CuGenDBv2

Gene ID	Lcy01g009680
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	Chr01:28391199..28391768
RNA-Seq Expression	Lcy01g009680
Synteny	Lcy01g009680
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain

Homology

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GenBank top hits

e value

%identity

Alignment

CCA66036.1 hypothetical protein [Beta vulgaris subsp. vulgaris]

7.2e-42

47.16

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        MNCV S R+SVL+NG P   F P RG+RQGDPLSP+LF++CAE LS LL   E +  I G++I +    ++HLFFAD++L+F +A++EE   V  +L TY
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK
        + ASGQK+N+EK     S+N+E  ++  +   L FK  +    YLGLP   G  K  +F  +++R+WK L+GWKGK
Subjt:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK

MCH95088.1 hypothetical protein [Trifolium medium]

6.1e-41

46.02

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        M CV +V +S+L+NG P  +F P RGIRQGDPLSPYLF+LC + LS +++  + +N I+GI I N+ P ++HLFFAD++LIF KA+KEEAT +  VL+ Y
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK
         + SGQKINL+K       N+++    E   V+  + +  +  YLG+P Q G+ K  +F  + +R+W  L+GWK K
Subjt:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK

PNX95563.1 ribonuclease H, partial [Trifolium pratense]

8.0e-41

45.45

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        M CV +V++S+L+NG P +EF P RG+RQGDPLSPYLF++CA+ LS L++  + +  I GIRI+   P ++HLFFAD++L+F +A+ +E + ++ ++ TY
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK
         KASGQ +NL K   + S+ V      EIS +L  + S+    YLG+P   G+ K  +FN ++E+IWK L+GWK K
Subjt:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]

1.4e-53

56.42

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        MNCVESVR++VL+NG P +EF P RG+RQGDPLSPYLF++CAE LSAL+N EE +  I+ ++IN  CP ++HLF+AD+ L+FFKAS      +KG+L++Y
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKA-SGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGKLF
        +KA SGQ INL+K +F+ S+N +E  VG I   L    ++ LG YLGLP+Q+G+ K  +FN +K+R+WK LQGWKGKLF
Subjt:  DKA-SGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGKLF

XP_030923330.1 uncharacterized protein LOC115950239 [Quercus lobata]

2.7e-41

48.59

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        M+CV +  +S+L+NG P E  +P RGIRQGDP+SPYLFLLCAE L+ALLN  E    I+G+ I    P +T+L FAD++L+F +A++ E   +  +L  Y
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGKL
        ++ASGQ INLEK     S N  E + G+I  +LG K       YLGLP   G+ K + F++LK+R+WK LQGWKG L
Subjt:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGKL

TrEMBL top hits

e value

%identity

Alignment

A0A2K3MXM6 Ribonuclease H (Fragment)

3.8e-41

45.45

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        M CV +V++S+L+NG P +EF P RG+RQGDPLSPYLF++CA+ LS L++  + +  I GIRI+   P ++HLFFAD++L+F +A+ +E + ++ ++ TY
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK
         KASGQ +NL K   + S+ V      EIS +L  + S+    YLG+P   G+ K  +FN ++E+IWK L+GWK K
Subjt:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK

A0A2N9F9I5 Uncharacterized protein

2.9e-41

46.89

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        M CV SV YS+L+NG P+  F P RG+RQGDP+SPYLFLLCAE L+ALL        I GI I+   P LTHLFFAD++++F +A+  E   ++ +L TY
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGKL
        ++ SGQ++N +K     S +  E+   EI   LG    +   +YLGLP+  G+ K + F +LK+R+W+ +QGWKGKL
Subjt:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGKL

A0A392N7V7 Reverse transcriptase domain-containing protein (Fragment)

2.9e-41

46.02

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        M CV +V +S+L+NG P  +F P RGIRQGDPLSPYLF+LC + LS +++  + +N I+GI I N+ P ++HLFFAD++LIF KA+KEEAT +  VL+ Y
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK
         + SGQKINL+K       N+++    E   V+  + +  +  YLG+P Q G+ K  +F  + +R+W  L+GWK K
Subjt:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK

A0A6J1DUG8 uncharacterized protein LOC111024135

6.8e-54

56.42

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        MNCVESVR++VL+NG P +EF P RG+RQGDPLSPYLF++CAE LSAL+N EE +  I+ ++IN  CP ++HLF+AD+ L+FFKAS      +KG+L++Y
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKA-SGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGKLF
        +KA SGQ INL+K +F+ S+N +E  VG I   L    ++ LG YLGLP+Q+G+ K  +FN +K+R+WK LQGWKGKLF
Subjt:  DKA-SGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGKLF

F4NCI4 Reverse transcriptase domain-containing protein

3.5e-42

47.16

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Query:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY
        MNCV S R+SVL+NG P   F P RG+RQGDPLSP+LF++CAE LS LL   E +  I G++I +    ++HLFFAD++L+F +A++EE   V  +L TY
Subjt:  MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTY

Query:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK
        + ASGQK+N+EK     S+N+E  ++  +   L FK  +    YLGLP   G  K  +F  +++R+WK L+GWKGK
Subjt:  DKASGQKINLEKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGK

SwissProt top hits

e value

%identity

Alignment

P11369 LINE-1 retrotransposable element ORF2 protein

1.3e-06

27.27

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Query:  SVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTYDKASGQKIN
        ++ +NG   E      G RQG PLSPYLF +  E L+  +     Q  I GI+I      ++ L  AD+ +++    K     +  +++++ +  G KIN
Subjt:  SVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTYDKASGQKIN

Query:  LEK-FVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNK----LKERIWKVLQGWKGKLFPW
          K   F+ ++N +  +  EI     F        YLG+     K    L++K    LK+ I + L+ WK     W
Subjt:  LEK-FVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNK----LKERIWKVLQGWKGKLFPW

P92555 Uncharacterized mitochondrial protein AtMg01250

1.0e-14

52.24

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Query:  LLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADN
        ++NG+PQ    P RG+RQGDPLSPYLF+LC E LS L    + Q  + GIR++N+ P + HL FAD+
Subjt:  LLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADN

Arabidopsis top hits

e value

%identity

Alignment

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)

7.2e-16

52.24

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Query:  LLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADN
        ++NG+PQ    P RG+RQGDPLSPYLF+LC E LS L    + Q  + GIR++N+ P + HL FAD+
Subjt:  LLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADN

Sequences

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CDS sequence

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ATGAACTGTGTTGAATCGGTTAGATACTCGGTGCTTCTTAACGGGAGCCCCCAGGAAGAATTTAAGCCTCTCAGGGGAATCAGACAAGGAGACCCTCTGTCTCCATACCT
TTTCCTCCTTTGTGCAGAGGACCTGTCCGCCTTACTTAACGGGGAAGAGTTTCAAAACTATATTTCTGGTATTCGCATTAATAATCACTGCCCTACTCTTACTCACCTAT
TTTTTGCAGATAACAACTTAATTTTCTTCAAGGCCTCCAAGGAAGAAGCAACCAGAGTCAAAGGGGTGTTGGACACTTATGACAAGGCATCGGGCCAGAAGATAAACCTA
GAGAAATTTGTCTTCATGACGAGCCAAAATGTGGAAGAGAGCAGGGTCGGGGAGATTAGCACGGTCCTGGGGTTTAAGAGGTCCAAGTGCCTTGGCCATTACCTAGGCCT
CCCAGCGCAGTCGGGAAAAAGAAAGTCCTCCCTCTTCAATAAGCTTAAGGAAAGAATCTGGAAAGTGCTTCAAGGGTGGAAAGGGAAGCTTTTTCCATGGGAGGCAAAGA
GGTCCTCATTAAATCTATAA

mRNA sequence

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Protein sequence

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MNCVESVRYSVLLNGSPQEEFKPLRGIRQGDPLSPYLFLLCAEDLSALLNGEEFQNYISGIRINNHCPTLTHLFFADNNLIFFKASKEEATRVKGVLDTYDKASGQKINL
EKFVFMTSQNVEESRVGEISTVLGFKRSKCLGHYLGLPAQSGKRKSSLFNKLKERIWKVLQGWKGKLFPWEAKRSSLNL

Lcy01g009680 (gene) of Sponge gourd (P93075) v1 genome