CuGenDBv2

Gene ID	Lcy01g006060
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Flap endonuclease GEN-like 1
Genome location	Chr01:8648051..8649403
RNA-Seq Expression	Lcy01g006060
Synteny	Lcy01g006060
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0009555 - pollen development (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0005634 - nucleus (cellular component) GO:0003690 - double-stranded DNA binding (molecular function) GO:0003697 - single-stranded DNA binding (molecular function) GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domains	IPR006084 - XPG/Rad2 endonuclease IPR036279 - 5'-3' exonuclease, C-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK24473.1 flap endonuclease GEN-like 1 [Cucumis melo var. makuwa]

6.5e-118

85.55

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTE+L+DFLVFHL+WEPSYIRQRMLPMLSTIFLRE ANNPIQTLL+GQYEFDSILREKIR+GH FY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWKKA P + NV+ E S G FGTGPEDAIDVDE VDLTDE DSP+IHIQDGCSFLLTDENM+LV AAYPEQAAKFLQE E+KRQKTP+TP C GTSGK
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE
        SDSSKAKGVQLSITEFYRATKTQQ T D  DSTNE EETSTGKRK SSSSTLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE

XP_022964472.1 flap endonuclease GEN-like 1 isoform X1 [Cucurbita moschata]

3.8e-118

85.98

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        MEPNFPSSEL+Q+YL DNHSYFSDDDLILSW SP+TE+LIDFLVFHLRWEPSYIRQR+LPMLSTIFLRE ANNPIQTLLY QYEFDSILREKIRYGHPFY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWK+A P L NVV EGSS G GTGPEDAIDVDEPVDLTDESDSP+IHIQ+GCSFLLTDENMDLVRAAYPEQ AKFLQE EVKRQKTP T P   TSGK
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK--SSSSTLSKSVRRRLLFE
        SDS KAKG QLSITEFYRATKTQQ T +  D TNEGEETST KRK  SSSSTLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK--SSSSTLSKSVRRRLLFE

XP_022964473.1 flap endonuclease GEN-like 1 isoform X2 [Cucurbita moschata]

3.8e-118

85.98

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        MEPNFPSSEL+Q+YL DNHSYFSDDDLILSW SP+TE+LIDFLVFHLRWEPSYIRQR+LPMLSTIFLRE ANNPIQTLLY QYEFDSILREKIRYGHPFY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWK+A P L NVV EGSS G GTGPEDAIDVDEPVDLTDESDSP+IHIQ+GCSFLLTDENMDLVRAAYPEQ AKFLQE EVKRQKTP T P   TSGK
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK--SSSSTLSKSVRRRLLFE
        SDS KAKG QLSITEFYRATKTQQ T +  D TNEGEETST KRK  SSSSTLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK--SSSSTLSKSVRRRLLFE

XP_038876411.1 flap endonuclease GEN-like 1 isoform X1 [Benincasa hispida]

1.1e-120

86.69

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Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTEML+DFLVFHLRWEPSYIRQRMLPMLSTIFLRE ANNPIQTLLYGQYEFDSILREKIRYGHPFY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWKKA PTL NV+ EGSS GFGTGP+DAID+DE VDLTDESDSP+IHIQDGCSFLLTDEN+DLV AAYPEQAA FLQE E+KRQKTP TP C GTSGK
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE
        SDSSK KGVQLSITEFYRATKTQQ T +  D TNE EETSTGKRK S+SSTLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE

XP_038876412.1 flap endonuclease GEN-like 1 isoform X2 [Benincasa hispida]

1.1e-120

86.69

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTEML+DFLVFHLRWEPSYIRQRMLPMLSTIFLRE ANNPIQTLLYGQYEFDSILREKIRYGHPFY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWKKA PTL NV+ EGSS GFGTGP+DAID+DE VDLTDESDSP+IHIQDGCSFLLTDEN+DLV AAYPEQAA FLQE E+KRQKTP TP C GTSGK
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE
        SDSSK KGVQLSITEFYRATKTQQ T +  D TNE EETSTGKRK S+SSTLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TAP1 Flap endonuclease GEN-like 1

3.2e-118

85.55

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTE+L+DFLVFHL+WEPSYIRQRMLPMLSTIFLRE ANNPIQTLL+GQYEFDSILREKIR+GH FY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWKKA P + NV+ E S G FGTGPEDAIDVDE VDLTDE DSP+IHIQDGCSFLLTDENM+LV AAYPEQAAKFLQE E+KRQKTP+TP C GTSGK
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE
        SDSSKAKGVQLSITEFYRATKTQQ T D  DSTNE EETSTGKRK SSSSTLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE

A0A5D3DLF9 Flap endonuclease GEN-like 1

3.2e-118

85.55

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTE+L+DFLVFHL+WEPSYIRQRMLPMLSTIFLRE ANNPIQTLL+GQYEFDSILREKIR+GH FY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWKKA P + NV+ E S G FGTGPEDAIDVDE VDLTDE DSP+IHIQDGCSFLLTDENM+LV AAYPEQAAKFLQE E+KRQKTP+TP C GTSGK
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE
        SDSSKAKGVQLSITEFYRATKTQQ T D  DSTNE EETSTGKRK SSSSTLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK-SSSSTLSKSVRRRLLFE

A0A6J1DSI1 flap endonuclease GEN-like 1 isoform X2

7.0e-118

84.29

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        +EP FPSSEL+++YL DNHS+FSDDDLILSWGSPRTEML+DFLVFHLRWEPSYIRQRMLPMLSTIFLRE ANNPI TLLYGQYEFDSILREKIRYGH FY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWKKA P L NV+ EGSS G GTGPED IDVDEPVDLTDESDSP+IHIQDGCSFLLTDENMDLVRAAYPEQAAKFL E E+K+QK   + PC GTS K
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLFE
        SDSSK KGVQLSITEFYR+TK QQA +  DSTNEGEETSTGKRK SS+TLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLFE

A0A6J1HHW8 flap endonuclease GEN-like 1 isoform X1

1.9e-118

85.98

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        MEPNFPSSEL+Q+YL DNHSYFSDDDLILSW SP+TE+LIDFLVFHLRWEPSYIRQR+LPMLSTIFLRE ANNPIQTLLY QYEFDSILREKIRYGHPFY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWK+A P L NVV EGSS G GTGPEDAIDVDEPVDLTDESDSP+IHIQ+GCSFLLTDENMDLVRAAYPEQ AKFLQE EVKRQKTP T P   TSGK
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK--SSSSTLSKSVRRRLLFE
        SDS KAKG QLSITEFYRATKTQQ T +  D TNEGEETST KRK  SSSSTLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK--SSSSTLSKSVRRRLLFE

A0A6J1HKX7 flap endonuclease GEN-like 1 isoform X2

1.9e-118

85.98

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY
        MEPNFPSSEL+Q+YL DNHSYFSDDDLILSW SP+TE+LIDFLVFHLRWEPSYIRQR+LPMLSTIFLRE ANNPIQTLLY QYEFDSILREKIRYGHPFY
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK
        VVKWK+A P L NVV EGSS G GTGPEDAIDVDEPVDLTDESDSP+IHIQ+GCSFLLTDENMDLVRAAYPEQ AKFLQE EVKRQKTP T P   TSGK
Subjt:  VVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGK

Query:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK--SSSSTLSKSVRRRLLFE
        SDS KAKG QLSITEFYRATKTQQ T +  D TNEGEETST KRK  SSSSTLSKSVRRRLLF+
Subjt:  SDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETSTGKRK--SSSSTLSKSVRRRLLFE

SwissProt top hits

e value

%identity

Alignment

Q64MA3 Flap endonuclease GEN-like 1

2.6e-45

41.9

Show/hide

Query:  EPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQT-LLYGQYEFDSILREKIRYGHPFY
        E NFP+ E++ +YL D++    +   +L+W  P  E+L+DFL F   WEP+YIRQRMLPMLSTI+LRE A++  ++ LLY QY+F SI R KIRYGHP+Y
Subjt:  EPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQT-LLYGQYEFDSILREKIRYGHPFY

Query:  VVKWKKAT-------PTLGNVVNEGSSGGFGT--GPEDAID--------VDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEV
        +VKWK+ T       P       EG +       G ++ +D        + E  +L DE D P++   D   FLLTDE+++LV AA+P++A +F +E  +
Subjt:  VVKWKKAT-------PTLGNVVNEGSSGGFGT--GPEDAID--------VDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEV

Query:  KRQKTPATPPCGGTSG--KSDSSKAKGVQLSITEFYRATKTQQATDAGDSTNEGEETSTGKRKSS----SSTLSKSVRRRLLFE
        K  K+ A       +G       +  GVQLSI EFYR+ K       G S + G++   G RKSS    S  L KSVRRRLLF+
Subjt:  KRQKTPATPPCGGTSG--KSDSSKAKGVQLSITEFYRATKTQQATDAGDSTNEGEETSTGKRKSS----SSTLSKSVRRRLLFE

Q9LPD2 Flap endonuclease GEN-like 1

6.7e-41

39.55

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKA-NNPIQTLLYGQYEFDSILREKIRYGHPF
        + P FP+ +++++YL D     + D   +SWG+P T ML+D +VF L W+PSY+R+ +LPMLSTI+LREKA NN    LL  QYEF SI   K RYGH  
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKA-NNPIQTLLYGQYEFDSILREKIRYGHPF

