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Lcy01g008070 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g008070
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr01:16536272..16536855
RNA-Seq ExpressionLcy01g008070
SyntenyLcy01g008070
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC72931.1 hypothetical protein OsI_06781 [Oryza sativa Indica Group]1.7e-1133.58Show/hide
Query:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN
        G+G VLRD +G+ + A C+P+    G +  E++A   GL +V    L  +LVE+DC++++ LLN  E + + + +I  E +RL +         I R QN
Subjt:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN

Query:  VVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD
         V+ LLA RA+++   G W  G  +++L  +  D
Subjt:  VVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD

KAG2726715.1 hypothetical protein I3760_01G126500 [Carya illinoinensis]9.4e-1038.17Show/hide
Query:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN
        GLG VLRD TG VL A  +P     G   LE+ AI  GL +   M +P++LVESD L  I  L     + +L+  + ME+Q L SR V   F H+ R  N
Subjt:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN

Query:  VVADLLAQRARINGDHGSWFSGFPSWLLEAI
         VA  LA+ A        W+   P  + +A+
Subjt:  VVADLLAQRARINGDHGSWFSGFPSWLLEAI

XP_023902041.1 uncharacterized protein LOC112013897 [Quercus suber]4.7e-0931.85Show/hide
Query:  LGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQNV
        +G ++RD TGDV  A C    G   V  +E  A+  GLL+    +LP++++ESD L +++ +N  E +  L   I   +  L S     + KH++R  N 
Subjt:  LGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQNV

Query:  VADLLAQRARINGDHGSWFSGFPSWLLEAIDGDKR
         A  LAQ AR+  D   W    P  +++ +  D R
Subjt:  VADLLAQRARINGDHGSWFSGFPSWLLEAIDGDKR

XP_023916941.1 uncharacterized protein LOC112028476 [Quercus suber]4.7e-0932.35Show/hide
Query:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG
        L GLG V+RD +G ++ A  + +  P  V M+E    R  L+    + + +  VE D L +I  LN  + N TL+  I  ++Q L + +    F H +RG
Subjt:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG

Query:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD
         N++A  LAQRA +  D   W    P  L++    D
Subjt:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD

XP_030945898.1 uncharacterized protein LOC115970400 [Quercus lobata]1.2e-0934.56Show/hide
Query:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG
        L GLG VLRD  G ++ A  E +  P  V + E  A R  +L      + +++VE DCL +I  LN +    T+   +A E +RL S L    F H++R 
Subjt:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG

Query:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD
         N +A  LA+RA +  D   W    P  L     GD
Subjt:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD

TrEMBL top hitse value%identityAlignment
A0A7N2L9Q3 RNase H domain-containing protein4.6e-1033.82Show/hide
Query:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG
        L GLG VLRD  G ++ A  E +  P  V + E  A R  +L    + + +++VE DCL +I  LN +    T+   +  E +RL S L    F H++R 
Subjt:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG

Query:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD
         N +A  LA+RA ++ D   W    P  L     GD
Subjt:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD

A0A7N2LIC5 RNase H domain-containing protein9.2e-1133.82Show/hide
Query:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG
        L GLG VLRD  G+V+ A  E +  P  V + E  A R  ++    + + +++VE DCL +I  LNG+    T+   +  E +RL S L    F H++R 
Subjt:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG

Query:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD
         N +A  LA+RA ++ +   W    P  L     GD
Subjt:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD

A0A7N2LIP9 RNase H domain-containing protein7.0e-1133.09Show/hide
Query:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG
        L GLG V+RD  G+V+ A  E +  P  V + E  A R  +++   + + +++VE DCL +I  L+G+    T+   +A E +RL   L    F H++R 
Subjt:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG

Query:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD
         N +A  LA+RA ++ D   W    P  L     GD
Subjt:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD

A0A7N2N656 RNase H domain-containing protein5.4e-1134.56Show/hide
Query:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG
        L GLG VLRD  G+V+ A  E +  P  V + E  A R  ++    + + +++VE DCL +I  LNG+    T+   +  E +RL S L    F H++R 
Subjt:  LKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRG

Query:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD
         N +A  LA+RA ++ D   W    P  L     GD
Subjt:  QNVVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD

