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Lcy01g007580 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g007580
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptiontRNA-specific adenosine deaminase 1 isoform X1
Genome locationChr01:14186845..14187685
RNA-Seq ExpressionLcy01g007580
SyntenyLcy01g007580
Gene Ontology termsGO:0006382 - adenosine to inosine editing (biological process)
GO:0006396 - RNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003725 - double-stranded RNA binding (molecular function)
GO:0003726 - double-stranded RNA adenosine deaminase activity (molecular function)
GO:0008251 - tRNA-specific adenosine deaminase activity (molecular function)
InterPro domainsIPR002466 - Adenosine deaminase/editase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575167.1 tRNA-specific adenosine deaminase TAD1, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4168.97Show/hide
Query:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC
        CF   SS+E+WG TISEKVFSL N+LPKKGKPQGREV V+ A LVS  SAQDLEVVALG GT CLGRSQLSSNGD+VN  HA+IIA RALMR        
Subjt:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC

Query:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
         +L  NN E+ HH+TKK+  DNV +FLFQLDEE G ERKYVM+KG
Subjt:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

XP_022959067.1 tRNA-specific adenosine deaminase 1 isoform X1 [Cucurbita moschata]1.9e-4270.34Show/hide
Query:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC
        CF   SSSE+WG TISEKVFSL N+LPKKGKPQGREV V+ A LVS  SAQDLEVVALG GT CLGRSQLSSNGD+VN  HA+IIA RALMR        
Subjt:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC

Query:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
         +L  NN E+EHH+TKK+  DNV +FLFQLDEE G ERKYVM+KG
Subjt:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

XP_022959069.1 tRNA-specific adenosine deaminase 1 isoform X2 [Cucurbita moschata]1.9e-4270.34Show/hide
Query:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC
        CF   SSSE+WG TISEKVFSL N+LPKKGKPQGREV V+ A LVS  SAQDLEVVALG GT CLGRSQLSSNGD+VN  HA+IIA RALMR        
Subjt:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC

Query:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
         +L  NN E+EHH+TKK+  DNV +FLFQLDEE G ERKYVM+KG
Subjt:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

XP_023006585.1 tRNA-specific adenosine deaminase 1 isoform X1 [Cucurbita maxima]2.7e-4169.78Show/hide
Query:  SSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFVN
        SSE+WG T+SEKVFSL N+LPKKGKPQG EV V+ A LVS  SAQDLEVVALG GT CLGRSQLSSNGD+VN  HA+IIA RALMR         +L  N
Subjt:  SSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFVN

Query:  NRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
        N E+EHH+TKK+  DNV +FLFQLDEE G ERKYVM+KG
Subjt:  NRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

XP_023006586.1 tRNA-specific adenosine deaminase 1 isoform X2 [Cucurbita maxima]2.7e-4169.78Show/hide
Query:  SSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFVN
        SSE+WG T+SEKVFSL N+LPKKGKPQG EV V+ A LVS  SAQDLEVVALG GT CLGRSQLSSNGD+VN  HA+IIA RALMR         +L  N
Subjt:  SSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFVN

Query:  NRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
        N E+EHH+TKK+  DNV +FLFQLDEE G ERKYVM+KG
Subjt:  NRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

TrEMBL top hitse value%identityAlignment
A0A0A0KCY7 A to I editase domain-containing protein6.1e-3964.75Show/hide
Query:  SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFV
        SS E WG TISEKV S+ NTLPKKGKPQGREV V+ A L+S  S QDLEVVALG GT CLGRSQLSSNGD+VN  HA+++A RALMR        Y+   
Subjt:  SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFV

Query:  NNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKK
        +N E+EHH+TKK+  DNV +FL Q+DEE G ERKYVM+K
Subjt:  NNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKK

A0A6J1H3J2 tRNA-specific adenosine deaminase 1 isoform X19.1e-4370.34Show/hide
Query:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC
        CF   SSSE+WG TISEKVFSL N+LPKKGKPQGREV V+ A LVS  SAQDLEVVALG GT CLGRSQLSSNGD+VN  HA+IIA RALMR        
Subjt:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC

Query:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
         +L  NN E+EHH+TKK+  DNV +FLFQLDEE G ERKYVM+KG
Subjt:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

A0A6J1H6X3 tRNA-specific adenosine deaminase 1 isoform X29.1e-4370.34Show/hide
Query:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC
        CF   SSSE+WG TISEKVFSL N+LPKKGKPQGREV V+ A LVS  SAQDLEVVALG GT CLGRSQLSSNGD+VN  HA+IIA RALMR        
Subjt:  CF---SSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSC

Query:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
         +L  NN E+EHH+TKK+  DNV +FLFQLDEE G ERKYVM+KG
Subjt:  YYLFVNNRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

A0A6J1KY57 tRNA-specific adenosine deaminase 1 isoform X21.3e-4169.78Show/hide
Query:  SSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFVN
        SSE+WG T+SEKVFSL N+LPKKGKPQG EV V+ A LVS  SAQDLEVVALG GT CLGRSQLSSNGD+VN  HA+IIA RALMR         +L  N
Subjt:  SSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFVN

Query:  NRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
        N E+EHH+TKK+  DNV +FLFQLDEE G ERKYVM+KG
Subjt:  NRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

A0A6J1L0J0 tRNA-specific adenosine deaminase 1 isoform X11.3e-4169.78Show/hide
Query:  SSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFVN
        SSE+WG T+SEKVFSL N+LPKKGKPQG EV V+ A LVS  SAQDLEVVALG GT CLGRSQLSSNGD+VN  HA+IIA RALMR         +L  N
Subjt:  SSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMRLHSILRSCYYLFVN

Query:  NRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
        N E+EHH+TKK+  DNV +FLFQLDEE G ERKYVM+KG
Subjt:  NRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

SwissProt top hitse value%identityAlignment
F4HU58 tRNA-specific adenosine deaminase TAD12.6e-1845.65Show/hide
Query:  ENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR-LHSILRSCYYLFVNN
        E+WG T+SEKV S   +LPKKGKPQGREV V+ A LVS  S QD +V+ALG GT C+  S LS  GDIVN  HA+++A RAL+R  +S ++       + 
Subjt:  ENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR-LHSILRSCYYLFVNN

Query:  RENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
        + NE  R +        S L   D     E KY +K G
Subjt:  RENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG

Q4R7N3 tRNA-specific adenosine deaminase 14.3e-0537.21Show/hide
Query:  LPKKGKPQGREVIVMVAVLVSPYSAQD-------------LEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR--LHSI
        LPKKGKP+      ++A +V   S  D              EVV++G GT C+G+S++  +GDI+N  HA++IA R   R  LH +
Subjt:  LPKKGKPQGREVIVMVAVLVSPYSAQD-------------LEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR--LHSI

Q9BUB4 tRNA-specific adenosine deaminase 15.0e-0638.37Show/hide
Query:  LPKKGKPQGREVIVMVAVLVSPYSAQD-------------LEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR--LHSI
        LPKKGKP+      ++A +V   S  D              EVV++G GT C+G+S++  NGDI+N  HA++IA R+  R  LH +
Subjt:  LPKKGKPQGREVIVMVAVLVSPYSAQD-------------LEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR--LHSI

Q9JHI2 tRNA-specific adenosine deaminase 14.3e-0539.53Show/hide
Query:  LPKKGKPQ-GREVIVMVAVLVSPYSAQDL------------EVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR--LHSI
        LPK+GKP+  RE  ++ AV+    SA               EVV++G GT C+G+S++  +GDI+N  HA+IIA R+  R  LH +
Subjt:  LPKKGKPQ-GREVIVMVAVLVSPYSAQDL------------EVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR--LHSI

Q9V3R6 tRNA-specific adenosine deaminase 11.5e-0533.33Show/hide
Query:  ISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR
        I+E       +LPK GKP   +  ++  ++    + +  ++V+LG GT C+G S+L  NG I+N  HA+++A R  +R
Subjt:  ISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR

Arabidopsis top hitse value%identityAlignment
AT1G01760.1 adenosine deaminases;RNA binding;RNA binding;adenosine deaminases1.8e-1945.65Show/hide
Query:  ENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR-LHSILRSCYYLFVNN
        E+WG T+SEKV S   +LPKKGKPQGREV V+ A LVS  S QD +V+ALG GT C+  S LS  GDIVN  HA+++A RAL+R  +S ++       + 
Subjt:  ENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVN-LHAKIIAWRALMR-LHSILRSCYYLFVNN

Query:  RENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG
        + NE  R +        S L   D     E KY +K G
Subjt:  RENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGCTTGCTTCTCTTCTTCAGAGAACTGGGGAGCGACGATATCAGAGAAAGTATTCTCACTTGACAACACTCTCCCAAAGAAAGGCAAGCCTCAGGGTCGC
GAAGTCATTGTCATGGTTGCAGTTCTTGTTTCACCTTATTCAGCACAAGATTTGGAAGTTGTGGCGTTAGGGATAGGGACGATGTGTCTCGGTCGCTCACAGTTA
AGCTCAAATGGTGACATTGTGAATTTGCACGCAAAAATAATTGCTTGGAGAGCTTTAATGAGGCTTCACTCAATTTTGCGTTCTTGTTATTATCTTTTCGTAAAC
AACCGTGAAAATGAACATCACAGAACGAAAAAGATATGGAGTGACAATGTAAAAAGCTTTTTGTTTCAATTAGATGAGGAGGGTGGAACTGAAAGAAAATATGTC
ATGAAAAAGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGCTTGCTTCTCTTCTTCAGAGAACTGGGGAGCGACGATATCAGAGAAAGTATTCTCACTTGACAACACTCTCCCAAAGAAAGGCAAGCCTCAGGGTCGC
GAAGTCATTGTCATGGTTGCAGTTCTTGTTTCACCTTATTCAGCACAAGATTTGGAAGTTGTGGCGTTAGGGATAGGGACGATGTGTCTCGGTCGCTCACAGTTA
AGCTCAAATGGTGACATTGTGAATTTGCACGCAAAAATAATTGCTTGGAGAGCTTTAATGAGGCTTCACTCAATTTTGCGTTCTTGTTATTATCTTTTCGTAAAC
AACCGTGAAAATGAACATCACAGAACGAAAAAGATATGGAGTGACAATGTAAAAAGCTTTTTGTTTCAATTAGATGAGGAGGGTGGAACTGAAAGAAAATATGTC
ATGAAAAAGGGATGA
Protein sequenceShow/hide protein sequence
MLACFSSSENWGATISEKVFSLDNTLPKKGKPQGREVIVMVAVLVSPYSAQDLEVVALGIGTMCLGRSQLSSNGDIVNLHAKIIAWRALMRLHSILRSCYYLFVN
NRENEHHRTKKIWSDNVKSFLFQLDEEGGTERKYVMKKG