Query:  YVVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDV----DEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCG
        +V++W+K   T G   +          PE++I V    +E VD  D  + P++   +G  FLLTDE + LV++A+P++   FL E +++  K        
Subjt:  YVVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDV----DEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCG

Query:  GTSGKSDSSKAKGVQLSITEFYRATK---TQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLF
             +  +   GVQ SIT+FYR+ K     Q+ + G S+    E       +SSS L+KSVRRRLLF
Subjt:  GTSGKSDSSKAKGVQLSITEFYRATK---TQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLF

Arabidopsis top hits

e value

%identity

Alignment

AT1G01880.1 5'-3' exonuclease family protein

4.8e-42

39.55

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKA-NNPIQTLLYGQYEFDSILREKIRYGHPF
        + P FP+ +++++YL D     + D   +SWG+P T ML+D +VF L W+PSY+R+ +LPMLSTI+LREKA NN    LL  QYEF SI   K RYGH  
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKA-NNPIQTLLYGQYEFDSILREKIRYGHPF

Query:  YVVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDV----DEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCG
        +V++W+K   T G   +          PE++I V    +E VD  D  + P++   +G  FLLTDE + LV++A+P++   FL E +++  K        
Subjt:  YVVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDV----DEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCG

Query:  GTSGKSDSSKAKGVQLSITEFYRATK---TQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLF
             +  +   GVQ SIT+FYR+ K     Q+ + G S+    E       +SSS L+KSVRRRLLF
Subjt:  GTSGKSDSSKAKGVQLSITEFYRATK---TQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLF

AT1G01880.2 5'-3' exonuclease family protein

4.8e-42

39.55

Show/hide

Query:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKA-NNPIQTLLYGQYEFDSILREKIRYGHPF
        + P FP+ +++++YL D     + D   +SWG+P T ML+D +VF L W+PSY+R+ +LPMLSTI+LREKA NN    LL  QYEF SI   K RYGH  
Subjt:  MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKA-NNPIQTLLYGQYEFDSILREKIRYGHPF

Query:  YVVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDV----DEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCG
        +V++W+K   T G   +          PE++I V    +E VD  D  + P++   +G  FLLTDE + LV++A+P++   FL E +++  K        
Subjt:  YVVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDV----DEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCG

Query:  GTSGKSDSSKAKGVQLSITEFYRATK---TQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLF
             +  +   GVQ SIT+FYR+ K     Q+ + G S+    E       +SSS L+KSVRRRLLF
Subjt:  GTSGKSDSSKAKGVQLSITEFYRATK---TQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGCCAAATTTTCCCAGTAGTGAACTTGTTCAAATATACCTGGGCGACAATCATAGTTATTTTAGTGATGATGACCTTATATTATCTTGGGGAAGCCCGAGA
ACCGAAATGCTGATTGATTTTTTAGTTTTTCATCTACGGTGGGAGCCATCTTACATTCGTCAAAGGATGCTTCCCATGCTATCCACCATTTTTCTCAGAGAAAAG
GCTAATAATCCAATTCAAACTTTGTTATACGGCCAGTACGAGTTTGATTCCATACTTAGAGAAAAAATAAGATATGGACATCCGTTTTATGTTGTCAAATGGAAA
AAGGCCACCCCTACACTCGGCAATGTTGTAAACGAAGGCTCTTCCGGGGGATTTGGCACTGGACCAGAAGATGCCATTGACGTCGATGAACCAGTGGATTTAACG
GATGAATCTGATTCCCCAGAAATTCATATTCAAGACGGGTGCTCCTTTTTGTTGACCGACGAGAATATGGACCTTGTACGTGCTGCATATCCTGAACAGGCTGCC
AAATTTTTGCAGGAAATGGAAGTGAAAAGGCAAAAGACACCAGCCACTCCACCTTGCGGCGGGACTAGCGGAAAGTCTGATTCATCGAAGGCGAAAGGTGTCCAG
TTAAGTATAACCGAGTTCTATCGTGCAACCAAAACACAACAAGCAACGGATGCAGGAGATTCGACAAATGAGGGCGAGGAGACAAGTACTGGAAAGAGGAAATCA
TCAAGTTCTACTCTTTCAAAGTCGGTAAGACGTCGCCTTTTGTTCGAGGACTAG

mRNA sequence

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Protein sequence

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MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWK
KATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGKSDSSKAKGVQ
LSITEFYRATKTQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLFED

Lcy01g006060 (gene) of Sponge gourd (P93075) v1 genome