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Lcy01g010140 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g010140
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr01:29238678..29239517
RNA-Seq ExpressionLcy01g010140
SyntenyLcy01g010140
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015383853.1 uncharacterized protein LOC107176237 [Citrus sinensis]2.5e-1930.45Show/hide
Query:  DLGKIAVTCWTIWSDKKKF-NHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALC
        D+  +   CWTIW  K KF   G+ + P+   S+ ++  +++Y R        ++ L+   TS+S +   WSPPPD  +K+N DAA +      GL  + 
Subjt:  DLGKIAVTCWTIWSDKKKF-NHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALC

Query:  RDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGI
        RD   ++ VA+     F  +   AE +A+  GL +A       + VESD +  +K I  K  + ++V  ++  I  +   F++ S   TPR+CN  AH +
Subjt:  RDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGI

Query:  ARMTKIMRCNET--WVDRFP
        A++   +R NET  W++  P
Subjt:  ARMTKIMRCNET--WVDRFP

XP_015385737.1 uncharacterized protein LOC107177033 [Citrus sinensis]3.9e-2030Show/hide
Query:  DLGKIAVTCWTIWSDKKKF-NHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALC
        D+  +   CWTIW  K KF   G+ + P+   S+ ++  +++Y R        ++ L+   TS+S +   WSPPPD  +K+N DAA +      GL  + 
Subjt:  DLGKIAVTCWTIWSDKKKF-NHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALC

Query:  RDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGI
        RD   ++ VA+     F  +   AE +A+  GL +A       + VESD +  +K I     + +++  ++  I  +   F++IS+  TPR+CN  AH +
Subjt:  RDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGI

Query:  ARMTKIMRCNET--WVDRFP
        A++   +R NET  W++  P
Subjt:  ARMTKIMRCNET--WVDRFP

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.1e-2733.47Show/hide
Query:  WIKIDLHSFTEDLGKIAVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKN-SPNEVDLQQLGTSTSISPAC--WSPPPDGFWKLNTDAAC
        W  +      +DL   A+T W IW+D+    HG+ + P+  K + +  +LDS+ +A   N SP         T ++  P    W P      KLNTDAAC
Subjt:  WIKIDLHSFTEDLGKIAVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKN-SPNEVDLQQLGTSTSISPAC--WSPPPDGFWKLNTDAAC

Query:  SDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFK
          +  +T    + RD    ++ A+S+ + FP+   +AE++ I EGLK A+    ++L+VESDS LAI+ I  +     D +  V  I  +   F  ISF 
Subjt:  SDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFK

Query:  FTPRNCNKAAHGIARM-TKIMRCNETWVDRFPSWLCTKV--DFDRSFLAHV
         + R CN+AAHG+A+           W+  FP+WL   V  DF  +F AHV
Subjt:  FTPRNCNKAAHGIARM-TKIMRCNETWVDRFPSWLCTKV--DFDRSFLAHV

XP_030942039.1 uncharacterized protein LOC115967096 [Quercus lobata]1.5e-1927.85Show/hide
Query:  FTEDLGKIAVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSK---NSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATG
        F E+     +TCW IW  +    HG      +  ++   DYL  Y  A        PN   +QQ           W PPP+ F+KLN D AC D   A+G
Subjt:  FTEDLGKIAVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSK---NSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATG

Query:  LVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNK
          A+ R++ GE++ A +       ++   E+ A  + L+ A   G + + +E D+ L +K I++     S +  + E IW +   FR IS+    R+ N 
Subjt:  LVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNK

Query:  AAHGIARMTKIMRCNETWVDRFPSWLCTKVDFDRSFL
         AH +AR  +++     W++  P      +  D S L
Subjt:  AAHGIARMTKIMRCNETWVDRFPSWLCTKVDFDRSFL

XP_030958792.1 uncharacterized protein LOC115980708 [Quercus lobata]2.7e-2129.33Show/hide
Query:  VTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEI
        +TCW IW  +    HG      +  ++   DYL  Y  A      + V +  LG         W PPP+ F+KLN D+AC D   A+G  A+ R++ G+I
Subjt:  VTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEI

Query:  IVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIM
        + A +V      ++   E+ A  + L+ A  +G + + +E D+ L +K IT+     S +  + E IW +   FR IS+    R+ N  AH +AR  +++
Subjt:  IVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIM

