; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0042162 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042162
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr13:37642909..37644852
RNA-Seq ExpressionLag0042162
SyntenyLag0042162
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3164.06Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND
        EEVDNS + +QRTSVFD IKPLTTR  VFQR+SMA  EEENQC MST  R SAF+RLS+ST KK RPSTS F RLK+T+ Q +R+M + + K F E N+D
Subjt:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND

Query:  KKLQSSIPSRMKRKFSVLINTDGSLKLE
         K+ S +PSRMKRK SV INT+GSL ++
Subjt:  KKLQSSIPSRMKRKFSVLINTDGSLKLE

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.0e-3261.7Show/hide
Query:  KKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMD
        K +N   SY    EEVDNS + +QRTSVFD IKPLTTR SVFQR+SMA  EEENQC  ST  R SAF+RLS+ST KK RPSTS F RLK+T+ Q +R+M 
Subjt:  KKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMD

Query:  NLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKLE
        +L+ K F E N+D K+ S +PSRMKRK SV INT+GSL ++
Subjt:  NLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKLE

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.1e-3264.06Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND
        EEVDNS + +QRTSVFD IKPLTTR SVFQR+SMA  EEENQC MST TR SAF+RLS+S  KK RPSTS F RLK+T+ Q +R+M +L+ K F E N+D
Subjt:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND

Query:  KKLQSSIPSRMKRKFSVLINTDGSLKLE
         K+ S +PSR+KRK S+ INT+GSL ++
Subjt:  KKLQSSIPSRMKRKFSVLINTDGSLKLE

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-3163.28Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND
        EEVDNS + +QRTSVFD IKPLTTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+ST KK RPSTS F RLK+T+ Q +R+M +L+ K F E N+D
Subjt:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND

Query:  KKLQSSIPSRMKRKFSVLINTDGSLKLE
         K+ + +PSRMKRK SV INT+GSL ++
Subjt:  KKLQSSIPSRMKRKFSVLINTDGSLKLE

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3164.06Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND
        EEVDNS + +QRTSVFD IKPLTTR  VFQR+SMA  EEENQC  ST  R SAF+RLS+ST KK RPSTS F RLK+T+ Q KR+M + + K F E N+D
Subjt:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND

Query:  KKLQSSIPSRMKRKFSVLINTDGSLKLE
         K+ S +PSRMKRK SV INT+GSL ++
Subjt:  KKLQSSIPSRMKRKFSVLINTDGSLKLE

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein6.6e-3264.06Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND
        EEVDNS + +QRTSVFD IKPLTTR  VFQR+SMA  EEENQC MST  R SAF+RLS+ST KK RPSTS F RLK+T+ Q +R+M + + K F E N+D
Subjt:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND

Query:  KKLQSSIPSRMKRKFSVLINTDGSLKLE
         K+ S +PSRMKRK SV INT+GSL ++
Subjt:  KKLQSSIPSRMKRKFSVLINTDGSLKLE

A0A5A7TQ06 Retrotransposon gag protein3.9e-3261.7Show/hide
Query:  KKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMD
        K +N   SY    EEVDNS + +QRTSVFD IKPLTTR SVFQR+SMA  EEENQC  ST  R SAF+RLS+ST KK RPSTS F RLK+T+ Q +R+M 
Subjt:  KKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMD

Query:  NLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKLE
        +L+ K F E N+D K+ S +PSRMKRK SV INT+GSL ++
Subjt:  NLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKLE

A0A5A7U974 Retrotransposon gag protein3.0e-3264.06Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND
        EEVDNS + +QRTSVFD IKPLTTR SVFQR+SMA  EEENQC MST TR SAF+RLS+S  KK RPSTS F RLK+T+ Q +R+M +L+ K F E N+D
Subjt:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND

Query:  KKLQSSIPSRMKRKFSVLINTDGSLKLE
         K+ S +PSR+KRK S+ INT+GSL ++
Subjt:  KKLQSSIPSRMKRKFSVLINTDGSLKLE

A0A5A7UI09 Retrotransposon gag protein1.5e-3163.28Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND
        EEVDNS + +QRTSVFD IKPLTTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+ST KK RPSTS F RLK+T+ Q +R+M +L+ K F E N+D
Subjt:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND

Query:  KKLQSSIPSRMKRKFSVLINTDGSLKLE
         K+ + +PSRMKRK SV INT+GSL ++
Subjt:  KKLQSSIPSRMKRKFSVLINTDGSLKLE

A0A5D3D209 Retrotransposon gag protein6.6e-3264.06Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND
        EEVDNS + +QRTSVFD IKPLTTR  VFQR+SMA  EEENQC  ST  R SAF+RLS+ST KK RPSTS F RLK+T+ Q KR+M + + K F E N+D
Subjt:  EEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKRKMDNLEMKLFDEVNND

Query:  KKLQSSIPSRMKRKFSVLINTDGSLKLE
         K+ S +PSRMKRK SV INT+GSL ++
Subjt:  KKLQSSIPSRMKRKFSVLINTDGSLKLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACA
AAGGACTTCCGTCTTCGATCACATCAAGCCTCTAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCT
CCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATTGAAGAAAAGTCGACCTTCAACATCTATTTTTTATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGA
AAGATGGATAACTTGGAGATGAAACTTTTTGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCATCCCATCACGTATGAAGAGAAAGTTCTCTGTTCTCATAAATAC
AGATGGTTCCTTGAAGTTGGAAGGTTCTTCGTTGTATGTTGTTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATGTTGTTGCGTTGTTCCTTCTCCAAGTT
CGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTCCTCAGTTGTACTACTACTACGTTGTTCCTCCTCCAAGTGCGAAGGATATTATGTGG
TGTGTTGTTGCATTGTTTCTCTCAAGTTTGATGGTTCTCACGCAGCTTCGCTGGAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCT
CCAAGGTCGAAGGTTCTCACGTGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTTCAGTTCCTTCTCCCAAATTTGAGGGTTCTCACGCGCT
TCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGTCGCTTTGTTGGAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTTCTTCCTCCAAG
TTCGAAGGTTCTCACGTGCTTCGTTGCAATTCCTTCCTCATAGTTCGAAGATCTTTCTCCCTAAGTTCGAAGGTTCACACGCTTCAGCTTCTTCTCCCAAATTCGAAGGT
TCTCACGCGTTTTGCTGTAGTTCCTTCCTCCAAGTTTGAAGGTTCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCT
CCAAGTTTAAAGGTTCTCACGTCGCTTCACTACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTCCTCATGC
GTTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTTCAGTTCCTTCTCCCAAATTCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTC
CGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGTGCTCCGCTGCAGTTCCTTCCTCCAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACA
AAGGACTTCCGTCTTCGATCACATCAAGCCTCTAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCT
CCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATTGAAGAAAAGTCGACCTTCAACATCTATTTTTTATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGA
AAGATGGATAACTTGGAGATGAAACTTTTTGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCATCCCATCACGTATGAAGAGAAAGTTCTCTGTTCTCATAAATAC
AGATGGTTCCTTGAAGTTGGAAGGTTCTTCGTTGTATGTTGTTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATGTTGTTGCGTTGTTCCTTCTCCAAGTT
CGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTCCTCAGTTGTACTACTACTACGTTGTTCCTCCTCCAAGTGCGAAGGATATTATGTGG
TGTGTTGTTGCATTGTTTCTCTCAAGTTTGATGGTTCTCACGCAGCTTCGCTGGAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCT
CCAAGGTCGAAGGTTCTCACGTGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTTCAGTTCCTTCTCCCAAATTTGAGGGTTCTCACGCGCT
TCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGTCGCTTTGTTGGAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTTCTTCCTCCAAG
TTCGAAGGTTCTCACGTGCTTCGTTGCAATTCCTTCCTCATAGTTCGAAGATCTTTCTCCCTAAGTTCGAAGGTTCACACGCTTCAGCTTCTTCTCCCAAATTCGAAGGT
TCTCACGCGTTTTGCTGTAGTTCCTTCCTCCAAGTTTGAAGGTTCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCT
CCAAGTTTAAAGGTTCTCACGTCGCTTCACTACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTCCTCATGC
GTTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTTCAGTTCCTTCTCCCAAATTCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTC
CGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGTGCTCCGCTGCAGTTCCTTCCTCCAAGTTTGA
Protein sequenceShow/hide protein sequence
MLNKSFSKTFHKKKKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPLTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTLKKSRPSTSIFYRLKVTSGQSKR
KMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKLEGSSLYVVALFLLQVRRFFVVCCCVVPSPSSKVLRCILLRCSFSKFEGPQLYYYYVVPPPSAKDIMW
CVVALFLSSLMVLTQLRWSFFSLSSKVLTRFVAVPSLQGRRFSRAALQFFLPKFEGSRTSLQFLLPNLRVLTRFAAVPSSKFEGSHVALLEFLPPSSKVLTCFAAVSSSK
FEGSHVLRCNSFLIVRRSFSLSSKVHTLQLLLPNSKVLTRFAVVPSSKFEGSPLLQFIPPSSKVLTRSAAVPSSKFKGSHVASLQFLPPSSKVLTRFVAVPSLQGRRSSC
VALQFFLPKFEGSRTSLQFLLPNSLHCSSFLQVRRFSAAAVHSSKFEGSHVLRCSSFLQV