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Lag0042117 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042117
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr13:36804293..36804712
RNA-Seq ExpressionLag0042117
SyntenyLag0042117
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CCA66050.1 hypothetical protein [Beta vulgaris subsp. vulgaris]2.8e-2745.93Show/hide
Query:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA
        GD N  +FH KAS R++RN IHG+ D    W  E E+++ V E+YF +IF S  PS  D   VL H+ R VT E N IL+ P++++E+   +   HP KA
Subjt:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA

Query:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNES
        PGPDG  AIFYQ++W I+G    +   +IL HN S
Subjt:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNES

XP_010693383.1 PREDICTED: uncharacterized protein LOC104906342 [Beta vulgaris subsp. vulgaris]7.4e-2843.28Show/hide
Query:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA
        GD N ++FH KAS RR RN + G+ DS+ +WH + +K+QE+ E+Y+ D+F S  P+   +  VL H+ R ++PE+N++L  P+T+ E+   ++  HP+KA
Subjt:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA

Query:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNE
        PGPDG  AIF+QK+W IVG       + IL+  E
Subjt:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNE

XP_012844095.1 PREDICTED: uncharacterized protein LOC105964130 [Erythranthe guttata]5.3e-2641.79Show/hide
Query:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA
        GD N ++FH KAS RR+ N+I G++D   +W  + + ++ +  +YF DIF S NPS ++LN VL+ +  +V PE+N  L   +T +E+   ++  HP K+
Subjt:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA

Query:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNE
        P PDGFP IFYQ++W I+G       L +LNH E
Subjt:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNE

XP_023881891.1 uncharacterized protein LOC111994244 [Quercus suber]1.1e-2648.18Show/hide
Query:  MGDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTK
        +GD N ++FH KAS RRRRN+I+G+ D    W    E + +V   YF  I+ S  P+   ++ VLD IP  VT EMN  L+  FTR+E+E  +   HPTK
Subjt:  MGDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTK

Query:  APGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNESV
        APGPDG  AIF+QKYW+IVG   V   L +LN N S+
Subjt:  APGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNESV

XP_024044510.1 uncharacterized protein LOC112100177 [Citrus clementina]1.8e-2647.33Show/hide
Query:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA
        GD N ++FH KAS RR++N I G+ED   +W  +AE V+ +F  YFT+IF + +PS   LNA L+ +P KV+ EMN  L   FT++E+   +    PTKA
Subjt:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA

Query:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILN
        PG DG PA F+QK+W  V    V  CL ILN
Subjt:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILN

TrEMBL top hitse value%identityAlignment
A0A2N9GPZ7 Reverse transcriptase domain-containing protein1.2e-2648.09Show/hide
Query:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA
        GD N ++FH + + RRR N I G+ D   +W  E  K+ E+   YF  IF S NPS E +  VL  +   VT  MN  L A FT+DEV   +K  +PTKA
Subjt:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA

Query:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILN
        PGPDG  AIFYQ YWDIVGP      L+IL+
Subjt:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILN

A0A2N9IPS8 Reverse transcriptase domain-containing protein1.2e-2648.09Show/hide
Query:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA
        GD N ++FH + + RRR N I G+ D   +W  E  K+ E+   YF  IF S NPS E +  VL  +   VT  MN  L A FT+DEV   +K  +PTKA
Subjt:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA

Query:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILN
        PGPDG  AIFYQ YWDIVGP      L+IL+
Subjt:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILN

A0A803PI64 Uncharacterized protein2.6e-2643.07Show/hide
Query:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA
        GD N ++FH KAS RR++N+I G+ D   +WH EA  VQ + E YF +IF S +   +    V++ IP KVT +MN++L+  FT +E+   VK  +PTKA
Subjt:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA

Query:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNESVK
        PG DG PA+FY K+W  +    +  CL +LNH  +++
Subjt:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNESVK

A0A803PYI0 Uncharacterized protein1.2e-2642.75Show/hide
Query:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA
        GD N ++FH KAS RR++N+I G+ D   +WH EA  VQ + E YF +IFRS +   +    V++ IP KVT +MN++L+  FT  E+   VK  +PTKA
Subjt:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA

Query:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNESVKA
        PG +G PA+FYQK+W  +    +  CL +LN   ++++
Subjt:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNESVKA

F4NCJ4 Reverse transcriptase domain-containing protein1.4e-2745.93Show/hide
Query:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA
        GD N  +FH KAS R++RN IHG+ D    W  E E+++ V E+YF +IF S  PS  D   VL H+ R VT E N IL+ P++++E+   +   HP KA
Subjt:  GDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKA

Query:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNES
        PGPDG  AIFYQ++W I+G    +   +IL HN S
Subjt:  PGPDGFPAIFYQKYWDIVGPTTVDECLAILNHNES

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein1.5e-0728.7Show/hide
Query:  RRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLD--HIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKAPGPDGFPAIFYQ
        +R +N I  +++ +     +  ++Q    +Y+  ++ +K  +LE+++  LD   +PR +  E  + L  P T  E+  ++ S    K+PGPDGF A FYQ
Subjt:  RRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLD--HIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKAPGPDGFPAIFYQ

Query:  KYWDIVGP
        +Y + + P
Subjt:  KYWDIVGP

P11369 LINE-1 retrotransposable element ORF2 protein4.9e-0631.76Show/hide
Query:  EAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQ----ILMAPFTRDEVENVVKSFHPTKAPGPDGFPAIFYQKY
        + E++Q     ++  ++ +K  +L++++  LD   R   P++NQ     L +P +  E+E V+ S    K+PGPDGF A FYQ +
Subjt:  EAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQ----ILMAPFTRDEVENVVKSFHPTKAPGPDGFPAIFYQKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGACTGTAATATGAGATGGTTTCATGATAAGGCATCAATGCGTCGCAGACGAAATTCTATTCATGGAGTGGAGGACTCACAAAGGCTTTGGCACATGGAGGCGGA
AAAGGTACAAGAGGTCTTTGAACAATATTTTACTGACATCTTCCGATCGAAGAATCCTTCATTAGAAGACCTGAATGCAGTTTTGGATCATATTCCAAGGAAAGTTACCC
CTGAGATGAACCAGATTTTGATGGCCCCTTTCACACGTGATGAGGTGGAAAATGTAGTCAAGAGTTTTCATCCGACCAAGGCTCCTGGTCCAGATGGTTTTCCAGCCATA
TTCTACCAGAAATATTGGGATATAGTGGGACCAACAACGGTAGACGAATGCCTGGCTATTTTAAACCATAATGAATCTGTTAAAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGACTGTAATATGAGATGGTTTCATGATAAGGCATCAATGCGTCGCAGACGAAATTCTATTCATGGAGTGGAGGACTCACAAAGGCTTTGGCACATGGAGGCGGA
AAAGGTACAAGAGGTCTTTGAACAATATTTTACTGACATCTTCCGATCGAAGAATCCTTCATTAGAAGACCTGAATGCAGTTTTGGATCATATTCCAAGGAAAGTTACCC
CTGAGATGAACCAGATTTTGATGGCCCCTTTCACACGTGATGAGGTGGAAAATGTAGTCAAGAGTTTTCATCCGACCAAGGCTCCTGGTCCAGATGGTTTTCCAGCCATA
TTCTACCAGAAATATTGGGATATAGTGGGACCAACAACGGTAGACGAATGCCTGGCTATTTTAAACCATAATGAATCTGTTAAAGCCTAG
Protein sequenceShow/hide protein sequence
MGDCNMRWFHDKASMRRRRNSIHGVEDSQRLWHMEAEKVQEVFEQYFTDIFRSKNPSLEDLNAVLDHIPRKVTPEMNQILMAPFTRDEVENVVKSFHPTKAPGPDGFPAI
FYQKYWDIVGPTTVDECLAILNHNESVKA