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Lag0042102 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042102
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr13:36485763..36486116
RNA-Seq ExpressionLag0042102
SyntenyLag0042102
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0532.76Show/hide
Query:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL
        +NS A+W E+   GG+SW++ DS GS I +  +++ RK  +K +E  A+ EGL     L +E        ++ +E+  IL     DL E  N++D I  L
Subjt:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL

Query:  AMKWVKLSFSIALEIK
         +    +SF     IK
Subjt:  AMKWVKLSFSIALEIK

VDD35472.1 unnamed protein product, partial [Brassica oleracea]6.3e-0430.3Show/hide
Query:  NSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL
        N+DAAW +++++GG  WI+RD  G LI  G +K+         EA A+W  L  +   F  +R  + +E  +++++ ++ G++E     + II  I  L
Subjt:  NSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]3.9e-0637.78Show/hide
Query:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSET
        +N+DA+W E+ + GGI WI+ D  G ++  G  KI  K +I ++E   I  GL  IN    + R PI +E  ++E+I ++  KKED+  T
Subjt:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSET

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.2e-0834.55Show/hide
Query:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL
        +N+DA+W +    GGI WI+R   G ++  G R +E    +K +EASAI EGL N+  L      P+ +E  + E+  +L  K+EDL++T  +++ I+ L
Subjt:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL

Query:  AMKWVKLSFS
              L+F+
Subjt:  AMKWVKLSFS

TrEMBL top hitse value%identityAlignment
A0A3P6ESY2 RNase H domain-containing protein (Fragment)3.0e-0430.3Show/hide
Query:  NSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL
        N+DAAW +++++GG  WI+RD  G LI  G +K+         EA A+W  L  +   F  +R  + +E  +++++ ++ G++E     + II  I  L
Subjt:  NSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL

A0A6J1CP26 uncharacterized protein LOC1110134128.9e-0434.02Show/hide
Query:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAI
        +N++AAW      GGI WI+RD  G +I    R I  +  I  +E  AI EGL  I    +E   PI +E  ++E I +L  + +D +E   +++ I
Subjt:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAI

A0A6J1CQG0 uncharacterized protein LOC1110132161.9e-0637.78Show/hide
Query:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSET
        +N+DA+W E+ + GGI WI+ D  G ++  G  KI  K +I ++E   I  GL  IN    + R PI +E  ++E+I ++  KKED+  T
Subjt:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSET

A0A6J1DNV9 uncharacterized protein LOC1110224032.0e-0834.55Show/hide
Query:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL
        +N+DA+W +    GGI WI+R   G ++  G R +E    +K +EASAI EGL N+  L      P+ +E  + E+  +L  K+EDL++T  +++ I+ L
Subjt:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPL

Query:  AMKWVKLSFS
              L+F+
Subjt:  AMKWVKLSFS

A0A6J1DSV1 uncharacterized protein LOC1110236085.2e-0433.33Show/hide
Query:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINR-----LFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIID
        +N+DAAW      GGI WI+RD  G +I    R I  +  I  +E  AI EGL  I +     + +E   PI +E  ++E I +L  + +D +E   +++
Subjt:  MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINR-----LFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIID

Query:  AI
         I
Subjt:  AI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCTGACGCCGCTTGGTTCGAGAAAGACAAAGCGGGAGGAATCAGCTGGATTGTTCGTGATTCTGGCGGATCCTTGATTGCTGTTGGCCTGAGAAAAATTGAGAG
GAAGCCGAAAATTAAATCTATGGAGGCCTCTGCTATTTGGGAAGGACTCTCAAACATCAATCGACTTTTCAAGGAGGAGCGACCTCCTATAGTCGTTGAATTAGTTGCCA
TGGAGATCATCGACATATTGTTAGGGAAGAAGGAGGACTTATCTGAGACAAAAAACATCATCGACGCCATTGTTCCCTTAGCCATGAAATGGGTAAAATTGAGTTTCAGT
ATTGCCCTAGAAATCAAAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTCTGACGCCGCTTGGTTCGAGAAAGACAAAGCGGGAGGAATCAGCTGGATTGTTCGTGATTCTGGCGGATCCTTGATTGCTGTTGGCCTGAGAAAAATTGAGAG
GAAGCCGAAAATTAAATCTATGGAGGCCTCTGCTATTTGGGAAGGACTCTCAAACATCAATCGACTTTTCAAGGAGGAGCGACCTCCTATAGTCGTTGAATTAGTTGCCA
TGGAGATCATCGACATATTGTTAGGGAAGAAGGAGGACTTATCTGAGACAAAAAACATCATCGACGCCATTGTTCCCTTAGCCATGAAATGGGTAAAATTGAGTTTCAGT
ATTGCCCTAGAAATCAAAACATAG
Protein sequenceShow/hide protein sequence
MNSDAAWFEKDKAGGISWIVRDSGGSLIAVGLRKIERKPKIKSMEASAIWEGLSNINRLFKEERPPIVVELVAMEIIDILLGKKEDLSETKNIIDAIVPLAMKWVKLSFS
IALEIKT