; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0042143 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042143
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr13:37251244..37254063
RNA-Seq ExpressionLag0042143
SyntenyLag0042143
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149797.1 uncharacterized protein LOC111018144 [Momordica charantia]2.4e-3872.81Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        +LERI  VAYRLALPP++SAVHNVFHV MLRKYVHDP+HVL  EPL ++E L Y+E PI ++ARE +VLRNR IDLVKVLW+N ++EEATWERE E+RA+
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPELFEQ+TFEDE+
Subjt:  YPELFEQKTFEDES

XP_022153199.1 uncharacterized protein LOC111020755 [Momordica charantia]8.2e-3971.05Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        +LERI  VAYRLALPP+++AVHNVFHV+MLRKY+HDP+HVL PEPL L+E L YEE P++VLARE ++LRNRTI LVKVLW+N ++EEATWERE +++  
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPELFEQ TF DES
Subjt:  YPELFEQKTFEDES

XP_022155143.1 uncharacterized protein LOC111022284 [Momordica charantia]2.2e-3670.18Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        + ERI  VAY LALPP+++AVHNVFHV MLRKYVHDP+HVL  EPL ++E L Y+E PI ++ARE +VLRNR IDLVKVLW+N ++EEATWERE E+RA 
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPELFE++TFEDES
Subjt:  YPELFEQKTFEDES

XP_022157418.1 uncharacterized protein LOC111024119 [Momordica charantia]3.8e-3666.67Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        +LERI+ VAYRLALPP+++AVHNVFHV MLR+Y+HDP+HVL PEPL L+E L YE  P+++LA E ++LRNRTI LV VLW+N +++EATWERE +++A 
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPEL EQ TFEDES
Subjt:  YPELFEQKTFEDES

XP_022158869.1 uncharacterized protein LOC111025333 [Momordica charantia]2.9e-3667.54Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        +LERI  VAYRLALPP+++AVHNVFHV MLR+Y+HDP+HVL PEPL L+E L YEE P+++LA+E ++LRN TI LVKVLW+N ++EEATWERE +++A 
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPEL EQ TF DES
Subjt:  YPELFEQKTFEDES

TrEMBL top hitse value%identityAlignment
A0A6J1D8Z5 uncharacterized protein LOC1110181441.2e-3872.81Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        +LERI  VAYRLALPP++SAVHNVFHV MLRKYVHDP+HVL  EPL ++E L Y+E PI ++ARE +VLRNR IDLVKVLW+N ++EEATWERE E+RA+
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPELFEQ+TFEDE+
Subjt:  YPELFEQKTFEDES

A0A6J1DIC9 uncharacterized protein LOC1110207554.0e-3971.05Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        +LERI  VAYRLALPP+++AVHNVFHV+MLRKY+HDP+HVL PEPL L+E L YEE P++VLARE ++LRNRTI LVKVLW+N ++EEATWERE +++  
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPELFEQ TF DES
Subjt:  YPELFEQKTFEDES

A0A6J1DM68 uncharacterized protein LOC1110222841.1e-3670.18Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        + ERI  VAY LALPP+++AVHNVFHV MLRKYVHDP+HVL  EPL ++E L Y+E PI ++ARE +VLRNR IDLVKVLW+N ++EEATWERE E+RA 
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPELFE++TFEDES
Subjt:  YPELFEQKTFEDES

A0A6J1DTB3 uncharacterized protein LOC1110241191.8e-3666.67Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        +LERI+ VAYRLALPP+++AVHNVFHV MLR+Y+HDP+HVL PEPL L+E L YE  P+++LA E ++LRNRTI LV VLW+N +++EATWERE +++A 
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPEL EQ TFEDES
Subjt:  YPELFEQKTFEDES

A0A6J1E0P3 uncharacterized protein LOC1110253331.4e-3667.54Show/hide
Query:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN
        +LERI  VAYRLALPP+++AVHNVFHV MLR+Y+HDP+HVL PEPL L+E L YEE P+++LA+E ++LRN TI LVKVLW+N ++EEATWERE +++A 
Subjt:  VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRAN

Query:  YPELFEQKTFEDES
        YPEL EQ TF DES
Subjt:  YPELFEQKTFEDES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCGAAGCCTCCTTCATTCGATGGGCACTCGGATAGTTCTGAAGCAGTGGTAGAATGGACCGCCGCATTGGAAGCATATTTCAATTTCTTGGAGCTAATGCCCAA
CAGCGGGTCCAAGGAGCTGCCTTTATGCTCAAAGGCCACGCTCGCATTTGGTGGAATGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTTGGGGTT
CAAAGGTCTTGTGCGAGACCATTTTGGCTGTCGTTTTGCTGATGTTGAGCAAGAAGCGGAGTTTGTCTCTCTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAA
GAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAACCACCTTTGCAGCAGCCTTAGCGAGCGCTCGGATGTTGGATAGGGACATCCCCAGGACGGATCGGTCCCAAGAGGT
TGGCACGTCGTCTGGTGCCAAGAAGAAGAGCGAAGTGGAAGTGCTTGCAGCTAGTCAGAAGGTCAGAAGTTCTCGTCAAGATCTAGCACGTGCACTGAGGAGTTCTTGCC
CTGTGTCACCGATGAGGAGCTCAAGGCAGAATACCCAGAGCTTTACGATGTCGATGATTCCGATGATGAAGATAGTTCCTAAGGTGGGGAGTCAGCATTCCCCTCGCTCA
AGCTTCTTAGTTGGGATCATGGAATCTTTGTTCCAAAGTGGCTTTCGAAGTCAAGCTTGGGTGTTGCAAGCTTGCTGTGAGATCTTCTGTTCCTCAGTTCGTTCAAGGCT
CGATTGGTGTCGTCTGGTTTCTAAGGAGTTGAGGATTTCCTTTGAGTTAAGCAGAAGTGGGACATCAATCCAAAGCCAAGGAGATATTGAGAATCAGTATCGAGTCATGA
CTGCGGCATTAGTTGTCGTCACGACAAGTTACCTTGGTCGTGCGAGATCGGAGCTTGGATTCGGTCTTGTTGGGTTGTTTGAGTTCTTGAAGGAAATGGTTTGGGGAGCA
AAAGCCTCTGGTGTTAAATGCCTTGTGAAGTGTGAGATGGAGTCAAGGCCAGTCTTGGAGCGCATCGAGCTTGTCGCCTACAGGTTGGCATTACCTCCAGCCATGTCTGC
AGTGCATAATGTGTTTCACGTGTTTATGCTAAGGAAGTATGTCCACGACCCTGCTCATGTGTTGAAACCAGAACCATTATCGCTTAATGAGGATTTGGCATATGAGGAGA
AGCCTATCAGGGTTTTGGCCAGGGAGGCAAGAGTCTTGAGAAACAGGACTATTGACTTGGTAAAGGTATTGTGGAAGAATCGCCGAATGGAGGAAGCGACCTGGGAAAGG
GAAGCTGAGGTTCGAGCCAATTATCCAGAACTCTTCGAGCAGAAAACTTTTGAGGACGAAAGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCGAAGCCTCCTTCATTCGATGGGCACTCGGATAGTTCTGAAGCAGTGGTAGAATGGACCGCCGCATTGGAAGCATATTTCAATTTCTTGGAGCTAATGCCCAA
CAGCGGGTCCAAGGAGCTGCCTTTATGCTCAAAGGCCACGCTCGCATTTGGTGGAATGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTTGGGGTT
CAAAGGTCTTGTGCGAGACCATTTTGGCTGTCGTTTTGCTGATGTTGAGCAAGAAGCGGAGTTTGTCTCTCTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAA
GAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAACCACCTTTGCAGCAGCCTTAGCGAGCGCTCGGATGTTGGATAGGGACATCCCCAGGACGGATCGGTCCCAAGAGGT
TGGCACGTCGTCTGGTGCCAAGAAGAAGAGCGAAGTGGAAGTGCTTGCAGCTAGTCAGAAGGTCAGAAGTTCTCGTCAAGATCTAGCACGTGCACTGAGGAGTTCTTGCC
CTGTGTCACCGATGAGGAGCTCAAGGCAGAATACCCAGAGCTTTACGATGTCGATGATTCCGATGATGAAGATAGTTCCTAAGGTGGGGAGTCAGCATTCCCCTCGCTCA
AGCTTCTTAGTTGGGATCATGGAATCTTTGTTCCAAAGTGGCTTTCGAAGTCAAGCTTGGGTGTTGCAAGCTTGCTGTGAGATCTTCTGTTCCTCAGTTCGTTCAAGGCT
CGATTGGTGTCGTCTGGTTTCTAAGGAGTTGAGGATTTCCTTTGAGTTAAGCAGAAGTGGGACATCAATCCAAAGCCAAGGAGATATTGAGAATCAGTATCGAGTCATGA
CTGCGGCATTAGTTGTCGTCACGACAAGTTACCTTGGTCGTGCGAGATCGGAGCTTGGATTCGGTCTTGTTGGGTTGTTTGAGTTCTTGAAGGAAATGGTTTGGGGAGCA
AAAGCCTCTGGTGTTAAATGCCTTGTGAAGTGTGAGATGGAGTCAAGGCCAGTCTTGGAGCGCATCGAGCTTGTCGCCTACAGGTTGGCATTACCTCCAGCCATGTCTGC
AGTGCATAATGTGTTTCACGTGTTTATGCTAAGGAAGTATGTCCACGACCCTGCTCATGTGTTGAAACCAGAACCATTATCGCTTAATGAGGATTTGGCATATGAGGAGA
AGCCTATCAGGGTTTTGGCCAGGGAGGCAAGAGTCTTGAGAAACAGGACTATTGACTTGGTAAAGGTATTGTGGAAGAATCGCCGAATGGAGGAAGCGACCTGGGAAAGG
GAAGCTGAGGTTCGAGCCAATTATCCAGAACTCTTCGAGCAGAAAACTTTTGAGGACGAAAGTTCTTAA
Protein sequenceShow/hide protein sequence
MKAKPPSFDGHSDSSEAVVEWTAALEAYFNFLELMPNSGSKELPLCSKATLAFGGMLWVKPRTAQRIPFPGWGSKVLCETILAVVLLMLSKKRSLSLLFKGPCLWSSTSE
EIRGLVRLGRPTTFAAALASARMLDRDIPRTDRSQEVGTSSGAKKKSEVEVLAASQKVRSSRQDLARALRSSCPVSPMRSSRQNTQSFTMSMIPMMKIVPKVGSQHSPRS
SFLVGIMESLFQSGFRSQAWVLQACCEIFCSSVRSRLDWCRLVSKELRISFELSRSGTSIQSQGDIENQYRVMTAALVVVTTSYLGRARSELGFGLVGLFEFLKEMVWGA
KASGVKCLVKCEMESRPVLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWER
EAEVRANYPELFEQKTFEDESS