; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0042099 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042099
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr13:36458164..36458856
RNA-Seq ExpressionLag0042099
SyntenyLag0042099
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-3748.43Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P   + + F QP+Q + L + F ++F   H KE       +   +          EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+S+T  EEENQC  ST  R  AF+ LS+STSKK +PSTS FDRLK+ ++Q +R+M +L+VK F E N+D K+ S +PS MK K SV I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKS
        P  I+ TNPINEG ++  D++KS
Subjt:  PNLIVLTNPINEGFDQDHDKDKS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-3748.43Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P   + +   QP+Q + L + F ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+SM   EEENQC  ST  R  AF+RLS+STSKK +PSTS FDRLK+T++Q +R+M +L+ K F E N+D K+ S +PS MK K SV I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKS
        P  I+ TNPINEG ++  D++KS
Subjt:  PNLIVLTNPINEGFDQDHDKDKS

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-3746.88Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNFHKKEKKNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P  ++ +KF QP++ + L + F ++F +   +  +      T+  ++V       EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNFHKKEKKNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+SM   EEENQC +ST  R  AF+RLS+S SKK +PSTS FDRLK+T++Q +R+M +L+ K F E N+D K+ S +PS +K K S+ I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKSF
        P  I+ TNPINEG ++  D++K F
Subjt:  PNLIVLTNPINEGFDQDHDKDKSF

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.5e-3747.09Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P   + + F QP++ + L +  S++F   H +E       +   +          EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+SM   EE+NQC  ST  R  AF+RLS+STSKK +PSTS FDRLK+T++Q +R+M +L+ K F E N+D K+ + +PS MK K SV I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKS
        P  I+ TNPINEG ++  D++KS
Subjt:  PNLIVLTNPINEGFDQDHDKDKS

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.5e-3747.09Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P   + + F QP++ + L +  S++F   H +E       +   +          EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+SM   EE+NQC  ST  R  AF+RLS+STSKK +PSTS FDRLK+T++Q +R+M +L+ K F E N+D K+ + +PS MK K SV I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKS
        P  I+ TNPINEG ++  D++KS
Subjt:  PNLIVLTNPINEGFDQDHDKDKS

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein8.3e-3848.43Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P   + + F QP+Q + L + F ++F   H KE       +   +          EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+S+T  EEENQC  ST  R  AF+ LS+STSKK +PSTS FDRLK+ ++Q +R+M +L+VK F E N+D K+ S +PS MK K SV I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKS
        P  I+ TNPINEG ++  D++KS
Subjt:  PNLIVLTNPINEGFDQDHDKDKS

A0A5A7TQ06 Retrotransposon gag protein1.1e-3748.43Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P   + +   QP+Q + L + F ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+SM   EEENQC  ST  R  AF+RLS+STSKK +PSTS FDRLK+T++Q +R+M +L+ K F E N+D K+ S +PS MK K SV I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKS
        P  I+ TNPINEG ++  D++KS
Subjt:  PNLIVLTNPINEGFDQDHDKDKS

A0A5A7U974 Retrotransposon gag protein1.1e-3746.88Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNFHKKEKKNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P  ++ +KF QP++ + L + F ++F +   +  +      T+  ++V       EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNFHKKEKKNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+SM   EEENQC +ST  R  AF+RLS+S SKK +PSTS FDRLK+T++Q +R+M +L+ K F E N+D K+ S +PS +K K S+ I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKSF
        P  I+ TNPINEG ++  D++K F
Subjt:  PNLIVLTNPINEGFDQDHDKDKSF

A0A5A7UI09 Retrotransposon gag protein4.1e-3747.09Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P   + + F QP++ + L +  S++F   H +E       +   +          EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+SM   EE+NQC  ST  R  AF+RLS+STSKK +PSTS FDRLK+T++Q +R+M +L+ K F E N+D K+ + +PS MK K SV I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKS
        P  I+ TNPINEG ++  D++KS
Subjt:  PNLIVLTNPINEGFDQDHDKDKS

A0A5D3CCI8 Retrotransposon gag protein4.1e-3747.09Show/hide
Query:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV
        I  K K +R K   K +P   + + F QP++ + L +  S++F   H +E       +   +          EEVDNS + +QRTSVFDRIK  TT  SV
Subjt:  IKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNF---HKKEKKNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKSPTTHPSV

Query:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK
        FQR+SM   EE+NQC  ST  R  AF+RLS+STSKK +PSTS FDRLK+T++Q +R+M +L+ K F E N+D K+ + +PS MK K SV I TEGSL VK
Subjt:  FQRMSMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVK

Query:  PNLIVLTNPINEGFDQDHDKDKS
        P  I+ TNPINEG ++  D++KS
Subjt:  PNLIVLTNPINEGFDQDHDKDKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAAAAATTGAGCTCGACCTTAATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAAAAACTTCAACC
CAAGAGTAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGTGACTTCCT
ACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGTCTCCAACTACTCATCCTTCAGTATTCCAAAGAATG
AGTATGACCGCAATAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGTTCGACCTTTAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGAC
ATCTGTTTTTGATCGCCTCAAAGTAACAAGCGAACAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCAAAGTA
TCATCCCATCATGTATGAAGATGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTGTCTTGACTAATCCTATAAATGAAGGATTT
GATCAAGACCATGATAAAGATAAGAGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAAAAATTGAGCTCGACCTTAATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAAAAACTTCAACC
CAAGAGTAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGTGACTTCCT
ACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGTCTCCAACTACTCATCCTTCAGTATTCCAAAGAATG
AGTATGACCGCAATAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGTTCGACCTTTAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGAC
ATCTGTTTTTGATCGCCTCAAAGTAACAAGCGAACAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCAAAGTA
TCATCCCATCATGTATGAAGATGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTGTCTTGACTAATCCTATAAATGAAGGATTT
GATCAAGACCATGATAAAGATAAGAGCTTTTAA
Protein sequenceShow/hide protein sequence
MEGKIELDLNEVAQSNLATIKEKSKHQRKKDPKKLQPKSKRSKKFSQPQQLVMLNKSFSKNFHKKEKKNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKSPTTHPSVFQRM
SMTAIEEENQCSVSTSVRPLAFQRLSVSTSKKSQPSTSVFDRLKVTSEQPKRKMDNLEVKLFDEVNNDKKLQSIIPSCMKMKFSVLITTEGSLKVKPNLIVLTNPINEGF
DQDHDKDKSF