; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0042140 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042140
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr13:37118466..37119479
RNA-Seq ExpressionLag0042140
SyntenyLag0042140
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042309.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-6552.75Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------
        YGIERLKKL ATVFEG TD  D + WLNM EKCFDVM+C EERKV LATFLLQ            RR D                               
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------

Query:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
            GSLS+AEYERKYTELSRYADVI+ SESDRC                           V+TALRVEQSITEEKSAVE S G STASGFRGREQRRFT
Subjt:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR
        PG+N+S RQDFK RSGG                                    +CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGAR
Subjt:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR

Query:  QKGVVGRPR
        QKGVVGRPR
Subjt:  QKGVVGRPR

KAA0043142.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]6.1e-7160.29Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------
        YGIERLKKL ATVFEGSTD AD + WLNMLEKCFDVM+C EERKV LATFLLQ            RR D                               
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------

Query:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
            GSLS+AEYERKYTELSRYADVI+ SESDRC                           V+TALRVEQSITEEKSAVE S G STASGFRGREQRRFT
Subjt:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGG--SVECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGARQKGVVGRPR
        PG+N+S RQDFK RSGG  S  CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGARQKGVVGRPR
Subjt:  PGVNVSGRQDFKRRSGG--SVECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGARQKGVVGRPR

KAA0044257.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]2.6e-6958.48Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ----------------------------------------------M
        Y IERLKKL ATVFEGSTD AD + WLNMLEKCFDVM+C EERKV LATFLLQ                                              M
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ----------------------------------------------M

Query:  RRRDGSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
          + GSLS+AEYERKYTELSRYADVIV SES+RC+                          V+TALRVEQSIT+EKSAVE S G STASGFRGREQRRFT
Subjt:  RRRDGSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGG--SVECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGARQKGVVGRPR
        PG+N+S RQDFK RSGG  S  CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGARQKG+VGRPR
Subjt:  PGVNVSGRQDFKRRSGG--SVECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGARQKGVVGRPR

KAA0060066.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.5e-6553.07Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------
        YGIERLKKL ATVFEGSTD AD + WLNMLEKCFDVM+C EERKV LATFLLQ            RR D                               
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------

Query:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
            GSLS+AEYERKYTELSRYADVIV SESDRC                           V+TALRVEQSITEEKSAVE S G S ASGFRGREQRRFT
Subjt:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR
        P +N+S RQDFK RSGG                                    +CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGAR
Subjt:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR

Query:  QKGVVGRPR
        QK VVGRPR
Subjt:  QKGVVGRPR

KAA0061627.1 putative polyprotein [Cucumis melo var. makuwa]5.9e-6653.4Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------
        YGIERLKKL ATVFEGSTD AD + WLNMLEKCFDV++C EERKV LATFLLQ            RR D                               
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------

Query:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
            GSLS+AEYERKYTELSRYADVIV SESDRC                           V+T+LRV+QSITEEKSAVE S G STASGFRGREQRRFT
Subjt:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR
        PGVN+S RQDFK RSGG V                                  +CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGAR
Subjt:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR

Query:  QKGVVGRPR
        QKGVVGR R
Subjt:  QKGVVGRPR

TrEMBL top hitse value%identityAlignment
A0A5A7TIK0 Gag protease polyprotein-like protein3.0e-7160.29Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------
        YGIERLKKL ATVFEGSTD AD + WLNMLEKCFDVM+C EERKV LATFLLQ            RR D                               
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------

Query:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
            GSLS+AEYERKYTELSRYADVI+ SESDRC                           V+TALRVEQSITEEKSAVE S G STASGFRGREQRRFT
Subjt:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGG--SVECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGARQKGVVGRPR
        PG+N+S RQDFK RSGG  S  CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGARQKGVVGRPR
Subjt:  PGVNVSGRQDFKRRSGG--SVECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGARQKGVVGRPR

A0A5A7TLU6 Reverse transcriptase1.1e-6552.75Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------
        YGIERLKKL ATVFEG TD  D + WLNM EKCFDVM+C EERKV LATFLLQ            RR D                               
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------

Query:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
            GSLS+AEYERKYTELSRYADVI+ SESDRC                           V+TALRVEQSITEEKSAVE S G STASGFRGREQRRFT
Subjt:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR
        PG+N+S RQDFK RSGG                                    +CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGAR
Subjt:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR

Query:  QKGVVGRPR
        QKGVVGRPR
Subjt:  QKGVVGRPR

A0A5A7TQW1 Gag protease polyprotein-like protein1.2e-6958.48Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ----------------------------------------------M
        Y IERLKKL ATVFEGSTD AD + WLNMLEKCFDVM+C EERKV LATFLLQ                                              M
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ----------------------------------------------M

Query:  RRRDGSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
          + GSLS+AEYERKYTELSRYADVIV SES+RC+                          V+TALRVEQSIT+EKSAVE S G STASGFRGREQRRFT
Subjt:  RRRDGSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGG--SVECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGARQKGVVGRPR
        PG+N+S RQDFK RSGG  S  CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGARQKG+VGRPR
Subjt:  PGVNVSGRQDFKRRSGG--SVECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGARQKGVVGRPR

A0A5A7V0R0 Reverse transcriptase3.2e-6553.07Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------
        YGIERLKKL ATVFEGSTD AD + WLNMLEKCFDVM+C EERKV LATFLLQ            RR D                               
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------

Query:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
            GSLS+AEYERKYTELSRYADVIV SESDRC                           V+TALRVEQSITEEKSAVE S G S ASGFRGREQRRFT
Subjt:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR
        P +N+S RQDFK RSGG                                    +CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGAR
Subjt:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR

Query:  QKGVVGRPR
        QK VVGRPR
Subjt:  QKGVVGRPR

A0A5A7V411 Putative polyprotein2.9e-6653.4Show/hide
Query:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------
        YGIERLKKL ATVFEGSTD AD + WLNMLEKCFDV++C EERKV LATFLLQ            RR D                               
Subjt:  YGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQ-----------MRRRD-------------------------------

Query:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT
            GSLS+AEYERKYTELSRYADVIV SESDRC                           V+T+LRV+QSITEEKSAVE S G STASGFRGREQRRFT
Subjt:  ----GSLSLAEYERKYTELSRYADVIVTSESDRCE--------------------------VKTALRVEQSITEEKSAVEPSHGASTASGFRGREQRRFT

Query:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR
        PGVN+S RQDFK RSGG V                                  +CGQPGHFK+DCPQL   VQRDQGV S  VEQ RVS    EGTSGAR
Subjt:  PGVNVSGRQDFKRRSGGSV----------------------------------ECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGAR

Query:  QKGVVGRPR
        QKGVVGR R
Subjt:  QKGVVGRPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGGGATAGAACGACTGAAGAAGTTAAGAGCCACAGTGTTTGAGGGTTCCACAGATTCAGCTGACACCAAGGTCTGGTTAAATATGCTGGAGAAATGCTTCGACGT
GATGAGTTGTCATGAGGAGCGAAAAGTCATATTAGCTACATTCCTTCTGCAAATGAGGCGGAGGGATGGGTCACTTTCACTGGCCGAGTACGAGAGAAAGTATACCGAGC
TTTCACGGTATGCCGATGTGATTGTGACATCTGAGAGTGACAGGTGTGAAGTAAAGACTGCCTTACGTGTGGAGCAGAGTATAACAGAGGAAAAGTCGGCAGTGGAGCCT
AGTCATGGGGCTTCAACAGCTAGTGGTTTCCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGTCGTCAAGACTTTAAGCGTCGGTCTGGTGGCAG
TGTCGAGTGTGGACAACCAGGGCATTTCAAGAGGGATTGTCCACAGCTAAGAGCAGCAGTTCAGAGGGACCAGGGAGTTGAGTCCCACATAGTTGAGCAACCGAGAGTCT
CAGCAGCCGCAAGAGAGGGCACCAGTGGTGCAAGGCAGAAGGGAGTTGTGGGGAGACCTAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATGGGATAGAACGACTGAAGAAGTTAAGAGCCACAGTGTTTGAGGGTTCCACAGATTCAGCTGACACCAAGGTCTGGTTAAATATGCTGGAGAAATGCTTCGACGT
GATGAGTTGTCATGAGGAGCGAAAAGTCATATTAGCTACATTCCTTCTGCAAATGAGGCGGAGGGATGGGTCACTTTCACTGGCCGAGTACGAGAGAAAGTATACCGAGC
TTTCACGGTATGCCGATGTGATTGTGACATCTGAGAGTGACAGGTGTGAAGTAAAGACTGCCTTACGTGTGGAGCAGAGTATAACAGAGGAAAAGTCGGCAGTGGAGCCT
AGTCATGGGGCTTCAACAGCTAGTGGTTTCCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGTCGTCAAGACTTTAAGCGTCGGTCTGGTGGCAG
TGTCGAGTGTGGACAACCAGGGCATTTCAAGAGGGATTGTCCACAGCTAAGAGCAGCAGTTCAGAGGGACCAGGGAGTTGAGTCCCACATAGTTGAGCAACCGAGAGTCT
CAGCAGCCGCAAGAGAGGGCACCAGTGGTGCAAGGCAGAAGGGAGTTGTGGGGAGACCTAGGTAG
Protein sequenceShow/hide protein sequence
MYGIERLKKLRATVFEGSTDSADTKVWLNMLEKCFDVMSCHEERKVILATFLLQMRRRDGSLSLAEYERKYTELSRYADVIVTSESDRCEVKTALRVEQSITEEKSAVEP
SHGASTASGFRGREQRRFTPGVNVSGRQDFKRRSGGSVECGQPGHFKRDCPQLRAAVQRDQGVESHIVEQPRVSAAAREGTSGARQKGVVGRPR