CuGenDBv2

Gene ID	Lag0042055
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr13:35598385..35598987
RNA-Seq Expression	Lag0042055
Synteny	Lag0042055
Gene Ontology terms	GO:0034641 - cellular nitrogen compound metabolic process (biological process) GO:0071704 - organic substance metabolic process (biological process)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.7e-39

45.23

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Query:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW
        S+  ++  + N   SS I      G+K + VKL+++ FLLWK Q+LT L  Y LE FL+++S  P K + ST  ++A+   T NP Y+ W RQD LI++W
Subjt:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW

Query:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        LLGSM+  +L++ML CK+A+E+W+ L   FSS  +A+ M  K+KL  +KKGS+ L+EYFLKI   VD+L +  + +S +DHI++ILA LG  Y S +SV
Subjt:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

1.3e-38

44.72

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Query:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW
        S+  ++  + N   SS I       +K + VKL ++NFLLWK Q+LT L  Y LE FL+++S  P K + ST  ++A+  +T NP Y+ W RQD LI++W
Subjt:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW

Query:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        LLGSM+  +L++ML CK+A+E+W  L   FSS  +A+ M  K+KL  +KK S+ L+EYFLKI++ VD+L +  + +S +DHI++ILA LG  Y S +SV
Subjt:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.7e-39

45.23

Show/hide

Query:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW
        S+  ++  + N   SS I      G+K + VKL+++ FLLWK Q+LT L  Y LE FL+++S  P K + ST  ++A+   T NP Y+ W RQD LI++W
Subjt:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW

Query:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        LLGSM+  +L++ML CK+A+E+W+ L   FSS  +A+ M  K+KL  +KKGS+ L+EYFLKI   VD+L +  + +S +DHI++ILA LG  Y S +SV
Subjt:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]

3.8e-49

52.91

Show/hide

Query:  DLSNFSQSSKIENPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLL
        D +   Q+SK  NPG K + V+L+++N LLWK Q+ T L+G GLE ++D++   P + + +T   +   +L  NP Y  WI+QD LI+ WLLGSM   +L
Subjt:  DLSNFSQSSKIENPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLL

Query:  SEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        S+MLDCK+ARE+W +L   F+S  +ARVM LK KLE  KKG+L L++YFLKIKNLVDSL  AG+K+S EDHIMHILA LGP++D+ +SV
Subjt:  SEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

XP_022156747.1 uncharacterized protein LOC111023586 [Momordica charantia]

6.2e-44

56.96

Show/hide

Query:  KLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDL
        K QVLT ++G+GLEQ++D+D   P + I + +  T   T   NP+Y +WI+QD LI+ WLLGSM+  +LS+MLDC+  +E+W +L   F+S N+ARVM L
Subjt:  KLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDL

Query:  KSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        KSKLE MKKGS+ L+ YFLKIKNLVDSL  AG+++  +DHIMHILARLGP++DS VSV
Subjt:  KSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-39

45.23

Show/hide

Query:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW
        S+  ++  + N   SS I      G+K + VKL+++ FLLWK Q+LT L  Y LE FL+++S  P K + ST  ++A+   T NP Y+ W RQD LI++W
Subjt:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW

Query:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        LLGSM+  +L++ML CK+A+E+W+ L   FSS  +A+ M  K+KL  +KKGS+ L+EYFLKI   VD+L +  + +S +DHI++ILA LG  Y S +SV
Subjt:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-39

45.23

Show/hide

Query:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW
        S+  ++  + N   SS I      G+K + VKL+++ FLLWK Q+LT L  Y LE FL+++S  P K + ST  ++A+   T NP Y+ W RQD LI++W
Subjt:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW

Query:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        LLGSM+  +L++ML CK+A+E+W+ L   FSS  +A+ M  K+KL  +KKGS+ L+EYFLKI   VD+L +  + +S +DHI++ILA LG  Y S +SV
Subjt:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like

6.5e-39

44.72

Show/hide

Query:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW
        S+  ++  + N   SS I       +K + VKL ++NFLLWK Q+LT L  Y LE FL+++S  P K + ST  ++A+  +T NP Y+ W RQD LI++W
Subjt:  STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTW

Query:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        LLGSM+  +L++ML CK+A+E+W  L   FSS  +A+ M  K+KL  +KK S+ L+EYFLKI++ VD+L +  + +S +DHI++ILA LG  Y S +SV
Subjt:  LLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

