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Lag0042146 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042146
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationchr13:37359765..37361362
RNA-Seq ExpressionLag0042146
SyntenyLag0042146
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-3765.96Show/hide
Query:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGRL
        GKANVVADALSRKSRLPKSALCGIR +LLSELRG KAV+T +SS                      ED+       KV+  PE EFELR D AIVKQGRL
Subjt:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGRL

Query:  CVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP
        CVP+IS+LKGAILEEAH+SAYAMH  STKMYRT+KKTYWWP
Subjt:  CVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-3866.2Show/hide
Query:  LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGR
        LGKANVVADALSRKSRLPKSALCGIRA+LLSELRG KAV+  ESS                      ED+       K +  PE EFELR D AIVKQGR
Subjt:  LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGR

Query:  LCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP
        LCVP+IS+LKG ILEEAH+SAYAMHP STKMYRT+KKTYWWP
Subjt:  LCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP

KAA0059550.1 reverse transcriptase [Cucumis melo var. makuwa]4.7e-3778.57Show/hide
Query:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESSEDACKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSSAYAMHPEST
        GKANVVADALSRKSRLPKSALCGIR  LL+ELRG K VVTT   ED+  + A  +VEFELR D AIVKQ RLCVP+IS+LK AILEEAHSSAYAMHP ST
Subjt:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESSEDACKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSSAYAMHPEST

Query:  KMYRTMKKTYWW
        KMYRT+KKTYWW
Subjt:  KMYRTMKKTYWW

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-3765.96Show/hide
Query:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGRL
        GKANVVADALSRKSRLPKSALCGIR +LLSELRG KAV+T +SS                      ED+       KV+  PE EFELR D AIVKQGRL
Subjt:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGRL

Query:  CVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP
        CVP+IS+LKGAILEEAH+SAYAMH  STKMYRT+KKTYWWP
Subjt:  CVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-3866.2Show/hide
Query:  LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGR
        LGKANVVADALSRKSRLPKSALCGIRA+LLSELRG KAV+  ESS                      ED+       K +  PE EFELR D AIVKQGR
Subjt:  LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGR

Query:  LCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP
        LCVP+IS+LKG ILEEAH+SAYAMHP STKMYRT+KKTYWWP
Subjt:  LCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP

TrEMBL top hitse value%identityAlignment
A0A5A7T6M8 DNA/RNA polymerases superfamily protein1.7e-3765.96Show/hide
Query:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGRL
        GKANVVADALSRKSRLPKSALCGIR +LLSELRG KAV+T +SS                      ED+       KV+  PE EFELR D AIVKQGRL
Subjt:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGRL

Query:  CVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP
        CVP+IS+LKGAILEEAH+SAYAMH  STKMYRT+KKTYWWP
Subjt:  CVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP

A0A5A7TKT0 Reverse transcriptase1.6e-3866.2Show/hide
Query:  LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGR
        LGKANVVADALSRKSRLPKSALCGIRA+LLSELRG KAV+  ESS                      ED+       K +  PE EFELR D AIVKQGR
Subjt:  LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGR

Query:  LCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP
        LCVP+IS+LKG ILEEAH+SAYAMHP STKMYRT+KKTYWWP
Subjt:  LCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP

A0A5A7UWP8 Reverse transcriptase2.3e-3778.57Show/hide
Query:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESSEDACKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSSAYAMHPEST
        GKANVVADALSRKSRLPKSALCGIR  LL+ELRG K VVTT   ED+  + A  +VEFELR D AIVKQ RLCVP+IS+LK AILEEAHSSAYAMHP ST
Subjt:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESSEDACKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSSAYAMHPEST

Query:  KMYRTMKKTYWW
        KMYRT+KKTYWW
Subjt:  KMYRTMKKTYWW

A0A5D3C867 DNA/RNA polymerases superfamily protein1.7e-3765.96Show/hide
Query:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGRL
        GKANVVADALSRKSRLPKSALCGIR +LLSELRG KAV+T +SS                      ED+       KV+  PE EFELR D AIVKQGRL
Subjt:  GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGRL

Query:  CVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP
        CVP+IS+LKGAILEEAH+SAYAMH  STKMYRT+KKTYWWP
Subjt:  CVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP

A0A5D3D150 Reverse transcriptase1.6e-3866.2Show/hide
Query:  LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGR
        LGKANVVADALSRKSRLPKSALCGIRA+LLSELRG KAV+  ESS                      ED+       K +  PE EFELR D AIVKQGR
Subjt:  LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS----------------------EDA------CKVQAWPEVEFELRADEAIVKQGR

Query:  LCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP
        LCVP+IS+LKG ILEEAH+SAYAMHP STKMYRT+KKTYWWP
Subjt:  LCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTACTTGGTAAGGCTAACGTAGTAGCAGATGCATTAAGTAGGAAGTCGAGACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGCAACCTTGCTAAGTGAGTTAAG
AGGTTTAAAGGCGGTTGTGACTACAGAAAGTTCAGAAGATGCTTGCAAAGTCCAAGCATGGCCTGAGGTAGAATTTGAGTTGAGAGCAGACGAAGCCATAGTTAAGCAGG
GAAGACTATGTGTTCCAAGTATTAGTAAGCTTAAGGGTGCTATACTGGAGGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGAAAGCACCAAGATGTACAGAACTATG
AAGAAAACTTATTGGTGGCCTGTGCCTTCGTTCTGGCTTGCCAACATTCGTGATGAAAGCATCCAACTACGAGCTCCTCATCTTTCAGGGGAAGAGTTTTTAAGAATGCG
TGAGTCACATTACACAAGAAGATTTGGTGCATTGGCTAGTAGAGAAGAAGTAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGTACTTGGTAAGGCTAACGTAGTAGCAGATGCATTAAGTAGGAAGTCGAGACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGCAACCTTGCTAAGTGAGTTAAG
AGGTTTAAAGGCGGTTGTGACTACAGAAAGTTCAGAAGATGCTTGCAAAGTCCAAGCATGGCCTGAGGTAGAATTTGAGTTGAGAGCAGACGAAGCCATAGTTAAGCAGG
GAAGACTATGTGTTCCAAGTATTAGTAAGCTTAAGGGTGCTATACTGGAGGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGAAAGCACCAAGATGTACAGAACTATG
AAGAAAACTTATTGGTGGCCTGTGCCTTCGTTCTGGCTTGCCAACATTCGTGATGAAAGCATCCAACTACGAGCTCCTCATCTTTCAGGGGAAGAGTTTTTAAGAATGCG
TGAGTCACATTACACAAGAAGATTTGGTGCATTGGCTAGTAGAGAAGAAGTAATGTAG
Protein sequenceShow/hide protein sequence
MTVLGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESSEDACKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTM
KKTYWWPVPSFWLANIRDESIQLRAPHLSGEEFLRMRESHYTRRFGALASREEVM