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Lcy01g006480 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g006480
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
Genome locationChr01:9962860..9964651
RNA-Seq ExpressionLcy01g006480
SyntenyLcy01g006480
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONK66393.1 uncharacterized protein A4U43_C06F7380 [Asparagus officinalis]6.0e-0429.85Show/hide
Query:  WAE---NSKNGGFSLNSLHAEGKALL----WGLECAREIGIQEL--------------QLKSDALRMW-GFVWARDLLQSGMRKQIGNGKSTYFLKYPWT
        WAE   N  +GG     L    +ALL    W +  +    ++ L              ++K  A  MW   VW +++LQ GMR ++G+G         W 
Subjt:  WAE---NSKNGGFSLNSLHAEGKALL----WGLECAREIGIQEL--------------QLKSDALRMW-GFVWARDLLQSGMRKQIGNGKSTYFLKYPWT

Query:  PKVSTFKPIPILEIDLQENVLVADFITPTMEWNV
        P+  TF+ I      + EN  VAD I P+  WNV
Subjt:  PKVSTFKPIPILEIDLQENVLVADFITPTMEWNV

XP_021801569.1 uncharacterized protein LOC110745747 isoform X1 [Prunus avium]7.8e-0441.27Show/hide
Query:  VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNV
        +W R+LL SG+RK IG+G+ T      W P  ++F+PI    +D  +   V+DFI P   WNV
Subjt:  VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNV

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.7e-0440.91Show/hide
Query:  GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVS
        GF+W RDLL  G+R ++GNG +      PW P+ +TFKP+      L  +  VA FIT    W+V+
Subjt:  GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVS

XP_030483228.1 uncharacterized protein LOC115699823 [Cannabis sativa]8.4e-0629.66Show/hide
Query:  WAENSKNGGFSLNSLHAEGKALL----WGLECAREIGIQELQLKSDALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQE
        + ++   GG    +     +ALL    W ++ +R   +      + +L   G  W R+LL+ G+R ++GNG        PW P  S F P   +      
Subjt:  WAENSKNGGFSLNSLHAEGKALL----WGLECAREIGIQELQLKSDALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQE

Query:  NVLVADFITPTMEWNVSK
        N  VA++ITP  EWN+SK
Subjt:  NVLVADFITPTMEWNVSK

XP_030509050.1 uncharacterized protein LOC115723712 [Cannabis sativa]9.3e-0543.08Show/hide
Query:  VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSK
        VW ++LL  G+R +IG+G     +  PW P  S FKP+  L  D   +V VADFIT + +W+V K
Subjt:  VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSK

TrEMBL top hitse value%identityAlignment
A0A5P1EL44 Uncharacterized protein2.9e-0429.85Show/hide
Query:  WAE---NSKNGGFSLNSLHAEGKALL----WGLECAREIGIQEL--------------QLKSDALRMW-GFVWARDLLQSGMRKQIGNGKSTYFLKYPWT
        WAE   N  +GG     L    +ALL    W +  +    ++ L              ++K  A  MW   VW +++LQ GMR ++G+G         W 
Subjt:  WAE---NSKNGGFSLNSLHAEGKALL----WGLECAREIGIQEL--------------QLKSDALRMW-GFVWARDLLQSGMRKQIGNGKSTYFLKYPWT

Query:  PKVSTFKPIPILEIDLQENVLVADFITPTMEWNV
        P+  TF+ I      + EN  VAD I P+  WNV
Subjt:  PKVSTFKPIPILEIDLQENVLVADFITPTMEWNV

A0A6J1DX30 uncharacterized protein LOC1110248741.3e-0440.91Show/hide
Query:  GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVS
        GF+W RDLL  G+R ++GNG +      PW P+ +TFKP+      L  +  VA FIT    W+V+
Subjt:  GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVS

A0A6P5RF81 uncharacterized protein LOC110745747 isoform X13.8e-0441.27Show/hide
Query:  VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNV
        +W R+LL SG+RK IG+G+ T      W P  ++F+PI    +D  +   V+DFI P   WNV
Subjt:  VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNV

A0A803NM27 Uncharacterized protein6.9e-0644.44Show/hide
Query:  ALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSK
        +L   GF W R+LL+ G+R Q+GNG        PW P  S F PI            VAD+ITP  EWNVSK
Subjt:  ALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSK

A0A803Q8J4 Uncharacterized protein6.9e-0641.89Show/hide
Query:  SDALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSK
        + +L   G  W R+LL+ G+RK++GNG S      PW P    F PI         N +VAD+ITP  EWN SK
Subjt:  SDALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTGGTTGGATGCTGCATGGCGGAAGGAGACGCTGGTTACTAGTCTGGGGTGGTCATTGAGAGAGCAGGATGGAACTATATGGGCTGAAAATTCCAAGAAT
GGGGGATTTAGCTTAAATAGTCTACATGCAGAGGGTAAGGCCCTGCTATGGGGTTTGGAATGTGCGAGGGAGATTGGAATTCAAGAGTTGCAGTTGAAATCCGAT
GCTTTGCGAATGTGGGGATTTGTATGGGCAAGAGATCTTTTACAAAGTGGCATGAGAAAACAGATTGGAAATGGTAAATCTACATATTTTCTCAAATATCCTTGG
ACGCCCAAGGTGAGCACTTTCAAGCCAATCCCAATTCTTGAGATTGATTTACAGGAGAATGTTCTAGTTGCTGATTTCATTACGCCAACAATGGAATGGAATGTG
AGCAAATCTATACCATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGTGGTTGGATGCTGCATGGCGGAAGGAGACGCTGGTTACTAGTCTGGGGTGGTCATTGAGAGAGCAGGATGGAACTATATGGGCTGAAAATTCCAAGAAT
GGGGGATTTAGCTTAAATAGTCTACATGCAGAGGGTAAGGCCCTGCTATGGGGTTTGGAATGTGCGAGGGAGATTGGAATTCAAGAGTTGCAGTTGAAATCCGAT
GCTTTGCGAATGTGGGGATTTGTATGGGCAAGAGATCTTTTACAAAGTGGCATGAGAAAACAGATTGGAAATGGTAAATCTACATATTTTCTCAAATATCCTTGG
ACGCCCAAGGTGAGCACTTTCAAGCCAATCCCAATTCTTGAGATTGATTTACAGGAGAATGTTCTAGTTGCTGATTTCATTACGCCAACAATGGAATGGAATGTG
AGCAAATCTATACCATATTGA
Protein sequenceShow/hide protein sequence
MMWLDAAWRKETLVTSLGWSLREQDGTIWAENSKNGGFSLNSLHAEGKALLWGLECAREIGIQELQLKSDALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPW
TPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSKSIPY