; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041910 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041910
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr13:31168833..31176911
RNA-Seq ExpressionLag0041910
SyntenyLag0041910
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]1.1e-0968.09Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRKK
        DCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R +
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRKK
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]4.2e-0969.57Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRK
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R+
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRK
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0580.65Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWE
        DCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]5.8e-1171.74Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRK
        DCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  RK
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRK
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-0633.33Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRKKSLEFSAPTSSQRVLPLRIPVQSSGSVRGDFSSENKD---RLLVFLGAIRR---
        DCPLICTGESG  ADSI L FWGQDRVG W+          P + ++    +  T+++R++ L+         R D S  +K     L+     I R   
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRKKSLEFSAPTSSQRVLPLRIPVQSSGSVRGDFSSENKD---RLLVFLGAIRR---

Query:  KFGETIKSFFKVEDPQSVPRPEDSREDPS
        +F +    F +V  P + PR       P+
Subjt:  KFGETIKSFFKVEDPQSVPRPEDSREDPS
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein5.3e-1068.09Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRKK
        DCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R +
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRKK
A0A5A7U202 Reverse transcriptase1.0e-0580.65Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWE
        DCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWE
A0A5A7U2P4 Integrase catalytic domain-containing protein2.0e-0969.57Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRK
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R+
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRK
A0A5D3C3J6 Gag/pol protein2.8e-1171.74Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRK
        DCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  RK
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRK
A0A5D3CBX3 Reverse transcriptase1.6e-0633.33Show/hide
Query:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRKKSLEFSAPTSSQRVLPLRIPVQSSGSVRGDFSSENKD---RLLVFLGAIRR---
        DCPLICTGESG  ADSI L FWGQDRVG W+          P + ++    +  T+++R++ L+         R D S  +K     L+     I R   
Subjt:  DCPLICTGESGMFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRKKSLEFSAPTSSQRVLPLRIPVQSSGSVRGDFSSENKD---RLLVFLGAIRR---

Query:  KFGETIKSFFKVEDPQSVPRPEDSREDPS
        +F +    F +V  P + PR       P+
Subjt:  KFGETIKSFFKVEDPQSVPRPEDSREDPS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATGCCGAGACGGTGAAAGACCTAAGTGGAGTGCTCGGGCCTCGAAACGACGCCAAACGGATCAAGTTTTGAAGCAGCCAAACAAGGAAGACTTGAGAGATGGTGT
CTCGATGTCATCCTCAGGCGTCTTGACGCCTCGGAAACGAGGGACCGATGAGTTCATCGTCGGCGTCGAGACGGATAAGGCTGGCTACCTTGTCCTGGTGACATTATGGA
TACGACCCGCTTTGTATATTGATACAAACGTAGTGATCAAACCCGTTCATGTGGTTGACATGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCATGTTCGCCGACTCA
ATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCCGATATTAGGAAAAAATCCTTAGAGTTTTCGGC
TCCCACAAGCTCTCAACGTGTACTCCCTTTGAGAATACCGGTGCAATCAAGTGGTAGTGTTCGTGGTGATTTTTCCAGCGAAAACAAGGATCGCTTGCTGGTGTTTTTGG
GAGCAATTCGGAGAAAATTTGGCGAAACGATCAAGAGTTTCTTCAAAGTTGAGGATCCACAGTCTGTTCCAAGGCCTGAGGATAGTAGAGAAGATCCAAGTGGTTGTCCA
AGATCCATTGGTGTGAAGAAACAACTCAAGGATTGCACGAATTGGGAGCTACAAGAGACAGTCAACGGCGAAAGCTGGAAAAGTCGTCGGCGCGTGGTGGCGGTTGTCGA
AAATAAGAAAAAAAGGAACAAGTTTCGGTCGACGACGATAGTGGCAGCCGGTAGTCGGAGGTCGACGGTGGCATCTGGTAGTCAGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATGCCGAGACGGTGAAAGACCTAAGTGGAGTGCTCGGGCCTCGAAACGACGCCAAACGGATCAAGTTTTGAAGCAGCCAAACAAGGAAGACTTGAGAGATGGTGT
CTCGATGTCATCCTCAGGCGTCTTGACGCCTCGGAAACGAGGGACCGATGAGTTCATCGTCGGCGTCGAGACGGATAAGGCTGGCTACCTTGTCCTGGTGACATTATGGA
TACGACCCGCTTTGTATATTGATACAAACGTAGTGATCAAACCCGTTCATGTGGTTGACATGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCATGTTCGCCGACTCA
ATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCCGATATTAGGAAAAAATCCTTAGAGTTTTCGGC
TCCCACAAGCTCTCAACGTGTACTCCCTTTGAGAATACCGGTGCAATCAAGTGGTAGTGTTCGTGGTGATTTTTCCAGCGAAAACAAGGATCGCTTGCTGGTGTTTTTGG
GAGCAATTCGGAGAAAATTTGGCGAAACGATCAAGAGTTTCTTCAAAGTTGAGGATCCACAGTCTGTTCCAAGGCCTGAGGATAGTAGAGAAGATCCAAGTGGTTGTCCA
AGATCCATTGGTGTGAAGAAACAACTCAAGGATTGCACGAATTGGGAGCTACAAGAGACAGTCAACGGCGAAAGCTGGAAAAGTCGTCGGCGCGTGGTGGCGGTTGTCGA
AAATAAGAAAAAAAGGAACAAGTTTCGGTCGACGACGATAGTGGCAGCCGGTAGTCGGAGGTCGACGGTGGCATCTGGTAGTCAGGGTTGA
Protein sequenceShow/hide protein sequence
MGCRDGERPKWSARASKRRQTDQVLKQPNKEDLRDGVSMSSSGVLTPRKRGTDEFIVGVETDKAGYLVLVTLWIRPALYIDTNVVIKPVHVVDMDCPLICTGESGMFADS
ISLPFWGQDRVGSWERSLTRWNSLLPDIRKKSLEFSAPTSSQRVLPLRIPVQSSGSVRGDFSSENKDRLLVFLGAIRRKFGETIKSFFKVEDPQSVPRPEDSREDPSGCP
RSIGVKKQLKDCTNWELQETVNGESWKSRRRVVAVVENKKKRNKFRSTTIVAAGSRRSTVASGSQG