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Lcy01g010160 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g010160
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr01:29262765..29263968
RNA-Seq ExpressionLcy01g010160
SyntenyLcy01g010160
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]8.2e-0938.24Show/hide
Query:  LKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEG-----LIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLID
        L S ASW+E+ G+GG  WV+HD  GS +C+  K++ + W +KMLE KAM+EG     LI+   +   R I        LE+  IL     DL ++ +++D
Subjt:  LKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEG-----LIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLID

Query:  QI
        +I
Subjt:  QI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.8e-0830.22Show/hide
Query:  KNPTPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCKRRSIAIEAQTNALEIINILTRKLEDLSKV
        K PT N W L ++A+W      GG GW++ D +G ++    + I     I  LE  A+ EGL  I  + C+     I  ++++LE I++L R+ +D +++
Subjt:  KNPTPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCKRRSIAIEAQTNALEIINILTRKLEDLSKV

Query:  KSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD
          L+++I  +  D+  V   H +R  N  AH + R A++
Subjt:  KSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.4e-1326.02Show/hide
Query:  MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPTP-NCWHLKSDASWNEKLGRGGGGW
        M D  + E+L    +    IWN++N V    +        Q +   +   E SY        +    +   +  P P + W L +DASW++   RGG GW
Subjt:  MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPTP-NCWHLKSDASWNEKLGRGGGGW

Query:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT
        ++   +G +V  G + +     +K+LEA A+LEGL  + +    R + IE  T++ E+ ++L RK EDL+K   ++++I  +      + F+   R  N 
Subjt:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT

Query:  DAHCVERTAVDFPVNVGDLHGSSYSQEKGQVFWAPNLPSWLFPLFK
         AH + + A               S  +  + W    P+WL  L K
Subjt:  DAHCVERTAVDFPVNVGDLHGSSYSQEKGQVFWAPNLPSWLFPLFK

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.8e-0830.52Show/hide
Query:  RIGSQASQAPRKNPTPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCK----RRSIAIEAQTNALE
        RIG     A  K PT N W L +DA+W      GG GW++ D +G ++    + I     I  LE  A+ EGL  I  + C+         I  ++++LE
Subjt:  RIGSQASQAPRKNPTPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCK----RRSIAIEAQTNALE

Query:  IINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD
         I++L R+ +D +++  L+++I  +  D+  V   H +R  N  AH + R A++
Subjt:  IINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]2.6e-0727.72Show/hide
Query:  ELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPT--------PNCWHLKSDASWNEKLGRGGGGWV
        ++ K  V++ ++W  +N V    +   AEA     D  ++ + VS    +  DR G +    P + PT        P  W L  DASWN K+   G GWV
Subjt:  ELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPT--------PNCWHLKSDASWNEKLGRGGGGWV

Query:  VHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTD
          D    +   G+K + +   + +LEA A+  GL +I+ +    +I +E+     E+IN+L   + DLS+V    ++      ++  + FSH  R  N  
Subjt:  VHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTD

Query:  AH
        A+
Subjt:  AH

TrEMBL top hitse value%identityAlignment
A0A0K9QAP7 RNase H domain-containing protein (Fragment)2.2e-0725.5Show/hide
Query:  NGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKN------PTPNCWHLKSDASWNEKLGRGGGGW
        N E++   AVI+  IW  +N V +                 ++  + +  K + +  IG Q +Q+ ++       P      + +DA+    LG  G G 
Subjt:  NGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKN------PTPNCWHLKSDASWNEKLGRGGGGW

Query:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT
        V+ D EGS   V   Q+  +W +++ EAKA++ GL Q+ + C  R+I +E   N+L II  L     D S +  ++ ++  ++   H V FSH  R  N 
Subjt:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT

Query:  DAHCVER-TAVDFPVNVGDLHGSSYSQEKGQVFWAPNLPSWLFPLFKEDRC
         AH +   T V++ V +                WA ++P+ +  +   D C
Subjt:  DAHCVER-TAVDFPVNVGDLHGSSYSQEKGQVFWAPNLPSWLFPLFKEDRC

