; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0042189 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0042189
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr13:38319085..38330753
RNA-Seq ExpressionLag0042189
SyntenyLag0042189
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065386.1 gag/pol protein [Cucumis melo var. makuwa]8.9e-0452.54Show/hide
Query:  MNTGLFKTATTQCEKRQRISPKGKIPFFGSKVDHINLNLIGRLDKSELLSELEDDSLLP
        +N  +F+TA TQ  KRQRISP      +  ++ HINL+ IGRL K+ LL++LEDDSL P
Subjt:  MNTGLFKTATTQCEKRQRISPKGKIPFFGSKVDHINLNLIGRLDKSELLSELEDDSLLP

KAA0067938.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-0450Show/hide
Query:  MNTGLFKTATTQCEKRQRISPKGKIPFFGSKVDHINLNLIGRLDKSELLSELEDDSLLPLLTAL
        +N  +F+TA TQ  KRQRISP      +  ++DHINL+ IGRL K+ LL++L+DDSL P  + L
Subjt:  MNTGLFKTATTQCEKRQRISPKGKIPFFGSKVDHINLNLIGRLDKSELLSELEDDSLLPLLTAL

TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]8.0e-0538.18Show/hide
Query:  RLALSQVSYIYKM-DKTEWEAGDMTTQEGIHSFPLLGEVDECSLKRLFIRGALVLKETDVTQGAIKNHSLKYSESSTEVLNKGIPPSHWHDRDFLFIGRT
        R+A     Y Y   DKTEW AG++ TQ+GIH FP LG VD+CSL                 Q  +++            LNK   P +  + +FLF G T
Subjt:  RLALSQVSYIYKM-DKTEWEAGDMTTQEGIHSFPLLGEVDECSLKRLFIRGALVLKETDVTQGAIKNHSLKYSESSTEVLNKGIPPSHWHDRDFLFIGRT

Query:  VNRLFNRGTL
        +NRLF RG L
Subjt:  VNRLFNRGTL

TrEMBL top hitse value%identityAlignment
A0A1I8GZ31 Component 3 of promoter of RISC1.5e-0430.57Show/hide
Query:  ESRLARCKDAQARGGEVDSLVQTHMVSLWMRRGRLRQSRLARCKDAQSRGGEVDSLVQAHMVSLWMRRGRFRQSRLARCKDAQARGCEVDLSVQAHMVSL
        ESRLA  + A++R  E   L ++ +    +   RL +SRLA  + A+SR  E   L ++ +    + + R  +SRLA+ + A++R  +  L+ ++ +   
Subjt:  ESRLARCKDAQARGGEVDSLVQTHMVSLWMRRGRLRQSRLARCKDAQSRGGEVDSLVQAHMVSLWMRRGRFRQSRLARCKDAQARGCEVDLSVQAHMVSL

Query:  WMRRGRLRQSRLARCKDAQSRGGEVDSLVQAHMVSLWMRRGRLRQSRLARCKDAQSR
         +   RL +SRLA  + A+SR  E   L ++ +    + + RL +SRLA+ + A+SR
Subjt:  WMRRGRLRQSRLARCKDAQSRGGEVDSLVQAHMVSLWMRRGRLRQSRLARCKDAQSR

A0A5A7VGC7 Gag/pol protein4.3e-0452.54Show/hide
Query:  MNTGLFKTATTQCEKRQRISPKGKIPFFGSKVDHINLNLIGRLDKSELLSELEDDSLLP
        +N  +F+TA TQ  KRQRISP      +  ++ HINL+ IGRL K+ LL++LEDDSL P
Subjt:  MNTGLFKTATTQCEKRQRISPKGKIPFFGSKVDHINLNLIGRLDKSELLSELEDDSLLP

A0A5A7VJG3 Gag/pol protein8.7e-0550Show/hide
Query:  MNTGLFKTATTQCEKRQRISPKGKIPFFGSKVDHINLNLIGRLDKSELLSELEDDSLLPLLTAL
        +N  +F+TA TQ  KRQRISP      +  ++DHINL+ IGRL K+ LL++L+DDSL P  + L
Subjt:  MNTGLFKTATTQCEKRQRISPKGKIPFFGSKVDHINLNLIGRLDKSELLSELEDDSLLPLLTAL

A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-943.9e-0538.18Show/hide
Query:  RLALSQVSYIYKM-DKTEWEAGDMTTQEGIHSFPLLGEVDECSLKRLFIRGALVLKETDVTQGAIKNHSLKYSESSTEVLNKGIPPSHWHDRDFLFIGRT
        R+A     Y Y   DKTEW AG++ TQ+GIH FP LG VD+CSL                 Q  +++            LNK   P +  + +FLF G T
Subjt:  RLALSQVSYIYKM-DKTEWEAGDMTTQEGIHSFPLLGEVDECSLKRLFIRGALVLKETDVTQGAIKNHSLKYSESSTEVLNKGIPPSHWHDRDFLFIGRT

Query:  VNRLFNRGTL
        +NRLF RG L
Subjt:  VNRLFNRGTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACTGGGTTGTTTAAGACTGCTACTACTCAATGTGAAAAGAGGCAAAGGATTTCTCCTAAAGGGAAAATACCTTTCTTTGGTTCTAAGGTAGACCATATTAATCT
CAATTTGATTGGGAGATTGGACAAGAGTGAACTTCTGAGCGAGTTAGAAGATGACTCTCTACTACCTTTGTTGACTGCATTGCATACTGCAGTAGGCAACCCCAAAAGGA
AACGAGAAAGTAAAGTCGATTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTGGCTGTTCAACAAAAGTTGTTGATGGATCAGTG
CATCTAGTTATCTTACTGACATTAAAGGAGCTAGCAGCTCATTTCCAAGTGGAAATTTGGGAGAAGCTGAGTTTGTTCTTGGGATCCAAATTGTTTAGGAACCGTAAGAA
CAAAAGGCTAGCCTTGTCTCAGGTGTCGTATATCTACAAGATGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCATTCCCACTTCTAG
GAGAAGTAGATGAGTGTTCCCTTAAGAGGTTGTTCATTAGAGGAGCGCTGGTACTTAAGGAGACAGATGTAACACAGGGAGCAATCAAGAATCATTCGTTGAAGTATTCA
GAGTCGTCAACGGAGGTCTTGAACAAAGGGATCCCACCCTCTCACTGGCACGATAGGGACTTTCTGTTTATTGGTAGGACCGTAAACAGGTTGTTCAATAGAGGAACACT
GTTCAGCGCGGTTCGAGTCATGTTGGAGCTTGTTCGTGCGGTCTGGATGTGTTTTGGGCCGGTTCAAGCTATTTTTGAGCTAGTTCAGCTAGTTTCAACCCGATTTTCGT
TGGTTCGAAGAGTTTGGACCTCTCTACTACCTTGGTCGTGGTCACCCTCGTCCCATGGTCGAGGCCGACTCTTCCCCCTTCGCACGATTCCTAGAGTCCTTTGGCCGCCC
CGGTTCAATCTGGTTCAGCTTAAATCTGTCTCCAAACACCTAGAAACCCTAAAACAGGAAAAGGTTTTCCCGACGCATTTTCACGTGTCGGGTAGCAAGTCAAATAGAAC
AGTCGACAAAGCTTTTGCCGACACCGTTCAGGCGAAGTTAGGTTTGTGCGTTGGGAGAAAAGCTCTCTACCGTATGGCGTCGATAGAAATGATGAGGGGGGAAGACGTGG
CCTGCAAGACAGTAAACCTGCACACCGGTGTGGTGCTCGCCACACCGGCTCCGATGCTTAAGTCAGCAAGCAGAACGGTAGGGCGTGGAAAAGTCAAACCAGGCGAAACC
GGGGCATCCAGAGGCGGTGGGGACCAGACGGGACCGAACGGGCTCGGCCTCGGCCCATGGCCGAGCAGGGGGTCGGGCCTAAAACCCGACCCCTTCGGTCTTGGCCCGTC
TCACTTGCCGGTTTTGCCCCCTTGGTCCATCTTTCAGCCCGATTCCTCCCCGGTTGTCCTCGTCAGCTCCTTGAGGCCGAGCACAGCTATCTCCCTTTCTGCTTGCCTGG
TCGGCCTCGGCCTCGGGAAGAGGCCGAGCAGTTTTCTAATTTTGCTTAGGGGCGTTGCCCCGAACCCCACCGGGCGCTTCGCCCCTGGACCCCGACTCGCTGACCGGATC