A0A6J1DLT9 uncharacterized protein LOC111021757

1.8e-49

52.91

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Query:  DLSNFSQSSKIENPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLL
        D +   Q+SK  NPG K + V+L+++N LLWK Q+ T L+G GLE ++D++   P + + +T   +   +L  NP Y  WI+QD LI+ WLLGSM   +L
Subjt:  DLSNFSQSSKIENPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLL

Query:  SEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        S+MLDCK+ARE+W +L   F+S  +ARVM LK KLE  KKG+L L++YFLKIKNLVDSL  AG+K+S EDHIMHILA LGP++D+ +SV
Subjt:  SEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

A0A6J1DSS1 uncharacterized protein LOC111023586

3.0e-44

56.96

Show/hide

Query:  KLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDL
        K QVLT ++G+GLEQ++D+D   P + I + +  T   T   NP+Y +WI+QD LI+ WLLGSM+  +LS+MLDC+  +E+W +L   F+S N+ARVM L
Subjt:  KLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDL

Query:  KSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV
        KSKLE MKKGS+ L+ YFLKIKNLVDSL  AG+++  +DHIMHILARLGP++DS VSV
Subjt:  KSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

8.0e-18

29.88

Show/hide

Query:  KLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSC
        KL   N+L+W  QV     GY L  FLD  + +PP +I  T+AA     +NPDY  W RQD LI + +LG+++ S+   +    TA ++W+ L   +++ 
Subjt:  KLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSC

Query:  NMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTV
        +   V  L+++L+   KG+  +++Y   +    D L   G+ + H++ +  +L  L  +Y   +
Subjt:  NMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

5.5e-11

26.83

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Query:  KLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSC
        KL   N+L+W  QV     GY L  FLD  + +PP +I  T+A      +NPDY  W RQD LI + +LG+++ S+   +    TA ++W+ L   +++ 
Subjt:  KLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSC

Query:  NMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTV
        +   V                     L+     D L   G+ + H++ +  +L  L   Y   +
Subjt:  NMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTV

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

5.7e-11

27.69

Show/hide

Query:  DEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNM
        DE+N++ WK++  + LR      F+D     P                +P YQ W + ++++  WL+ SMT+ LL  ++  +TA ++W+ L   F  C  
Subjt:  DEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNM

Query:  ARVMDLKSKLETMKKGSLKLEEYFLKIKNL
         ++  L+ +L T+++G   +EEYF K+  +
Subjt:  ARVMDLKSKLETMKKGSLKLEEYFLKIKNL

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

3.3e-11

23.43

Show/hide

Query:  HKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMT-NSLLSEMLDCKTAREVWKIL
        H    + ++E N+  W+   LT    + +   +D        ++  TNA             W ++D ++   L G++T        +   T+R++W  +
Subjt:  HKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMT-NSLLSEMLDCKTAREVWKIL

Query:  NARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSVRK
          +F +   AR + L S+L T   G +++ +Y+ K+K L DSL      ++  + +M++L  L PK+D+ ++V K
Subjt:  NARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSVRK

Sequences

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CDS sequence

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ATGGAGTCTTCAACAAACAAGACGATACCAGATCTCTCAAATTTCTCTCAATCTTCAAAAATAGAAAACCCAGGCCATAAAACTACCTCGGTTAAACTTGATGAAGAGAA
CTTCCTCCTGTGGAAACTTCAGGTGCTTACCAAGCTTCGAGGATATGGATTGGAACAATTTCTTGATAACGATTCTGCAATTCCTCCTAAATCCATTGCTTCTACAAATG
CTGCAACGTTTGAACAAACTTTAAATCCTGATTATCAGTATTGGATTCGCCAAGACAGCTTGATTACGACGTGGCTCTTGGGTTCTATGACGAACTCACTCCTGTCTGAG
ATGTTAGACTGCAAAACTGCTCGTGAGGTATGGAAAATTCTTAATGCCCGTTTTTCTTCGTGCAATATGGCTAGAGTTATGGACCTTAAATCAAAACTTGAGACAATGAA
GAAAGGTAGTTTAAAGCTTGAAGAATATTTTTTGAAAATTAAGAATCTTGTGGACTCACTAACAGCAGCTGGTCGAAAAATATCACATGAGGATCACATAATGCACATTT
TAGCAAGATTGGGGCCGAAATATGATTCTACAGTATCAGTCAGAAAAAGATGA

mRNA sequence

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Protein sequence

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MESSTNKTIPDLSNFSQSSKIENPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSE
MLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSVRKR

Lag0042055 (gene) of Sponge gourd (AG-4) v1 genome