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Lag0042085 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042085
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description3'-5' exonuclease domain-containing protein
Genome locationchr13:36244303..36245217
RNA-Seq ExpressionLag0042085
SyntenyLag0042085
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX99525.1 werner syndrome-like exonuclease-like protein [Trifolium pratense]1.8e-0733.05Show/hide
Query:  VHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKW-----ENEDR--ALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFVGINLNHDARAIKRR
        +HT+VT+    V  W+  + R   + N +V L ++W      N D   A+I  C   +CL++ ++RA      L  FL ++G TFVG+ +  D   + R 
Subjt:  VHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKW-----ENEDR--ALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFVGINLNHDARAIKRR

Query:  FRCFVRNKVELRRLATPR
        +   V N +ELR LAT R
Subjt:  FRCFVRNKVELRRLATPR

XP_002278250.1 PREDICTED: Werner Syndrome-like exonuclease [Vitis vinifera]3.9e-0730.73Show/hide
Query:  EIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRK---HGSQNVIVELTIKWE-------NEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV
        E+   G S   V T+VTN    V  W++ V      +G   +IV L ++W            A +  C    CLI+ L+ A A    L  FLR+ G TFV
Subjt:  EIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRK---HGSQNVIVELTIKWE-------NEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV

Query:  GINLNHDARAIKRRFRCFVRNKVELRRLATP--RNVRRSNLTFHHLG-EELGISIKKDRKIRFKDLEN--VSLKQVNYA
        G+ ++ D   +       V N V+LR LA      +   N     LG E LG  ++K R++     +N  +S  QV YA
Subjt:  GINLNHDARAIKRRFRCFVRNKVELRRLATP--RNVRRSNLTFHHLG-EELGISIKKDRKIRFKDLEN--VSLKQVNYA

XP_011079530.1 Werner Syndrome-like exonuclease [Sesamum indicum]1.0e-0727.13Show/hide
Query:  LVSEIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKW-------ENEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV
        + S  + +  S  R+ T VT++   V  WV++V   +G Q++IV L  +W       EN   A +  CA   CLI  L   +     LK FL H  VTFV
Subjt:  LVSEIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKW-------ENEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV

Query:  GINLNHDARAIKRRFRCFVRNKVELRRLATPRN----VRRSNLTFHHLGEELGISIKKDRKIRFKDLE--NVSLKQVNYAGTRFYLGF
        G+ +  DA  +++ +        +++ +A   +    +RR  L        +G+++ K   +   + E  N+SL Q+ YA    Y  +
Subjt:  GINLNHDARAIKRRFRCFVRNKVELRRLATPRN----VRRSNLTFHHLGEELGISIKKDRKIRFKDLE--NVSLKQVNYAGTRFYLGF

XP_028765124.1 Werner Syndrome-like exonuclease [Prosopis alba]1.2e-0826.01Show/hide
Query:  VHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKWENED------RALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFVGINLNHDARAIKRRF
        + T +T++      W+R+V+ K+G ++ +V L  +W   +       A++  C    CLI  L   +     L+ FL     TFVG+ + +D + +++ +
Subjt:  VHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKWENED------RALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFVGINLNHDARAIKRRF

Query:  RCFVRNKVELRRLAT---PRNVRRSNLTFHHLGEEL-GISIKKDRKIRFKD--LENVSLKQVNYAGTRFYLGF
             N V++  +A    P    RS L   HL +EL G+ +KK++K+   +  + ++S +QV YA    Y  +
Subjt:  RCFVRNKVELRRLAT---PRNVRRSNLTFHHLGEEL-GISIKKDRKIRFKD--LENVSLKQVNYAGTRFYLGF

XP_034694339.1 Werner Syndrome-like exonuclease [Vitis riparia]1.0e-0731.28Show/hide
Query:  EIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRK---HGSQNVIVELTIKWE-------NEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV
        E+   G S   V T+VTN    V  W++ V      +G   +IV L ++W            A +  C    CLI+ L+ A A    L  FLR+ G TFV
Subjt:  EIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRK---HGSQNVIVELTIKWE-------NEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV

Query:  GINLNHDARAIKRRFRCFVRNKVELRRLATP--RNVRRSNLTFHHLG-EELGISIKKDRKIRFKDLEN--VSLKQVNYA
        G+ +N D   +       V N V+LR LA      +   N     LG E LG  ++K R++     +N  +S  QV YA
Subjt:  GINLNHDARAIKRRFRCFVRNKVELRRLATP--RNVRRSNLTFHHLG-EELGISIKKDRKIRFKDLEN--VSLKQVNYA

TrEMBL top hitse value%identityAlignment
A0A2K3N902 Werner syndrome-like exonuclease-like protein8.6e-0833.05Show/hide
Query:  VHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKW-----ENEDR--ALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFVGINLNHDARAIKRR
        +HT+VT+    V  W+  + R   + N +V L ++W      N D   A+I  C   +CL++ ++RA      L  FL ++G TFVG+ +  D   + R 
Subjt:  VHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKW-----ENEDR--ALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFVGINLNHDARAIKRR

Query:  FRCFVRNKVELRRLATPR
        +   V N +ELR LAT R
Subjt:  FRCFVRNKVELRRLATPR

A0A438BXV7 Werner Syndrome-like exonuclease4.3e-0730.17Show/hide
Query:  EIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRK---HGSQNVIVELTIKWE-------NEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV
        E+   G S   V T+VTN    V  W++ V      +G   +IV L ++W            A +  C    CLI+ L+ A A    L  FLR+ G TFV
Subjt:  EIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRK---HGSQNVIVELTIKWE-------NEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV

Query:  GINLNHDARAIKRRFRCFVRNKVELRRLATP--RNVRRSNLTFHHLG-EELGISIKKDRKIRFKDLEN--VSLKQVNYA
        G+ ++ D   +       V N ++LR LA      +   N     LG E LG  ++K R++     +N  +S  QV YA
Subjt:  GINLNHDARAIKRRFRCFVRNKVELRRLATP--RNVRRSNLTFHHLG-EELGISIKKDRKIRFKDLEN--VSLKQVNYA

A0A438J7T1 Werner Syndrome-like exonuclease1.9e-0730.73Show/hide
Query:  EIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRK---HGSQNVIVELTIKWE-------NEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV
        E+   G S   V T+VTN    V  W++ V      +G   +IV L ++W            A +  C    CLI+ L+ A A    L  FLR+ G TFV
Subjt:  EIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRK---HGSQNVIVELTIKWE-------NEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV

Query:  GINLNHDARAIKRRFRCFVRNKVELRRLATP--RNVRRSNLTFHHLG-EELGISIKKDRKIRFKDLEN--VSLKQVNYA
        G+ ++ D   +       V N V+LR LA      +   N     LG E LG  ++K R++     +N  +S  QV YA
Subjt:  GINLNHDARAIKRRFRCFVRNKVELRRLATP--RNVRRSNLTFHHLG-EELGISIKKDRKIRFKDLEN--VSLKQVNYA

A0A6I9T655 Werner Syndrome-like exonuclease5.0e-0827.13Show/hide
Query:  LVSEIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKW-------ENEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV
        + S  + +  S  R+ T VT++   V  WV++V   +G Q++IV L  +W       EN   A +  CA   CLI  L   +     LK FL H  VTFV
Subjt:  LVSEIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKW-------ENEDRALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFV

Query:  GINLNHDARAIKRRFRCFVRNKVELRRLATPRN----VRRSNLTFHHLGEELGISIKKDRKIRFKDLE--NVSLKQVNYAGTRFYLGF
        G+ +  DA  +++ +        +++ +A   +    +RR  L        +G+++ K   +   + E  N+SL Q+ YA    Y  +
Subjt:  GINLNHDARAIKRRFRCFVRNKVELRRLATPRN----VRRSNLTFHHLGEELGISIKKDRKIRFKDLE--NVSLKQVNYAGTRFYLGF

A0A6J1D121 Werner Syndrome-like exonuclease1.9e-0729.55Show/hide
Query:  RVHTVVTNRNPEVRRWVRKVFRKHGSQ--NVIVELTIKWE---NEDR----ALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFVGINLNHDARAI
        ++ T +T+    V  W+ ++ R H  +   ++V L ++W    N  R    A +  C    CLI+ L+ A      L +FL  +  TFVG+ ++ DAR +
Subjt:  RVHTVVTNRNPEVRRWVRKVFRKHGSQ--NVIVELTIKWE---NEDR----ALISHCAREDCLIYVLVRAEASSPRLKYFLRHKGVTFVGINLNHDARAI

