CuGenDBv2

Gene ID	Lag0042161
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	BED-type domain-containing protein
Genome location	chr13:37597626..37600648
RNA-Seq Expression	Lag0042161
Synteny	Lag0042161
Gene Ontology terms	GO:0009791 - post-embryonic development (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR003656 - Zinc finger, BED-type IPR036236 - Zinc finger C2H2 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ACX85638.1 putative transposase [Cucumis melo]

2.2e-71

78.16

Show/hide

Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        MTS   +ETS QS  +P         +LGKRKP KP S  WEHFI+VEGCDPKYPRAACK+CGA+YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSESNL  ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

KAA0026183.1 putative transposase [Cucumis melo var. makuwa]

2.2e-71

78.16

Show/hide

Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        MTS   +ETS QS  +P         +LGKRKP KP S  WEHFI+VEGCDPKYPRAACK+CGA+YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSESNL  ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

TYK06161.1 putative transposase [Cucumis melo var. makuwa]

2.4e-70

77.01

Show/hide

Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        MTS   +ETS QS  +P         +LGKRKP KP S  WEHFI+VEGCDPKYPRAACK+CG +YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSES+L  ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

TYK30761.1 putative transposase [Cucumis melo var. makuwa]

1.1e-67

75.29

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Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        M S   +ETS QS  +P         +LGKRK  KP   AWEHFI+VEGCDPKYPRAACK+C A+YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSES+   ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

TYK30776.1 putative transposase [Cucumis melo var. makuwa]

2.2e-71

78.16

Show/hide

Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        MTS   +ETS QS  +P         +LGKRKP KP S  WEHFI+VEGCDPKYPRAACK+CGA+YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSESNL  ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SNJ1 Putative transposase

1.1e-71

78.16

Show/hide

Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        MTS   +ETS QS  +P         +LGKRKP KP S  WEHFI+VEGCDPKYPRAACK+CGA+YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSESNL  ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

A0A5D3C2L4 Putative transposase

1.2e-70

77.01

Show/hide

Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        MTS   +ETS QS  +P         +LGKRKP KP S  WEHFI+VEGCDPKYPRAACK+CG +YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSES+L  ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

A0A5D3E4G3 Putative transposase

1.1e-71

78.16

Show/hide

Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        MTS   +ETS QS  +P         +LGKRKP KP S  WEHFI+VEGCDPKYPRAACK+CGA+YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSESNL  ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

A0A5D3E590 Putative transposase

5.5e-68

75.29

Show/hide

Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        M S   +ETS QS  +P         +LGKRK  KP   AWEHFI+VEGCDPKYPRAACK+C A+YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSES+   ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

D0UIX2 Putative transposase

1.1e-71

78.16

Show/hide

Query:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG
        MTS   +ETS QS  +P         +LGKRKP KP S  WEHFI+VEGCDPKYPRAACK+CGA+YACDSKRNGTTNLKRHLEKCKMY +  ED VEGEG
Subjt:  MTSSFTNETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEG

Query:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK
        DSESNL  ASFTQENCR MLA MVILDELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ+YM+EKK+LK
Subjt:  DSESNLTVASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLK

SwissProt top hits

e value

%identity

Alignment

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 3

1.3e-10

31.01

Show/hide

Query:  SDAWEHFIRVEGCDPKYPRAACKYCGAT--YACDSKRNGTTNLKRHLEKCKMYTSKSEDYV-----------EGEGDSE---------SNLTVASFTQEN
        S  WEHF  +E       RA+C  C  T  Y+C SK +GT++LKRH+        K+ED             +GEG +E         +    A F Q+ 
Subjt:  SDAWEHFIRVEGCDPKYPRAACKYCGAT--YACDSKRNGTTNLKRHLEKCKMYTSKSEDYV-----------EGEGDSE---------SNLTVASFTQEN

Query:  CRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRL
            LA M+IL + P   VE  GF  F  +L P+F +    T+      +Y +E++ L
Subjt:  CRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGCCCTGCCCTCTCTATGGCACGAGAGGGACTTTTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGGACTTAAGGATAAAGAGTCTTCACT
CCTCGCAGTCGTAGTCGAGTCGCAGCCGAAATTTATTGGGTCTTCACTCTCCTCTCGTGCTCGAGCTCGTGGTTGCCGCCTCCGCCGCTGCTTGTCGTGCTTGTGCGAGT
TTAAGTCGTCGTCGCCGCCGGATAGGCATCCTTCCAAATCACTGAATAAAGGTTGTTCGAGGTTGGATCAATGGTACCCACAATATCTTCCGATGACTTCGTCTTTTACA
AATGAGACTTCTGAACAAAGTACTCATACCCCTAATCTAGGTACGAGTAGTAAAGTAGGATTGTTAGGGAAAAGGAAACCTACTAAACCTGCTTCAGATGCTTGGGAGCA
TTTTATTAGAGTAGAGGGATGTGATCCTAAATATCCTAGGGCTGCTTGTAAATATTGTGGAGCTACATATGCATGTGACTCTAAGAGAAATGGGACAACAAATTTGAAAA
GACACTTAGAGAAATGTAAGATGTATACAAGTAAGTCAGAGGATTATGTTGAAGGAGAGGGGGATTCTGAAAGTAACTTGACAGTTGCATCGTTCACTCAAGAGAATTGT
AGAATGATGCTTGCTTACATGGTCATATTAGATGAGTTACCCTTTAAGTTTGTAGAAAGCGAAGGATTTCATAAATTTTGCAGGGCATTAAATCCTAAGTTTGTAATTCC
ATCACGAGTCACTGTTGCAAAAGATTGTTTTCAATTGTACATGAGGGAGAAAAAGAGGTTGAAAATGTCTTGA

mRNA sequence

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Protein sequence

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MGPALSMAREGLLFVGWTSNRLFIRGALGLKDKESSLLAVVVESQPKFIGSSLSSRARARGCRLRRCLSCLCEFKSSSPPDRHPSKSLNKGCSRLDQWYPQYLPMTSSFT
NETSEQSTHTPNLGTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPKYPRAACKYCGATYACDSKRNGTTNLKRHLEKCKMYTSKSEDYVEGEGDSESNLTVASFTQENC
RMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQLYMREKKRLKMS

Lag0042161 (gene) of Sponge gourd (AG-4) v1 genome