A0A6J1CP26 uncharacterized protein LOC1110134128.8e-0930.22Show/hide
Query:  KNPTPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCKRRSIAIEAQTNALEIINILTRKLEDLSKV
        K PT N W L ++A+W      GG GW++ D +G ++    + I     I  LE  A+ EGL  I  + C+     I  ++++LE I++L R+ +D +++
Subjt:  KNPTPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCKRRSIAIEAQTNALEIINILTRKLEDLSKV

Query:  KSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD
          L+++I  +  D+  V   H +R  N  AH + R A++
Subjt:  KSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD

A0A6J1CQG0 uncharacterized protein LOC1110132161.8e-0626.55Show/hide
Query:  LNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPR------------KNPTPNCWHLKSDASWNEKL
        L+ EE+A   VI  +IW  +N      +    +   +SI   I            + R        PR              P  NCW L +DASW+E+ 
Subjt:  LNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPR------------KNPTPNCWHLKSDASWNEKL

Query:  GRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLS
          GG GW++ D  G +V  G  +I +   I  LE   ++ GL Q ++   R  I +E  ++++E+I ++ ++  DL+
Subjt:  GRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLS

A0A6J1DNV9 uncharacterized protein LOC1110224037.0e-1426.02Show/hide
Query:  MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPTP-NCWHLKSDASWNEKLGRGGGGW
        M D  + E+L    +    IWN++N V    +        Q +   +   E SY        +    +   +  P P + W L +DASW++   RGG GW
Subjt:  MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPTP-NCWHLKSDASWNEKLGRGGGGW

Query:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT
        ++   +G +V  G + +     +K+LEA A+LEGL  + +    R + IE  T++ E+ ++L RK EDL+K   ++++I  +      + F+   R  N 
Subjt:  VVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNT

Query:  DAHCVERTAVDFPVNVGDLHGSSYSQEKGQVFWAPNLPSWLFPLFK
         AH + + A               S  +  + W    P+WL  L K
Subjt:  DAHCVERTAVDFPVNVGDLHGSSYSQEKGQVFWAPNLPSWLFPLFK

A0A6J1DSV1 uncharacterized protein LOC1110236088.8e-0930.52Show/hide
Query:  RIGSQASQAPRKNPTPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCK----RRSIAIEAQTNALE
        RIG     A  K PT N W L +DA+W      GG GW++ D +G ++    + I     I  LE  A+ EGL  I  + C+         I  ++++LE
Subjt:  RIGSQASQAPRKNPTPNCWHLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMKQITKNWPIKMLEAKAMLEGLIQI-VDTCK----RRSIAIEAQTNALE

Query:  IINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD
         I++L R+ +D +++  L+++I  +  D+  V   H +R  N  AH + R A++
Subjt:  IINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.5e-0520.11Show/hide
Query:  IMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPTPNCW-HLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMK
        ++ ++W  +N +    + F A+   +  +  ++E  +         +     S   R  P P+ W    +DA+WN    R G GWV+ + +G +  +G +
Subjt:  IMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPTPNCW-HLKSDASWNEKLGRGGGGWVVHDLEGSLVCVGMK

