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Lag0041907 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041907
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr13:31104508..31104834
RNA-Seq ExpressionLag0041907
SyntenyLag0041907
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]3.2e-1042.11Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIELDLEEVAQ+NHA     +   +    + +Q   LLQ GT EP+ + FH EV+ + SQ+   L+ + ++G  ++TR KK+   L+QK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

KAA0047151.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.6e-0943.75Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSL-HDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIELDLEEVAQ+NH   T  I ++  +  L  +Q   L+Q GT EP  + FH E++ +  Q+   LV + ++G IV+TR KK+    VQK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSL-HDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

KAA0053192.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.5e-0941.67Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSL-HDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIE+DLEEVAQ+NH      I ++  F  L  +Q   L+Q  T EP+ + FH EV+ + SQ     + + ++G IV+TR KK+   L+QK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSL-HDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

KAA0056396.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-0940Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIELDLEEVAQ+NHA     +   +    + +Q   L+Q GT EP+ + FH EV+ + SQ+T  L+ + ++G  ++T  KK+    +QK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

KAA0062536.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-1042.11Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIELDLEEVAQ+NHA T   +   +    + +Q   L+Q GT EP+ + FH EV+ + SQ+   L+ + ++G I++TR KK+    +QK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

TrEMBL top hitse value%identityAlignment
A0A5A7U0N3 Retrotransposon gag protein2.2e-0943.75Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSL-HDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIELDLEEVAQ+NH   T  I ++  +  L  +Q   L+Q GT EP  + FH E++ +  Q+   LV + ++G IV+TR KK+    VQK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSL-HDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

A0A5A7UBT4 Retrotransposon gag protein1.7e-0941.67Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSL-HDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIE+DLEEVAQ+NH      I ++  F  L  +Q   L+Q  T EP+ + FH EV+ + SQ     + + ++G IV+TR KK+   L+QK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSL-HDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

A0A5A7V7Z6 Ty3-gypsy retrotransposon protein1.5e-1042.11Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIELDLEEVAQ+NHA T   +   +    + +Q   L+Q GT EP+ + FH EV+ + SQ+   L+ + ++G I++TR KK+    +QK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

A0A5D3BSG5 Uncharacterized protein1.5e-1042.11Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIELDLEEVAQ+NHA     +   +    + +Q   LLQ GT EP+ + FH EV+ + SQ+   L+ + ++G  ++TR KK+   L+QK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

A0A5D3DZS9 Retrotransposon gag protein1.3e-0940Show/hide
Query:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK
        +LA+E KIELDLEEVAQ+NHA     +   +    + +Q   L+Q GT EP+ + FH EV+ + SQ+T  L+ + ++G  ++T  KK+    +QK
Subjt:  QLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCAGTTAGCTAAAGAAGGAAAAATCGAGTTGGATCTTGAGGAAGTAGCTCAATCAAATCATGCTACAACAACAACAAACATTTGTAATCAAATGTGTTTTGATTC
GCTTCATGATCAAGAGATGCACCTACTCCAAATTGGGACCTTGGAGCCTATAGCTATTTGGTTTCACCATGAGGTATCAGGAGACAAATCTCAAGATACGGTCAATCTTG
TCAGGGATGCAAATAAAGGAAGTATTGTCATGACTCGTCTGAAGAAACAAGGACAACATCTTGTTCAGAAAGGATGTTGCTCATCCAAAAGAGAGAATAGACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCAGTTAGCTAAAGAAGGAAAAATCGAGTTGGATCTTGAGGAAGTAGCTCAATCAAATCATGCTACAACAACAACAAACATTTGTAATCAAATGTGTTTTGATTC
GCTTCATGATCAAGAGATGCACCTACTCCAAATTGGGACCTTGGAGCCTATAGCTATTTGGTTTCACCATGAGGTATCAGGAGACAAATCTCAAGATACGGTCAATCTTG
TCAGGGATGCAAATAAAGGAAGTATTGTCATGACTCGTCTGAAGAAACAAGGACAACATCTTGTTCAGAAAGGATGTTGCTCATCCAAAAGAGAGAATAGACATTGA
Protein sequenceShow/hide protein sequence
MHQLAKEGKIELDLEEVAQSNHATTTTNICNQMCFDSLHDQEMHLLQIGTLEPIAIWFHHEVSGDKSQDTVNLVRDANKGSIVMTRLKKQGQHLVQKGCCSSKRENRH