Query:  LWRVWKERNAVIFKNK---APEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWIDAAWIKETLSSGLGWSLRGPDGSIWLEQAE
        LWR+WK RN ++FK K   APE+    +    +    RE  G+A  G + E     +        +    DA W  E    G+GW LR   G +    A 
Subjt:  LWRVWKERNAVIFKNK---APEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWIDAAWIKETLSSGLGWSLRGPDGSIWLEQAE

Query:  NGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL
            + N + AE +AL   +        + ++ +SDA  +VN++N  +  P   +P  +    LL  F   +  F  R  N+ A  +AR  +
Subjt:  NGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGL

AT3G25270.1 Ribonuclease H-like superfamily protein4.2e-0924.52Show/hide
Query:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGE------YREAAGEAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGS
        LWR+WK RN ++F+ K+   +N +     DV E      Y ++  + V   R +  +  R   + P   + WI    D A+  +T ++  GW +R  +G 
Subjt:  LWRVWKERNAVIFKNKAPEIENNIVLTIRDVGE------YREAAGEAVIGRREESGSEERQVGRGPDRLTLWI----DAAWIKETLSSGLGWSLRGPDGS

Query:  IWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKE
                G  + +S+ +E +AL+  ++ A + G ++++ + D+ +V  +MN ++
Subjt:  IWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKE

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-0931.01Show/hide
Query:  DRLTLWIDAAWIKETLSSGLGWSLRGPDGSIWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCH
        DR+T++ DAAW  ET   G GW +R       L       N    + AE  AL   L+ A+++GI +L + SD+ +++  +   E+   +F  I     +
Subjt:  DRLTLWIDAAWIKETLSSGLGWSLRGPDGSIWLEQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCH

Query:  LLEGFNSCELLFVKRELNERAHMLARNGL
        L  GF      FV R  N  A  LA++ L
Subjt:  LLEGFNSCELLFVKRELNERAHMLARNGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGGAAGGATAATTCGGATGAGGCCCTCTGTTACTTAGGACATGGGTTGTGGAGGGTTTGGAAGGAAAGGAATGCGGTGATTTTCAAAAACAAGGCCCCGGAAAT
TGAGAATAACATTGTACTCACCATCAGAGATGTTGGTGAATACAGAGAAGCTGCGGGGGAGGCAGTAATTGGTAGGCGAGAAGAGTCGGGCAGTGAGGAGCGGCAGGTGG
GTCGAGGTCCAGATCGGTTGACTTTGTGGATAGATGCTGCATGGATAAAGGAGACTTTATCGTCTGGATTGGGCTGGTCATTGCGAGGCCCTGATGGAAGCATTTGGCTG
GAACAGGCAGAAAATGGTGGGAACAGTTTGAACAGCATGCATGCAGAGGGAAAAGCATTAGTTCGTGGCCTGGAATGCGCGAAGACGATGGGCATTCAAGAGCTGCTTGT
TAAGTCTGATGCTTTGCGAGTGGTGAACGTCATGAATGGGAAGGAAAACTGCCCAGTGGACTTTGAACCAATATATGATTGCTTTTGTCATCTACTTGAGGGTTTTAATT
CTTGCGAATTGTTATTTGTCAAGAGGGAGCTCAATGAGAGAGCTCATATGTTAGCCAGGAATGGCCTTTGTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGGAAGGATAATTCGGATGAGGCCCTCTGTTACTTAGGACATGGGTTGTGGAGGGTTTGGAAGGAAAGGAATGCGGTGATTTTCAAAAACAAGGCCCCGGAAAT
TGAGAATAACATTGTACTCACCATCAGAGATGTTGGTGAATACAGAGAAGCTGCGGGGGAGGCAGTAATTGGTAGGCGAGAAGAGTCGGGCAGTGAGGAGCGGCAGGTGG
GTCGAGGTCCAGATCGGTTGACTTTGTGGATAGATGCTGCATGGATAAAGGAGACTTTATCGTCTGGATTGGGCTGGTCATTGCGAGGCCCTGATGGAAGCATTTGGCTG
GAACAGGCAGAAAATGGTGGGAACAGTTTGAACAGCATGCATGCAGAGGGAAAAGCATTAGTTCGTGGCCTGGAATGCGCGAAGACGATGGGCATTCAAGAGCTGCTTGT
TAAGTCTGATGCTTTGCGAGTGGTGAACGTCATGAATGGGAAGGAAAACTGCCCAGTGGACTTTGAACCAATATATGATTGCTTTTGTCATCTACTTGAGGGTTTTAATT
CTTGCGAATTGTTATTTGTCAAGAGGGAGCTCAATGAGAGAGCTCATATGTTAGCCAGGAATGGCCTTTGTAATTAG
Protein sequenceShow/hide protein sequence
MEGKDNSDEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVLTIRDVGEYREAAGEAVIGRREESGSEERQVGRGPDRLTLWIDAAWIKETLSSGLGWSLRGPDGSIWL
EQAENGGNSLNSMHAEGKALVRGLECAKTMGIQELLVKSDALRVVNVMNGKENCPVDFEPIYDCFCHLLEGFNSCELLFVKRELNERAHMLARNGLCN