Query:  RCNETWVDRFPSWLCTKVDFDRSFL
             W++  P      +  D SFL
Subjt:  RCNETWVDRFPSWLCTKVDFDRSFL

TrEMBL top hitse value%identityAlignment
A0A0Q3GGJ7 RNase H domain-containing protein3.6e-1931.48Show/hide
Query:  AVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGE
        AV CW IW ++++  HGEPIPP    +  I+  + +Y R+ SK S     +Q+LG         W  PP+G  KLN DA+  +        A+ RD  G 
Subjt:  AVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGE

Query:  IIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAW-SDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTK
         + AS+  +    +A MAE  A++ G++ A  LGCS L + SDS   ++ +    ++W S   A+       L  F  +  +  P   N+ AH +AR+ +
Subjt:  IIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAW-SDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTK

Query:  IMRCNETWVDRFPSWL
            N  W+D  P++L
Subjt:  IMRCNETWVDRFPSWL

A0A6J1DX30 uncharacterized protein LOC1110248745.5e-2833.47Show/hide
Query:  WIKIDLHSFTEDLGKIAVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKN-SPNEVDLQQLGTSTSISPAC--WSPPPDGFWKLNTDAAC
        W  +      +DL   A+T W IW+D+    HG+ + P+  K + +  +LDS+ +A   N SP         T ++  P    W P      KLNTDAAC
Subjt:  WIKIDLHSFTEDLGKIAVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKN-SPNEVDLQQLGTSTSISPAC--WSPPPDGFWKLNTDAAC

Query:  SDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFK
          +  +T    + RD    ++ A+S+ + FP+   +AE++ I EGLK A+    ++L+VESDS LAI+ I  +     D +  V  I  +   F  ISF 
Subjt:  SDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFK

Query:  FTPRNCNKAAHGIARM-TKIMRCNETWVDRFPSWLCTKV--DFDRSFLAHV
         + R CN+AAHG+A+           W+  FP+WL   V  DF  +F AHV
Subjt:  FTPRNCNKAAHGIARM-TKIMRCNETWVDRFPSWLCTKV--DFDRSFLAHV

A0A6P5S7Q3 uncharacterized protein LOC1107532616.1e-1929.6Show/hide
Query:  CWTIWSDKKK-FNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEII
        CW +W ++ K    G       I ++ I  +L   + +  K  P  +            P+ WSPPP G +KLN DAA       +G+ A+ R+  GE++
Subjt:  CWTIWSDKKK-FNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEII

Query:  VASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITK-KFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIM
         A ++ L     +  AE+ A+  G+  A   G S   +ESDS+  +  + K + E+W+    L++ I   L HF +++  F+PR CN+ AH +AR    +
Subjt:  VASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITK-KFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIM

Query:  RCNE--TWVDRFPSWLCTKVDFD
         C+   TW++  P WL + V+ D
Subjt:  RCNE--TWVDRFPSWLCTKVDFD

A0A7N2RE64 RNase H domain-containing protein4.2e-2027.44Show/hide
Query:  EDLGKIAVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALC
        ED+G +  T W IW+++ +  HG+   P ++     K+ L+++  A+    P +  ++          A W PP   ++K NT+ A       TG+  + 
Subjt:  EDLGKIAVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALC

Query:  RDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGI
        RD  GE++ A S  +  P+ A   E KA+ EG++ A  +G      ESDS   +  + ++ E  S +  ++      L  FR+++F    R+ NKAAH +
Subjt:  RDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEALVESIWGMLPHFRDISFKFTPRNCNKAAHGI

Query:  ARMTKIMRCNETWVD
        A+  K +     WV+
Subjt:  ARMTKIMRCNETWVD

A0A803NM27 Uncharacterized protein3.6e-1928.63Show/hide
Query:  NSRLSISKKINKWIKIDLHSFTE-DLGKIAVTCWTIWSDKKKFNHGE-PIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPA-------
        N++ ++S KI  ++      +T+ +L  I  T W+IWSD+    HG+ P  P  I +K    +L S+  A           QQL     ++PA       
Subjt:  NSRLSISKKINKWIKIDLHSFTE-DLGKIAVTCWTIWSDKKKFNHGE-PIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGTSTSISPA-------

Query:  CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEA
         W+PPP    KLN DAA  D+    G  A+ RD  G +  A S  +D        E K +F  LK A  L      VE+DS + +  + K     S  + 
Subjt:  CWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDVEA

Query:  LVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPSWLCTKVDFDRSF
        L+  +   L +   +      R+ N+AAHG+A+   ++    TW++ FPS + + +  D  F
Subjt:  LVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPSWLCTKVDFDRSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATACAATCACCAAATATATGTTTTTAATTCATGGGTTGCCCGATATTTTTTTATATATAAATTCAAGACTTTCTATTTCTAAAAAGATAAATAAGTGGATT
AAGATCGATTTGCACTCTTTCACTGAGGATCTCGGAAAGATAGCGGTTACTTGCTGGACAATTTGGAGCGACAAGAAAAAATTTAACCACGGGGAACCAATCCCT
CCTATCGCTATTAAAAGCAAATTGATCAAAGATTACCTCGACTCCTATTGGCGTGCAAGCTCTAAGAATTCCCCAAACGAGGTGGATCTGCAACAATTGGGAACT
TCCACTTCGATTTCGCCTGCATGTTGGTCTCCACCCCCAGATGGTTTTTGGAAGCTAAATACCGATGCTGCTTGCTCTGATTCTCCTCCAGCGACTGGATTGGTT
GCTTTGTGTAGAGATAAGGGTGGAGAAATTATAGTTGCTTCCTCTGTTTTCCTTGATTTTCCCATGGAAGCTCATATGGCGGAACTAAAAGCGATATTCGAAGGA
TTGAAAATGGCAAGTTTTTTAGGTTGTTCATACCTTAAGGTGGAATCAGATAGTGAGCTGGCAATAAAATTCATTACAAAGAAATTTGAGGCCTGGAGTGATGTG
GAAGCCCTAGTGGAATCTATCTGGGGAATGTTGCCACATTTCAGGGATATTTCTTTTAAATTTACTCCTAGAAATTGTAATAAGGCAGCCCATGGTATAGCTAGA
ATGACAAAAATTATGAGATGTAATGAAACTTGGGTTGATCGATTCCCAAGTTGGTTGTGTACTAAGGTCGACTTCGACCGATCTTTCCTTGCCCATGTGGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATACAATCACCAAATATATGTTTTTAATTCATGGGTTGCCCGATATTTTTTTATATATAAATTCAAGACTTTCTATTTCTAAAAAGATAAATAAGTGGATT
AAGATCGATTTGCACTCTTTCACTGAGGATCTCGGAAAGATAGCGGTTACTTGCTGGACAATTTGGAGCGACAAGAAAAAATTTAACCACGGGGAACCAATCCCT
CCTATCGCTATTAAAAGCAAATTGATCAAAGATTACCTCGACTCCTATTGGCGTGCAAGCTCTAAGAATTCCCCAAACGAGGTGGATCTGCAACAATTGGGAACT
TCCACTTCGATTTCGCCTGCATGTTGGTCTCCACCCCCAGATGGTTTTTGGAAGCTAAATACCGATGCTGCTTGCTCTGATTCTCCTCCAGCGACTGGATTGGTT
GCTTTGTGTAGAGATAAGGGTGGAGAAATTATAGTTGCTTCCTCTGTTTTCCTTGATTTTCCCATGGAAGCTCATATGGCGGAACTAAAAGCGATATTCGAAGGA
TTGAAAATGGCAAGTTTTTTAGGTTGTTCATACCTTAAGGTGGAATCAGATAGTGAGCTGGCAATAAAATTCATTACAAAGAAATTTGAGGCCTGGAGTGATGTG
GAAGCCCTAGTGGAATCTATCTGGGGAATGTTGCCACATTTCAGGGATATTTCTTTTAAATTTACTCCTAGAAATTGTAATAAGGCAGCCCATGGTATAGCTAGA
ATGACAAAAATTATGAGATGTAATGAAACTTGGGTTGATCGATTCCCAAGTTGGTTGTGTACTAAGGTCGACTTCGACCGATCTTTCCTTGCCCATGTGGTGTAA
Protein sequenceShow/hide protein sequence
MHTITKYMFLIHGLPDIFLYINSRLSISKKINKWIKIDLHSFTEDLGKIAVTCWTIWSDKKKFNHGEPIPPIAIKSKLIKDYLDSYWRASSKNSPNEVDLQQLGT
STSISPACWSPPPDGFWKLNTDAACSDSPPATGLVALCRDKGGEIIVASSVFLDFPMEAHMAELKAIFEGLKMASFLGCSYLKVESDSELAIKFITKKFEAWSDV
EALVESIWGMLPHFRDISFKFTPRNCNKAAHGIARMTKIMRCNETWVDRFPSWLCTKVDFDRSFLAHVV