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Lcy01g010190 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g010190
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr01:29360460..29360996
RNA-Seq ExpressionLcy01g010190
SyntenyLcy01g010190
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]4.4e-5760.23Show/hide
Query:  DKVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYP
        D VISPTQ+AFVP R I+DN I+GFECI+ + N+R GK G +AMK+DM+KAYDRVEW +L+ +M KMGFA  W+D ++NCV+SV F VLING P +EF P
Subjt:  DKVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYP

Query:  TRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIK
         RGLRQGDPLSPYLF++CAEGLSA++  EE +  +  LKIN  CP ++HLF+ADD ++  +A   +CR+IK
Subjt:  TRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIK

XP_023909336.1 uncharacterized protein LOC112020997 [Quercus suber]7.2e-5253.25Show/hide
Query:  KVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPT
        K+IS +Q+AF+ NRLI+DN+++ FE +HHL N+RKGK G++A+K+DM+KAYDRVEW FL+ +M K+GFA  WID + +C+ +VSF +LING P    +P 
Subjt:  KVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPT

Query:  RGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI
        RGLRQGDPLSPYLFLLCAEGL A++ +  +   + G+ +    P +THL FADDS+++C+A   +C ++
Subjt:  RGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI

XP_030939568.1 uncharacterized protein LOC115964386 [Quercus lobata]2.5e-5255.62Show/hide
Query:  KVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPT
        K++  +Q+AF+ NRLISDN+++ FE +HH+ N+RKGK GF+A+K+DM+KAYDRVEW+FL+K+M K+GF   WI  + +C+++VSF VLING P   F P 
Subjt:  KVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPT

Query:  RGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI
        RGLRQGDPLSPYLFLLCAEGL +++ + E    L+G+ +    P ++HLFFADDS++ CRA ++D  TI
Subjt:  RGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI

XP_034218997.1 uncharacterized protein LOC117630370 [Prunus dulcis]2.0e-5457.31Show/hide
Query:  DKVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYP
        DK+ISP+Q+AF+  RLISDN IL  E IH+L  RR+GK GF+A+KMDM+KAYDR+EW FL+ +M K+GFAE WI  +L C+ +VS+  +ING P    +P
Subjt:  DKVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYP

Query:  TRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIK
        +RGLRQGDPLSPYLFLLCAEGL+A++ ++E + FL+G+ I    P+++HLFFADDS +  RA   DC  +K
Subjt:  TRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIK

XP_039834390.1 uncharacterized protein LOC120695147 [Panicum virgatum]1.2e-5153.8Show/hide
Query:  KVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPT
        ++ISP+Q+AFVP RLI+DNV+L +E  H+L+ RR GK G  A+K+DM+KAYDRVEW FL+K+M K+GFA  W+++V+ CV +VS+ + +NG    + YP 
Subjt:  KVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPT

Query:  RGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIKK
        RGLRQG+PLSPYLF+LCAEGLSA+L + E Q  ++G+++    P + HLFFADDS+I+ RA + D + +K+
Subjt:  RGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIKK

TrEMBL top hitse value%identityAlignment
A0A2N9F4S2 Reverse transcriptase domain-containing protein4.4e-5560.12Show/hide
Query:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR
        VIS TQ+AFVP RLISDN+++ F+ +H++   R+G++G++A+K+DM+KAYDRVEW+FL+K+M  MGF + W+  ++ CVQSVSF VLING PK  F P+R
Subjt:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR

Query:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI
        GLRQGDPLSPYLFLLCAEGL A+L R      LQG+ I+   P LTHLFFADDS++ CRA   +C TI
Subjt:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI

A0A2N9F5W1 Reverse transcriptase domain-containing protein5.8e-5555.62Show/hide
Query:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR
        +IS +Q+AFVP RLISDN+++ FE +HH+ + +  K+G++A+K+DM+KAYDRVEW+FL+++M KMGF+E+W+  ++ CV++VS+ VLING PK  F PTR
Subjt:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR

Query:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIK
        GLRQGDP+SPYLFLLCAEGL+A+L +      +QG+ I+   P L+HLFFADDS++ CRA  ++C  I+
Subjt:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIK

A0A2N9G5I8 Reverse transcriptase domain-containing protein2.2e-5456.55Show/hide
Query:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR
        +IS TQ+AFVP RLI+DN+++ FE +HH+  R  GK GF+A+K+DM+KAYDRVEW+FLK VM KMGF   W+  ++ C+ SVS+ +LING P+    PTR
Subjt:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR

Query:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI
        GLRQGDPLSPYLFLLCAEGL  +L +  +   ++G+ ++   P LTHLFFADDS++ CRA  E+C T+
Subjt:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI

A0A2N9GLU2 Reverse transcriptase domain-containing protein1.5e-5560.12Show/hide
Query:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR
        VIS TQ+AFVP RLISDN+++ FE +HH+   R+G++G++A+K+DM+KAYDRVEW+FL+K+M  MGF + W+  ++ CV+SVS+ VLING PK  F+P+R
Subjt:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR

Query:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI
        GLRQGDP+SPYLFLLCAEGL A+L R      LQGL I+   P LTHLFFADDS++ CRA   +C TI
Subjt:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTI

A0A6J1DUG8 uncharacterized protein LOC1110241352.1e-5760.23Show/hide
Query:  DKVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYP
        D VISPTQ+AFVP R I+DN I+GFECI+ + N+R GK G +AMK+DM+KAYDRVEW +L+ +M KMGFA  W+D ++NCV+SV F VLING P +EF P
Subjt:  DKVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYP

Query:  TRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIK
         RGLRQGDPLSPYLF++CAEGLSA++  EE +  +  LKIN  CP ++HLF+ADD ++  +A   +CR+IK
Subjt:  TRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIK

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein1.9e-1027.56Show/hide
Query:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR
        +I P Q  F+P      N+      IH+++  +   K  + + +D  KA+D+++  F+ KV+ + G    +++ +          + +NG   E      
Subjt:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR

Query:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSII
        G RQG PLSPYLF +  E L A  IR++ +  ++G++I      ++ L  ADD I+
Subjt:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSII

P16423 Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM3.5e-0928.1Show/hide
Query:  PTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTRGLR
        P Q  F+P    +DN  +    + H     K  +      +D++KA+D +    +   +   G  + ++D V N  +     +  +G   EEF P RG++
Subjt:  PTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTRGLR

Query:  QGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSII
        QGDPLSP LF L  + L   L  E       G K+ N   +     FADD ++
Subjt:  QGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSII

P92555 Uncharacterized mitochondrial protein AtMg012508.7e-1652.94Show/hide
Query:  LINGCPKEEFYPTRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDS
        +ING P+    P+RGLRQGDPLSPYLF+LC E LS +  R + Q  L G++++N+ P + HL FADD+
Subjt:  LINGCPKEEFYPTRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDS

Q03278 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)1.2e-0424.07Show/hide
Query:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR
        ++   Q AF+    +++N  L    I      R   KG     +D+ KA+D VE   +   + +        + ++   ++   ++ +         P R
Subjt:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTR

Query:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEE
        G+RQGDPLSP LF    + +   L   E+  FL G +       +  L FADD +++    E
Subjt:  GLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEE

Q05118 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)1.7e-0825.95Show/hide
Query:  HHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTRGLRQGDPLSPYLFLLCAEGLSAMLIR
        H++  RR   K +  + +D+ KA+D V    + + M   G  +   D +++ +      +++ G    + Y   G++QGDPLSP LF +  + L   L  
Subjt:  HHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYPTRGLRQGDPLSPYLFLLCAEGLSAMLIR

Query:  EESQNFLQGLKINNHCPSLTHLFFADDSIIM
        E+      G  +   C  +  L FADD +++
Subjt:  EESQNFLQGLKINNHCPSLTHLFFADDSIIM

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases6.4e-1438.67Show/hide
Query:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKV
        +I P QA+F+P R+ +DN++   E +H +  R+KG KG++ +K+D+ KAYDR+ W +L+  +   GF E W+ ++
Subjt:  VISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKV

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)6.2e-1752.94Show/hide
Query:  LINGCPKEEFYPTRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDS
        +ING P+    P+RGLRQGDPLSPYLF+LC E LS +  R + Q  L G++++N+ P + HL FADD+
Subjt:  LINGCPKEEFYPTRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTGAGAAATGACAAAGTAATATCACCAACCCAAGCGGCGTTTGTCCCCAACAGACTGATTTCAGACAATGTTATATTAGGATTTGAGTGCATTCACCAT
CTTAGCAACAGGAGAAAAGGCAAGAAAGGGTTTTTGGCGATGAAGATGGATATGAATAAAGCCTACGACAGAGTTGAATGGATTTTTCTAAAAAAGGTGATGGCT
AAGATGGGGTTTGCAGAAGCTTGGATTGACAAGGTCCTCAACTGTGTTCAATCAGTATCTTTTAAAGTCCTTATCAACGGTTGTCCAAAAGAGGAATTTTATCCT
ACAAGAGGACTCAGACAAGGAGATCCCCTATCTCCTTACCTGTTTCTTTTGTGTGCGGAAGGTCTATCGGCAATGCTGATCAGGGAAGAATCTCAAAACTTTCTA
CAAGGTTTAAAAATCAATAATCACTGTCCATCTCTAACCCATCTTTTTTTCGCAGATGACAGCATAATCATGTGCAGAGCCGAGGAAGAGGATTGCAGAACCATA
AAAAAGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGTGAGAAATGACAAAGTAATATCACCAACCCAAGCGGCGTTTGTCCCCAACAGACTGATTTCAGACAATGTTATATTAGGATTTGAGTGCATTCACCAT
CTTAGCAACAGGAGAAAAGGCAAGAAAGGGTTTTTGGCGATGAAGATGGATATGAATAAAGCCTACGACAGAGTTGAATGGATTTTTCTAAAAAAGGTGATGGCT
AAGATGGGGTTTGCAGAAGCTTGGATTGACAAGGTCCTCAACTGTGTTCAATCAGTATCTTTTAAAGTCCTTATCAACGGTTGTCCAAAAGAGGAATTTTATCCT
ACAAGAGGACTCAGACAAGGAGATCCCCTATCTCCTTACCTGTTTCTTTTGTGTGCGGAAGGTCTATCGGCAATGCTGATCAGGGAAGAATCTCAAAACTTTCTA
CAAGGTTTAAAAATCAATAATCACTGTCCATCTCTAACCCATCTTTTTTTCGCAGATGACAGCATAATCATGTGCAGAGCCGAGGAAGAGGATTGCAGAACCATA
AAAAAGTTCTGA
Protein sequenceShow/hide protein sequence
MTVRNDKVISPTQAAFVPNRLISDNVILGFECIHHLSNRRKGKKGFLAMKMDMNKAYDRVEWIFLKKVMAKMGFAEAWIDKVLNCVQSVSFKVLINGCPKEEFYP
TRGLRQGDPLSPYLFLLCAEGLSAMLIREESQNFLQGLKINNHCPSLTHLFFADDSIIMCRAEEEDCRTIKKF