Query:  KRRFRCFVRNKVELRRLATPRNVRRS--NLTFHHLGEE-LGISIKKDRKIRFK--DLENVSLKQVNYAGTRFYLGF
           +   V N V+LR +A  R  RR   N     L  E LG  I K + +     D E ++  QV YA    +L F
Subjt:  KRRFRCFVRNKVELRRLATPRNVRRS--NLTFHHLGEE-LGISIKKDRKIRFK--DLENVSLKQVNYAGTRFYLGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATCAAGCTGTTGTTGTGCCTTTACTTACTTGATAAACGGGGGTAGAGGTTGCGATATTCGCCCGTTGTGCCACCGGCGATCCGTTTTCAAGTTGGCTGACTTACT
TGTGAGCGAAATCTTCACTCTTGGAAGCAGTTTAAGACGAGTACATACCGTAGTAACAAACAGGAATCCAGAAGTTAGACGTTGGGTTAGGAAGGTCTTTAGAAAACATG
GCAGCCAAAATGTGATCGTCGAACTCACCATCAAATGGGAGAATGAGGATCGGGCACTGATCTCACACTGCGCGAGAGAGGATTGTTTGATTTACGTTTTGGTTAGAGCA
GAAGCATCGTCACCTCGGCTCAAATACTTCCTAAGGCATAAGGGAGTCACGTTCGTTGGGATAAATCTCAACCATGACGCCCGGGCTATCAAACGGAGATTTCGTTGCTT
CGTGAGGAACAAGGTTGAATTAAGACGTCTAGCGACACCTAGAAACGTTAGGCGAAGCAATCTGACATTTCACCATCTTGGTGAAGAACTCGGAATTTCAATCAAGAAGG
ATAGGAAGATCCGGTTCAAGGACTTGGAGAACGTTAGCCTCAAACAGGTGAATTATGCAGGTACACGCTTTTATCTTGGCTTCCATTGGGAAGCGCAAGCTTGGATGATC
GGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTATCAAGCTGTTGTTGTGCCTTTACTTACTTGATAAACGGGGGTAGAGGTTGCGATATTCGCCCGTTGTGCCACCGGCGATCCGTTTTCAAGTTGGCTGACTTACT
TGTGAGCGAAATCTTCACTCTTGGAAGCAGTTTAAGACGAGTACATACCGTAGTAACAAACAGGAATCCAGAAGTTAGACGTTGGGTTAGGAAGGTCTTTAGAAAACATG
GCAGCCAAAATGTGATCGTCGAACTCACCATCAAATGGGAGAATGAGGATCGGGCACTGATCTCACACTGCGCGAGAGAGGATTGTTTGATTTACGTTTTGGTTAGAGCA
GAAGCATCGTCACCTCGGCTCAAATACTTCCTAAGGCATAAGGGAGTCACGTTCGTTGGGATAAATCTCAACCATGACGCCCGGGCTATCAAACGGAGATTTCGTTGCTT
CGTGAGGAACAAGGTTGAATTAAGACGTCTAGCGACACCTAGAAACGTTAGGCGAAGCAATCTGACATTTCACCATCTTGGTGAAGAACTCGGAATTTCAATCAAGAAGG
ATAGGAAGATCCGGTTCAAGGACTTGGAGAACGTTAGCCTCAAACAGGTGAATTATGCAGGTACACGCTTTTATCTTGGCTTCCATTGGGAAGCGCAAGCTTGGATGATC
GGATGA
Protein sequenceShow/hide protein sequence
MLSSCCCAFTYLINGGRGCDIRPLCHRRSVFKLADLLVSEIFTLGSSLRRVHTVVTNRNPEVRRWVRKVFRKHGSQNVIVELTIKWENEDRALISHCAREDCLIYVLVRA
EASSPRLKYFLRHKGVTFVGINLNHDARAIKRRFRCFVRNKVELRRLATPRNVRRSNLTFHHLGEELGISIKKDRKIRFKDLENVSLKQVNYAGTRFYLGFHWEAQAWMI
G