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Lag0042053 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042053
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr13:35542034..35547596
RNA-Seq ExpressionLag0042053
SyntenyLag0042053
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]4.1e-2165.38Show/hide
Query:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRI
        L  M +K  ESFKEY QRW+  TA+V P LT+KE+T+MF+NTL +P+Y+RMIGNASTNFSDI++I E IEYG+KHGR+
Subjt:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRI

TYK05802.1 uncharacterized protein E5676_scaffold98G003080 [Cucumis melo var. makuwa]2.8e-2243.83Show/hide
Query:  QNVEQSHEQAMKILSLLE--NGETVADVSQPDIPINNPGDSPHLHKLEISLCQPTRDFTQPQSSPPFNKLSNMGRKEPESFKEYVQRWRYTTAQVHPSLT
        Q+VE   +Q  KIL LL    G++V   S                ++E++L Q   D    +       L  M +K  E+FKEY QRWR   +QV P LT
Subjt:  QNVEQSHEQAMKILSLLE--NGETVADVSQPDIPINNPGDSPHLHKLEISLCQPTRDFTQPQSSPPFNKLSNMGRKEPESFKEYVQRWRYTTAQVHPSLT

Query:  NKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQR
        NKELT MF+NTL  PYYDRM+G+ASTNFSDI+ I E IE+GVK+GRIFD   +++   T ++
Subjt:  NKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQR

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]4.1e-2158.16Show/hide
Query:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQRINKSK
        L  M +K  ESFKEY QRWR T AQV P LT+KEL+ MF+NTL+ P+YDRM+G+ASTNFSDIM I E IEYGV+HGRI   A +    K      K +
Subjt:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQRINKSK

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]2.8e-2264.77Show/hide
Query:  SNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKK
        +++  K  E+FKEY QRWR   AQ+   LTNKELTTMF+NTL SPYYDRMIGNAST+FSDI+ IEE IEYGVK+GRI D    +  KK
Subjt:  SNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKK

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]6.3e-2260.2Show/hide
Query:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQRINKSK
        L  M +K  ESFKEY QRWR T AQV P LT+KEL+ MF+NTL+ P+YDRMIGNASTNFSDIM I E IEYGV+HGRI     +    K A    K +
Subjt:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQRINKSK

TrEMBL top hitse value%identityAlignment
A0A5A7V3W7 Retrotrans_gag domain-containing protein2.0e-2165.38Show/hide
Query:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRI
        L  M +K  ESFKEY QRW+  TA+V P LT+KE+T+MF+NTL +P+Y+RMIGNASTNFSDI++I E IEYG+KHGR+
Subjt:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRI

A0A5D3C3K5 Uncharacterized protein1.4e-2243.83Show/hide
Query:  QNVEQSHEQAMKILSLLE--NGETVADVSQPDIPINNPGDSPHLHKLEISLCQPTRDFTQPQSSPPFNKLSNMGRKEPESFKEYVQRWRYTTAQVHPSLT
        Q+VE   +Q  KIL LL    G++V   S                ++E++L Q   D    +       L  M +K  E+FKEY QRWR   +QV P LT
Subjt:  QNVEQSHEQAMKILSLLE--NGETVADVSQPDIPINNPGDSPHLHKLEISLCQPTRDFTQPQSSPPFNKLSNMGRKEPESFKEYVQRWRYTTAQVHPSLT

Query:  NKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQR
        NKELT MF+NTL  PYYDRM+G+ASTNFSDI+ I E IE+GVK+GRIFD   +++   T ++
Subjt:  NKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQR

A0A6J1CNY7 Ribonuclease H2.0e-2158.16Show/hide
Query:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQRINKSK
        L  M +K  ESFKEY QRWR T AQV P LT+KEL+ MF+NTL+ P+YDRM+G+ASTNFSDIM I E IEYGV+HGRI   A +    K      K +
Subjt:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQRINKSK

A0A6J1DV70 uncharacterized protein LOC1110243601.4e-2264.77Show/hide
Query:  SNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKK
        +++  K  E+FKEY QRWR   AQ+   LTNKELTTMF+NTL SPYYDRMIGNAST+FSDI+ IEE IEYGVK+GRI D    +  KK
Subjt:  SNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKK

A0A6J1E2J7 Ribonuclease H3.1e-2260.2Show/hide
Query:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQRINKSK
        L  M +K  ESFKEY QRWR T AQV P LT+KEL+ MF+NTL+ P+YDRMIGNASTNFSDIM I E IEYGV+HGRI     +    K A    K +
Subjt:  LSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEYGVKHGRIFDNAIKSKTKKTAQRINKSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACGGCATTGACCCTCTTAAAAAAAGTCCCCAGTGGAGTCGCCAAGCTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGGTCTCTTTCG
AGTCTCACTTAGGAACTTTGTTGGAATAACGGAAAGCGGCGGCACGGTGGCGGCGGCAGTGGCGGCGGCGACAGTGGTGGCGGCGCGGTACGGCAGTGAGTGGCGGCGTC
GGCTACAAGGCAAAGACATGGAAGGACAAAATGTTGAACAGTCTCATGAACAAGCCATGAAAATTCTTTCTCTTTTGGAGAATGGTGAAACAGTGGCAGATGTCTCTCAA
CCTGACATCCCAATCAATAATCCTGGTGACTCACCTCATTTGCACAAGTTGGAAATATCTCTTTGTCAGCCAACTAGAGATTTCACTCAACCACAGTCATCACCCCCCTT
CAACAAGCTATCAAACATGGGGAGGAAGGAACCCGAGAGCTTTAAAGAATATGTTCAAAGGTGGAGGTATACAACTGCACAAGTACACCCATCTTTAACTAACAAGGAAT
TGACAACTATGTTCCTTAATACCCTTGAATCTCCCTACTATGATCGAATGATAGGAAATGCATCCACCAATTTTTCAGACATCATGATGATTGAAGAAATAATAGAATAT
GGGGTTAAGCATGGAAGGATATTCGATAATGCAATTAAATCGAAGACGAAGAAGACTGCTCAAAGGATCAACAAGTCCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACGGCATTGACCCTCTTAAAAAAAGTCCCCAGTGGAGTCGCCAAGCTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGGTCTCTTTCG
AGTCTCACTTAGGAACTTTGTTGGAATAACGGAAAGCGGCGGCACGGTGGCGGCGGCAGTGGCGGCGGCGACAGTGGTGGCGGCGCGGTACGGCAGTGAGTGGCGGCGTC
GGCTACAAGGCAAAGACATGGAAGGACAAAATGTTGAACAGTCTCATGAACAAGCCATGAAAATTCTTTCTCTTTTGGAGAATGGTGAAACAGTGGCAGATGTCTCTCAA
CCTGACATCCCAATCAATAATCCTGGTGACTCACCTCATTTGCACAAGTTGGAAATATCTCTTTGTCAGCCAACTAGAGATTTCACTCAACCACAGTCATCACCCCCCTT
CAACAAGCTATCAAACATGGGGAGGAAGGAACCCGAGAGCTTTAAAGAATATGTTCAAAGGTGGAGGTATACAACTGCACAAGTACACCCATCTTTAACTAACAAGGAAT
TGACAACTATGTTCCTTAATACCCTTGAATCTCCCTACTATGATCGAATGATAGGAAATGCATCCACCAATTTTTCAGACATCATGATGATTGAAGAAATAATAGAATAT
GGGGTTAAGCATGGAAGGATATTCGATAATGCAATTAAATCGAAGACGAAGAAGACTGCTCAAAGGATCAACAAGTCCAAGTAA
Protein sequenceShow/hide protein sequence
MKTALTLLKKVPSGVAKLSQRHRDAERPTSFPKGLFRVSLRNFVGITESGGTVAAAVAAATVVAARYGSEWRRRLQGKDMEGQNVEQSHEQAMKILSLLENGETVADVSQ
PDIPINNPGDSPHLHKLEISLCQPTRDFTQPQSSPPFNKLSNMGRKEPESFKEYVQRWRYTTAQVHPSLTNKELTTMFLNTLESPYYDRMIGNASTNFSDIMMIEEIIEY
GVKHGRIFDNAIKSKTKKTAQRINKSK