ATTCGGAGTGCTTCATTTCAGGTTCGTGTCTGCAAGAGAAAAGTTAGGGAAAAGGCTAGGGTCGGCCTCGGCCTCATGCCCCCGAGAATACCTTTAAAGTTTGTGCTCGG
CCTCGGCAAGAGGTGCTCGGCCTTGGCAAGAGGTGCTCGGTCCTGGCTTCTGCAGGGTGAGCTTGACTTAGATGAAGTGTATGGACTCATGTCAGGTGAGTCCAGGCTCG
CCCGGTGTAAGGATGCTCAGGCCAGAGGAGGTGAGGTAGACTCGTTGGTCCAGACTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTTCGGCAGTCCAGGCTCGCC
CGGTGTAAAGATGCTCAGTCCAGAGGAGGTGAGGTAGACTCGTTGGTCCAGGCTCACATGGTCTCACTCTGGATGAGGCGAGGTAGATTTCGGCAGTCCAGGCTCGCCCG
GTGTAAAGATGCTCAAGCCAGAGGATGTGAGGTAGACTTGTCGGTCCAGGCTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTTCGGCAGTCCAGGCTCGCCCGGT
GTAAAGATGCTCAGTCCAGAGGAGGTGAGGTAGACTCGTTGGTCCAGGCTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTTCGGCAGTCCAGGCTCGCCCGGTGT
AAAGATGCTCAGTCCAGAGGAGGTGAGGTAGACTCGTTGGTCCAGGTTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTCGATAGTCCAGGCTCGCATGTCTTGAT
GCTTGAGTCGGTTGCCTTGTGCACACTCCTGAATACTGAACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACACTGGGTTGTTTAAGACTGCTACTACTCAATGTGAAAAGAGGCAAAGGATTTCTCCTAAAGGGAAAATACCTTTCTTTGGTTCTAAGGTAGACCATATTAATCT
CAATTTGATTGGGAGATTGGACAAGAGTGAACTTCTGAGCGAGTTAGAAGATGACTCTCTACTACCTTTGTTGACTGCATTGCATACTGCAGTAGGCAACCCCAAAAGGA
AACGAGAAAGTAAAGTCGATTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTGGCTGTTCAACAAAAGTTGTTGATGGATCAGTG
CATCTAGTTATCTTACTGACATTAAAGGAGCTAGCAGCTCATTTCCAAGTGGAAATTTGGGAGAAGCTGAGTTTGTTCTTGGGATCCAAATTGTTTAGGAACCGTAAGAA
CAAAAGGCTAGCCTTGTCTCAGGTGTCGTATATCTACAAGATGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCATTCCCACTTCTAG
GAGAAGTAGATGAGTGTTCCCTTAAGAGGTTGTTCATTAGAGGAGCGCTGGTACTTAAGGAGACAGATGTAACACAGGGAGCAATCAAGAATCATTCGTTGAAGTATTCA
GAGTCGTCAACGGAGGTCTTGAACAAAGGGATCCCACCCTCTCACTGGCACGATAGGGACTTTCTGTTTATTGGTAGGACCGTAAACAGGTTGTTCAATAGAGGAACACT
GTTCAGCGCGGTTCGAGTCATGTTGGAGCTTGTTCGTGCGGTCTGGATGTGTTTTGGGCCGGTTCAAGCTATTTTTGAGCTAGTTCAGCTAGTTTCAACCCGATTTTCGT
TGGTTCGAAGAGTTTGGACCTCTCTACTACCTTGGTCGTGGTCACCCTCGTCCCATGGTCGAGGCCGACTCTTCCCCCTTCGCACGATTCCTAGAGTCCTTTGGCCGCCC
CGGTTCAATCTGGTTCAGCTTAAATCTGTCTCCAAACACCTAGAAACCCTAAAACAGGAAAAGGTTTTCCCGACGCATTTTCACGTGTCGGGTAGCAAGTCAAATAGAAC
AGTCGACAAAGCTTTTGCCGACACCGTTCAGGCGAAGTTAGGTTTGTGCGTTGGGAGAAAAGCTCTCTACCGTATGGCGTCGATAGAAATGATGAGGGGGGAAGACGTGG