B8AFN2 RNase H domain-containing protein8.3e-1233.58Show/hide
Query:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN
        G+G VLRD +G+ + A C+P+    G +  E++A   GL +V    L  +LVE+DC++++ LLN  E + + + +I  E +RL +         I R QN
Subjt:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN

Query:  VVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD
         V+ LLA RA+++   G W  G  +++L  +  D
Subjt:  VVADLLAQRARINGDHGSWFSGFPSWLLEAIDGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-1030.47Show/hide
Query:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN
        G+GW+LR+ +G VL  G   +     V+  E++A+R  +L +      R++ ESD   ++NLLN ++   TL  ++  ++Q+L       +F+   RG N
Subjt:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN

Query:  VVADLLAQRA-RINGDHGSWFSGFPSWL
         VAD +A+ +   +      FS  P WL
Subjt:  VVADLLAQRA-RINGDHGSWFSGFPSWL

AT3G09510.1 Ribonuclease H-like superfamily protein5.7e-0524.8Show/hide
Query:  GWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQNVV
        GW++R+  G  +  G   +      +  E +A+ A L         ++ +E DC T+INL+NG   + +L   +  ++   +++    QF  I+R  N +
Subjt:  GWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQNVV

Query:  ADLLAQRARINGDHGSWFSGFPSWL
        A +LA+         S     P WL
Subjt:  ADLLAQRARINGDHGSWFSGFPSWL

AT4G29090.1 Ribonuclease H-like superfamily protein5.5e-0828.36Show/hide
Query:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN
        G+GWVLR+  G+V   G   +     V+  E++A+R  +L +   +   ++ ESD   +I +LN  +E +  ++    ++QRL S+    +F  I R  N
Subjt:  GLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQN

Query:  VVADLLAQRAR--INGDHGSWFSGFPSWLLEAID
         +A+ +A+ +   +N D    +S  PSW   ++D
Subjt:  VVADLLAQRAR--INGDHGSWFSGFPSWLLEAID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAGGGTCTGGGCTGGGTGCTGCGGGATGTTACTGGAGATGTGCTCGAGGCAGGTTGTGAACCGGTCACGGGACCCCTTGGGGTGGTTATGTTGGAAATG
CAGGCGATTCGAGCTGGATTGTTGGTTGTTGGTGGGATGAGGCTTCCTCGCCTATTGGTGGAATCAGATTGTCTGACTATTATAAATCTTTTAAATGGTGAGGAG
GAAAACTTCACCTTAGTCCGGTCAATTGCTATGGAGGTGCAGCGACTTTCTTCCCGTTTGGTGGGAACACAGTTTAAGCATATTCAGCGAGGCCAAAATGTGGTG
GCTGACTTGTTGGCGCAACGAGCAAGGATTAATGGAGATCATGGTTCTTGGTTTTCAGGTTTCCCAAGTTGGCTACTGGAAGCGATAGATGGTGACAAACGATGT
TTAAACTTATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAGGGTCTGGGCTGGGTGCTGCGGGATGTTACTGGAGATGTGCTCGAGGCAGGTTGTGAACCGGTCACGGGACCCCTTGGGGTGGTTATGTTGGAAATG
CAGGCGATTCGAGCTGGATTGTTGGTTGTTGGTGGGATGAGGCTTCCTCGCCTATTGGTGGAATCAGATTGTCTGACTATTATAAATCTTTTAAATGGTGAGGAG
GAAAACTTCACCTTAGTCCGGTCAATTGCTATGGAGGTGCAGCGACTTTCTTCCCGTTTGGTGGGAACACAGTTTAAGCATATTCAGCGAGGCCAAAATGTGGTG
GCTGACTTGTTGGCGCAACGAGCAAGGATTAATGGAGATCATGGTTCTTGGTTTTCAGGTTTCCCAAGTTGGCTACTGGAAGCGATAGATGGTGACAAACGATGT
TTAAACTTATTGTAA
Protein sequenceShow/hide protein sequence
MLKGLGWVLRDVTGDVLEAGCEPVTGPLGVVMLEMQAIRAGLLVVGGMRLPRLLVESDCLTIINLLNGEEENFTLVRSIAMEVQRLSSRLVGTQFKHIQRGQNVV
ADLLAQRARINGDHGSWFSGFPSWLLEAIDGDKRCLNLL