Query:  QITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNAL-EIIN------ILTRKLEDLSKVKSLIDQISFI
         + K   +   E +AM   ++ +    +   +  E+ +  L EI+N       L   ++DL ++ S   ++ F+
Subjt:  QITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNAL-EIIN------ILTRKLEDLSKVKSLIDQISFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGACAACTTGAATGGTGAGGAACTTGCTAAAGGAGCAGTCATAATGCGGAAAATTTGGAACTACCAAAACGGTGTAGCAATCAACAACCAGAGATTTGGA
GCAGAAGCCTTCTACCAAAGCATCGATTTCAGTATTAAGGAGTTGGAAGTTTCTTACCTCAAGACCCAACCCTCCGACAGAATTGGGAGCCAAGCGAGTCAAGCT
CCAAGAAAGAACCCGACCCCAAATTGCTGGCATTTAAAGTCCGACGCGTCCTGGAATGAGAAGCTCGGCAGAGGAGGAGGGGGATGGGTGGTGCATGACTTGGAG
GGATCCCTTGTCTGCGTCGGAATGAAGCAAATTACAAAGAATTGGCCAATCAAGATGTTGGAAGCAAAAGCCATGTTAGAGGGGTTAATCCAAATTGTTGATACC
TGCAAGCGTCGCTCCATCGCCATTGAAGCGCAGACGAATGCCCTGGAGATTATTAACATCCTCACCAGAAAACTGGAGGATTTATCAAAGGTGAAATCTCTCATC
GACCAGATCAGTTTCATTGCCTTGGATGTGCACGATGTGGGTTTTAGTCATTATAATAGGGTTTTGAACACAGACGCGCACTGTGTTGAGAGAACAGCCGTGGAT
TTCCCAGTCAATGTTGGCGATCTCCATGGAAGCAGTTATTCGCAGGAGAAGGGGCAAGTTTTTTGGGCTCCAAATTTGCCATCTTGGTTATTTCCCCTCTTTAAG
GAGGATAGGTGTAATGACAGTTAA
mRNA sequenceShow/hide mRNA sequence
GTTCAATATAGATTTGAAATAATTTTGTAATTCTCTATCTAATATTGTACTGTACATCTCCCAATAACTTATCCAGAAGGGGGAGTGTTTTCAATAATAAATGTT
GTTTTCAGACAAGGAAAGAAAAGAAATGGAAAATGGCAAGGGTCCAAGGATTAAATGCGAGAAGGATTGAGGTACAAATGAAATGACCCTACAAAACAACCACCC
ACCTAATCTGGGAGTGTAAAATTTCAAGAGAGGGATGTGTTAGAGTTATCCCTAAAACTTATAATTTGTTTCTATATTCTGGTCGAATTGGACCACAAAGGGCTG
GTGGAGTTGGATGAAGGACAACTTGAATGGTGAGGAACTTGCTAAAGGAGCAGTCATAATGCGGAAAATTTGGAACTACCAAAACGGTGTAGCAATCAACAACCA
GAGATTTGGAGCAGAAGCCTTCTACCAAAGCATCGATTTCAGTATTAAGGAGTTGGAAGTTTCTTACCTCAAGACCCAACCCTCCGACAGAATTGGGAGCCAAGC
GAGTCAAGCTCCAAGAAAGAACCCGACCCCAAATTGCTGGCATTTAAAGTCCGACGCGTCCTGGAATGAGAAGCTCGGCAGAGGAGGAGGGGGATGGGTGGTGCA
TGACTTGGAGGGATCCCTTGTCTGCGTCGGAATGAAGCAAATTACAAAGAATTGGCCAATCAAGATGTTGGAAGCAAAAGCCATGTTAGAGGGGTTAATCCAAAT
TGTTGATACCTGCAAGCGTCGCTCCATCGCCATTGAAGCGCAGACGAATGCCCTGGAGATTATTAACATCCTCACCAGAAAACTGGAGGATTTATCAAAGGTGAA
ATCTCTCATCGACCAGATCAGTTTCATTGCCTTGGATGTGCACGATGTGGGTTTTAGTCATTATAATAGGGTTTTGAACACAGACGCGCACTGTGTTGAGAGAAC
AGCCGTGGATTTCCCAGTCAATGTTGGCGATCTCCATGGAAGCAGTTATTCGCAGGAGAAGGGGCAAGTTTTTTGGGCTCCAAATTTGCCATCTTGGTTATTTCC
CCTCTTTAAGGAGGATAGGTGTAATGACAGTTAATCTTTTTCAATGCATTTACTTATCTTCAAAAAAGAAAAAAAAATGAAAGGGAAAAATACACTTTTAGTCCC
TGAGGTTTGGGTTAGGTTTCATTTTGGTCATTGAGTTTTCAAACTCAAC
Protein sequenceShow/hide protein sequence
MKDNLNGEELAKGAVIMRKIWNYQNGVAINNQRFGAEAFYQSIDFSIKELEVSYLKTQPSDRIGSQASQAPRKNPTPNCWHLKSDASWNEKLGRGGGGWVVHDLE
GSLVCVGMKQITKNWPIKMLEAKAMLEGLIQIVDTCKRRSIAIEAQTNALEIINILTRKLEDLSKVKSLIDQISFIALDVHDVGFSHYNRVLNTDAHCVERTAVD
FPVNVGDLHGSSYSQEKGQVFWAPNLPSWLFPLFKEDRCNDS