CCTGCAAGACAGTAAACCTGCACACCGGTGTGGTGCTCGCCACACCGGCTCCGATGCTTAAGTCAGCAAGCAGAACGGTAGGGCGTGGAAAAGTCAAACCAGGCGAAACC
GGGGCATCCAGAGGCGGTGGGGACCAGACGGGACCGAACGGGCTCGGCCTCGGCCCATGGCCGAGCAGGGGGTCGGGCCTAAAACCCGACCCCTTCGGTCTTGGCCCGTC
TCACTTGCCGGTTTTGCCCCCTTGGTCCATCTTTCAGCCCGATTCCTCCCCGGTTGTCCTCGTCAGCTCCTTGAGGCCGAGCACAGCTATCTCCCTTTCTGCTTGCCTGG
TCGGCCTCGGCCTCGGGAAGAGGCCGAGCAGTTTTCTAATTTTGCTTAGGGGCGTTGCCCCGAACCCCACCGGGCGCTTCGCCCCTGGACCCCGACTCGCTGACCGGATC
ATTCGGAGTGCTTCATTTCAGGTTCGTGTCTGCAAGAGAAAAGTTAGGGAAAAGGCTAGGGTCGGCCTCGGCCTCATGCCCCCGAGAATACCTTTAAAGTTTGTGCTCGG
CCTCGGCAAGAGGTGCTCGGCCTTGGCAAGAGGTGCTCGGTCCTGGCTTCTGCAGGGTGAGCTTGACTTAGATGAAGTGTATGGACTCATGTCAGGTGAGTCCAGGCTCG
CCCGGTGTAAGGATGCTCAGGCCAGAGGAGGTGAGGTAGACTCGTTGGTCCAGACTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTTCGGCAGTCCAGGCTCGCC
CGGTGTAAAGATGCTCAGTCCAGAGGAGGTGAGGTAGACTCGTTGGTCCAGGCTCACATGGTCTCACTCTGGATGAGGCGAGGTAGATTTCGGCAGTCCAGGCTCGCCCG
GTGTAAAGATGCTCAAGCCAGAGGATGTGAGGTAGACTTGTCGGTCCAGGCTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTTCGGCAGTCCAGGCTCGCCCGGT
GTAAAGATGCTCAGTCCAGAGGAGGTGAGGTAGACTCGTTGGTCCAGGCTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTTCGGCAGTCCAGGCTCGCCCGGTGT
AAAGATGCTCAGTCCAGAGGAGGTGAGGTAGACTCGTTGGTCCAGGTTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTCGATAGTCCAGGCTCGCATGTCTTGAT
GCTTGAGTCGGTTGCCTTGTGCACACTCCTGAATACTGAACTTTAA
Protein sequenceShow/hide protein sequence
MNTGLFKTATTQCEKRQRISPKGKIPFFGSKVDHINLNLIGRLDKSELLSELEDDSLLPLLTALHTAVGNPKRKRESKVDLSKLTNEATVTSTRVVDEVGCSTKVVDGSV
HLVILLTLKELAAHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMDKTEWEAGDMTTQEGIHSFPLLGEVDECSLKRLFIRGALVLKETDVTQGAIKNHSLKYS
ESSTEVLNKGIPPSHWHDRDFLFIGRTVNRLFNRGTLFSAVRVMLELVRAVWMCFGPVQAIFELVQLVSTRFSLVRRVWTSLLPWSWSPSSHGRGRLFPLRTIPRVLWPP
RFNLVQLKSVSKHLETLKQEKVFPTHFHVSGSKSNRTVDKAFADTVQAKLGLCVGRKALYRMASIEMMRGEDVACKTVNLHTGVVLATPAPMLKSASRTVGRGKVKPGET
GASRGGGDQTGPNGLGLGPWPSRGSGLKPDPFGLGPSHLPVLPPWSIFQPDSSPVVLVSSLRPSTAISLSACLVGLGLGKRPSSFLILLRGVAPNPTGRFAPGPRLADRI
IRSASFQVRVCKRKVREKARVGLGLMPPRIPLKFVLGLGKRCSALARGARSWLLQGELDLDEVYGLMSGESRLARCKDAQARGGEVDSLVQTHMVSLWMRRGRLRQSRLA
RCKDAQSRGGEVDSLVQAHMVSLWMRRGRFRQSRLARCKDAQARGCEVDLSVQAHMVSLWMRRGRLRQSRLARCKDAQSRGGEVDSLVQAHMVSLWMRRGRLRQSRLARC
KDAQSRGGEVDSLVQVHMVSLWMRRGRLDSPGSHVLMLESVALCTLLNTEL