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Lag0042065 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042065
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr13:35828693..35829889
RNA-Seq ExpressionLag0042065
SyntenyLag0042065
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040846.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa]1.4e-2357.65Show/hide
Query:  EPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ
        E WC GGDFN+TRW+HERFP  R ++GMR FN  +E+  L+EIPL N ++TWSR G   +R  +DRF++NK WD  F+N+RASRQ
Subjt:  EPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ

TYJ98683.1 hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa]2.3e-2649.53Show/hide
Query:  PNNYRERRHLWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFD
        P +Y ERR +W  L SL  YC   WC+GG  N+TRW HE FP  + ++GMR FN  I+ + + E+PL NG+ TWSR G+  SRSL+D F ++KEWD++ +
Subjt:  PNNYRERRHLWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFD

Query:  NSRASRQ
        NSR  R+
Subjt:  NSRASRQ

TYK03825.1 exodeoxyribonuclease-like [Cucumis melo var. makuwa]1.2e-2260.49Show/hide
Query:  VGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ
        + GDFN+TRW HER+P  R ++GM  FNK+IE + LMEIP+ NG+YTW R G  SS+SL +RF +NKEWDDLF NSR S +
Subjt:  VGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ

XP_022154822.1 uncharacterized protein LOC111021983 [Momordica charantia]1.3e-2954.63Show/hide
Query:  IRPNNYRERRHLWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDL
        +   +YR R+ LWSELR +  + ++ WC+GGDFNV+RW  ++    R ++ MR FN II E+ L E+PLSNGK+TWSR+GNDS  SL+D+FL++KEWD+L
Subjt:  IRPNNYRERRHLWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDL

Query:  FDNSRASR
        F+NSR SR
Subjt:  FDNSRASR

XP_038904301.1 uncharacterized protein LOC120090656 [Benincasa hispida]3.6e-2454.08Show/hide
Query:  LWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ
        +W+EL SL    D+PWC+G +FN  R  HERFP  R ++ M NFNK I    L+E PLSNG++TWSR G+ +S+SL+D FLV+  W+D+FDNSR +RQ
Subjt:  LWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ

TrEMBL top hitse value%identityAlignment
A0A5D3BHE3 Uncharacterized protein1.1e-2649.53Show/hide
Query:  PNNYRERRHLWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFD
        P +Y ERR +W  L SL  YC   WC+GG  N+TRW HE FP  + ++GMR FN  I+ + + E+PL NG+ TWSR G+  SRSL+D F ++KEWD++ +
Subjt:  PNNYRERRHLWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFD

Query:  NSRASRQ
        NSR  R+
Subjt:  NSRASRQ

A0A5D3BXH7 Exodeoxyribonuclease-like5.7e-2360.49Show/hide
Query:  VGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ
        + GDFN+TRW HER+P  R ++GM  FNK+IE + LMEIP+ NG+YTW R G  SS+SL +RF +NKEWDDLF NSR S +
Subjt:  VGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ

A0A5D3CIL8 Uncharacterized protein1.2e-2058.97Show/hide
Query:  DFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ
        DFN TRW HERFP  R ++GMR FN  I++  L+E+PLSNG +TWS  G+  +RSLIDRF ++K+WDD F+NSR +RQ
Subjt:  DFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ

A0A5D3D1U8 Transposon TX1 uncharacterized6.7e-2457.65Show/hide
Query:  EPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ
        E WC GGDFN+TRW+HERFP  R ++GMR FN  +E+  L+EIPL N ++TWSR G   +R  +DRF++NK WD  F+N+RASRQ
Subjt:  EPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDLFDNSRASRQ

A0A6J1DMQ9 uncharacterized protein LOC1110219836.2e-3054.63Show/hide
Query:  IRPNNYRERRHLWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDL
        +   +YR R+ LWSELR +  + ++ WC+GGDFNV+RW  ++    R ++ MR FN II E+ L E+PLSNGK+TWSR+GNDS  SL+D+FL++KEWD+L
Subjt:  IRPNNYRERRHLWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEWDDL

Query:  FDNSRASR
        F+NSR SR
Subjt:  FDNSRASR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCCAACAGAACAAAGTTTGTTGGATTTCGAACATATACGGCCTAATAATTACAGAGAAAGAAGACATCTATGGAGTGAATTGAGATCTCTTTTTTGTTATTGTGA
TGAGCCTTGGTGTGTGGGAGGTGATTTTAATGTGACAAGGTGGATCCACGAGCGCTTTCCTTGTAGTAGATACTCTAAAGGTATGAGGAATTTTAATAAAATCATTGAAG
AGATTGGTTTGATGGAGATCCCTTTATCTAATGGCAAGTATACTTGGTCTCGGTTAGGCAATGATAGTAGTCGATCATTAATTGATAGATTTCTTGTTAATAAGGAGTGG
GATGATCTTTTTGATAACTCAAGAGCTTCAAGGCAGATTATGGAGAATTCTCTTGCTGAAGATCGATCGTGTGGATGGGCTGGTTTTATGCCTTCTGCCAAGCTTCGAAA
TTTGAAATCAGCAATCAAAGTTTGCTTTGAGTTCTCCCTTTTCAGAAGTAGAGATATGGACAGCAATGAAGTCTTTGGTGAAAAAATAGGGCTTCGAGAATGTGCTACAA
CTGCTTATTGGTCCTTCTTTTTCTTCAAGACCGAGATTACTTTGATATCAGAAATTTGGATGGAAAAAGATCAGAGAGCTTTTGAAGATGAAGCGTGGCATTCTTTAGCT
CGTCTGGAATCAGCTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCCAACAGAACAAAGTTTGTTGGATTTCGAACATATACGGCCTAATAATTACAGAGAAAGAAGACATCTATGGAGTGAATTGAGATCTCTTTTTTGTTATTGTGA
TGAGCCTTGGTGTGTGGGAGGTGATTTTAATGTGACAAGGTGGATCCACGAGCGCTTTCCTTGTAGTAGATACTCTAAAGGTATGAGGAATTTTAATAAAATCATTGAAG
AGATTGGTTTGATGGAGATCCCTTTATCTAATGGCAAGTATACTTGGTCTCGGTTAGGCAATGATAGTAGTCGATCATTAATTGATAGATTTCTTGTTAATAAGGAGTGG
GATGATCTTTTTGATAACTCAAGAGCTTCAAGGCAGATTATGGAGAATTCTCTTGCTGAAGATCGATCGTGTGGATGGGCTGGTTTTATGCCTTCTGCCAAGCTTCGAAA
TTTGAAATCAGCAATCAAAGTTTGCTTTGAGTTCTCCCTTTTCAGAAGTAGAGATATGGACAGCAATGAAGTCTTTGGTGAAAAAATAGGGCTTCGAGAATGTGCTACAA
CTGCTTATTGGTCCTTCTTTTTCTTCAAGACCGAGATTACTTTGATATCAGAAATTTGGATGGAAAAAGATCAGAGAGCTTTTGAAGATGAAGCGTGGCATTCTTTAGCT
CGTCTGGAATCAGCTTGTTAA
Protein sequenceShow/hide protein sequence
MFPTEQSLLDFEHIRPNNYRERRHLWSELRSLFCYCDEPWCVGGDFNVTRWIHERFPCSRYSKGMRNFNKIIEEIGLMEIPLSNGKYTWSRLGNDSSRSLIDRFLVNKEW
DDLFDNSRASRQIMENSLAEDRSCGWAGFMPSAKLRNLKSAIKVCFEFSLFRSRDMDSNEVFGEKIGLRECATTAYWSFFFFKTEITLISEIWMEKDQRAFEDEAWHSLA
RLESAC