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Lcy01g007700 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g007700
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationChr01:14728356..14728839
RNA-Seq ExpressionLcy01g007700
SyntenyLcy01g007700
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2073.42Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSIP PSSQFLHN  PS G A F  MAKSPKS+SSEQK+SHEGSV+ESLPNGMFRV LDN+DLILGYISG   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]4.7e-2173.42Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSIP PSSQFLHN  PS GP  F  MAKSPKS+SSEQK+SHEGSV+ESLPNGMFRV LDN+DLILGYISG   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
XP_022976599.1 uncharacterized protein LOC111476947 [Cucurbita maxima]6.8e-2070.89Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSI  P+SQFL N  PS GPARFA MAK PKSDS+EQKWS+EGS+VESLPNGMFRV LDN+DLILGYI G   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
XP_022981301.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita maxima]4.2e-2275.95Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSIP PSSQFLHN  PS GPA FA MAKSPKS+SSEQK+SHEGSV+ESLPNGMFRV LDN+DLILGYISG   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
XP_023535140.1 uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo]8.8e-2070.89Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSI  P+SQFL N  PS GPARFA MAK PKSDS+EQKWS+EGS+VESLPNGMFRV LDN+DLILGYI G   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
TrEMBL top hitse value%identityAlignment
A0A5A7V7J3 Translation initiation factor IF-11.8e-1869.62Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSI  P+SQFLH  +PS  P  FA MAKSPK+D+SEQK SHEGSVVESLPNGMFRV LDN+DLILGYISG   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
A0A6J1FET6 uncharacterized protein LOC1114432996.2e-1968.35Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSI   +SQFL N  PS GPARFA MAK PKSDS+EQKWS+EGS+V+SLPNGMFRV LDN+DLILGYI G   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like2.3e-2173.42Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSIP PSSQFLHN  PS GP  F  MAKSPKS+SSEQK+SHEGSV+ESLPNGMFRV LDN+DLILGYISG   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
A0A6J1IP00 uncharacterized protein LOC1114769473.3e-2070.89Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSI  P+SQFL N  PS GPARFA MAK PKSDS+EQKWS+EGS+VESLPNGMFRV LDN+DLILGYI G   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like2.1e-2275.95Show/hide
Query:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        +  VSIP PSSQFLHN  PS GPA FA MAKSPKS+SSEQK+SHEGSV+ESLPNGMFRV LDN+DLILGYISG   K +
Subjt:  MQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic3.9e-1080Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISG
        EQKW+HEG + ESLPNGMFRV LDN+DLILGY+SG
Subjt:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISG
P69041 Translation initiation factor IF-1, chloroplastic8.6e-1080Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISG
        EQKW HEG + ESLPNGMFRV LDN+DLILGY+SG
Subjt:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISG
Q94KR7 Translation initiation factor IF-1, chloroplastic3.5e-1160.32Show/hide
Query:  PSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        P   + PA  A  A  P   S EQKW HEG ++ESLPNGMFRV LDN+DLILGYISG   K Y
Subjt:  PSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
Q94KR9 Translation initiation factor IF-1, chloroplastic6.0e-1169.77Show/hide
Query:  SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        S EQKW+HEGS+ ESLPNGMFRV LDN D++LGYISG   K +
Subjt:  SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
Q95GN3 Translation initiation factor IF-1, chloroplastic6.6e-1082.86Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISG
        EQKW HEG + ESLPNGMFRV LDN+DLILGYISG
Subjt:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISG
Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein5.0e-0548.39Show/hide
Query:  SPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY
        S   G A  +  AK P+      K   EG V ESLPNGMFRV L+N D ILGYI G   K +
Subjt:  SPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAGAGGAAATGCAAGGGGTTTTGGGGAGAAAATGCATGGAGGTGGGAATGCAAACAGTCTCAATCCCTTCTCCGAGCTCTCAATTCCTCCATAACCCTTCCCC
TTCCAGTGGTCCGGCAAGGTTCGCTCACATGGCCAAGTCTCCAAAAAGCGATAGCTCGGAGCAAAAATGGAGCCATGAAGGTTCGGTCGTCGAGTCTCTTCCCAATGGGA
TGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGGTCAGGGTTGAAACAGTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAGAGGAAATGCAAGGGGTTTTGGGGAGAAAATGCATGGAGGTGGGAATGCAAACAGTCTCAATCCCTTCTCCGAGCTCTCAATTCCTCCATAACCCTTCCCC
TTCCAGTGGTCCGGCAAGGTTCGCTCACATGGCCAAGTCTCCAAAAAGCGATAGCTCGGAGCAAAAATGGAGCCATGAAGGTTCGGTCGTCGAGTCTCTTCCCAATGGGA
TGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGGTCAGGGTTGAAACAGTACTAA
Protein sequenceShow/hide protein sequence
MNEEEMQGVLGRKCMEVGMQTVSIPSPSSQFLHNPSPSSGPARFAHMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGSGLKQY