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Lcy01g010830 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g010830
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr01:31092662..31093369
RNA-Seq ExpressionLcy01g010830
SyntenyLcy01g010830
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021807757.1 uncharacterized protein LOC110751579 [Prunus avium]3.3e-2031.84Show/hide
Query:  ITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNGDIKG
        + SW IWLD+N  +HG+             D L +   +        +  H   H P+S  W  P     K+NVD A  ++    GLGA+ R+ +GD+ G
Subjt:  ITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNGDIKG

Query:  ASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRARMSNC
        A S      ++  + EL AI+EG+  T       +VVE+D   AIN I+   E +G    ++ +I M S+ F S+ F    R  N +AD LAK A  S  
Subjt:  ASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRARMSNC

Query:  SEFWVSNFPDWLVSMVEADQSSL
         + W+   P WL   ++AD   L
Subjt:  SEFWVSNFPDWLVSMVEADQSSL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.5e-2535.04Show/hide
Query:  LELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSN
        L L AIT W IW DRN  +HG+ +     + +W+T +L S  +       N     Q+ H P  Q W+  ++   K+N DAA +    ST  G I RDS+
Subjt:  LELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSN

Query:  GDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRA
          +  A+S       +  +AE++ I EG+    + N   + VESD L AI LI  E    G+ ++ V EI+  + CF+ I FSH +R+ N  A  LAK  
Subjt:  GDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRA

Query:  RMSNCSEF-WVSNFPDWLVSMVEAD-QSSLAQVA
          S  + + W+ NFP WL+ +V+ D  S+ A VA
Subjt:  RMSNCSEF-WVSNFPDWLVSMVEAD-QSSLAQVA

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.6e-2232.48Show/hide
Query:  KLELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDS
        +L L  IT W +W DR+  ++ + IP   I+ +WI  Y +    K              R  P    W+ P     K+N DAA   +   +G+G + R+ 
Subjt:  KLELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDS

Query:  NGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKR
        N +I GA    F +     +A++ AI+EG+ L   L    VVVE+D L+A+NLI +++   GE  S VE+IR  ++ F  I F H+ R  N +A  L + 
Subjt:  NGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKR

Query:  ARMSNCSEFWVSNFPDWLVSMVEA-DQSSLAQVA
             C   W  +FP WL  + EA  Q+S+A +A
Subjt:  ARMSNCSEFWVSNFPDWLVSMVEA-DQSSLAQVA

XP_030936038.1 uncharacterized protein LOC115961147 [Quercus lobata]4.3e-2029.6Show/hide
Query:  ELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNG
        +L A T W +W +RN+  HG    +  +  K   +YLK +   N  +        +N   P +  W  P   ++KVN D A        G+G + R+   
Subjt:  ELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNG

Query:  DIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRAR
        ++ GA S+ F +   G  AE KA++EG+     L  K++V+ESD L   N + E++ +   I+ +VE I    + F+S   +H  R  N+ A  +AK+A+
Subjt:  DIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRAR

Query:  MSNCSEFWVSNFPDWLVSMVEAD
          N    WV + P  +V  V+ D
Subjt:  MSNCSEFWVSNFPDWLVSMVEAD

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]4.3e-2036.77Show/hide
Query:  RHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENE
        + G + + W  P T++ K+NVDAAWK +P S+G  AI RD+ G +K       D  Y  P+AE   + +G+ LT  +N K+++V+SDC  AI+L L+   
Subjt:  RHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENE

Query:  VWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRARMSNCSEFWVSNF
            ++  +EEI   S  F  I F++I R IN +AD +AKR R+   ++ W+ ++
Subjt:  VWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRARMSNCSEFWVSNF

TrEMBL top hitse value%identityAlignment
A0A1R3G9C4 Reverse transcriptase8.8e-1933.81Show/hide
Query:  LELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQ--RWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRD
        +E V  T W IW +RN+  H E +    I    +T  +   L++  ++ P E      R G ++Q  RW  PT   +K+NVDAA+       GLGA+ RD
Subjt:  LELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQ--RWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRD

Query:  SNGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAK
         NGD++  +++      +   AE+ AIK G+ L K    +  +VESDCL  I+ I   + ++ E   L++EIR  +  F SI F H+ R+ N  A  LAK
Subjt:  SNGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAK

Query:  RARMSNCSEF
         A    C+++
Subjt:  RARMSNCSEF

A0A446NU09 RNase H domain-containing protein8.8e-1929.26Show/hide
Query:  ELVAITSWTIWLDRNKAVHGETIPAENIRSKWI----TDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICR
        EL  + +W IW  R + V G  +      +  I    T+YL+S + K    GP            N   W+ P     K+NVDA+++    S   GA+ R
Subjt:  ELVAITSWTIWLDRNKAVHGETIPAENIRSKWI----TDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICR

Query:  DSNGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLA
        D  GD   A+S           AEL AI+ G++L   + C  + +ESDC  A+N + + ++  G   +++ E +     F+SI F H  R  N +AD LA
Subjt:  DSNGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLA

Query:  KRARMSNCSEFWVSNFPDWLVSMVEADQS
        K    +  S  W    PD++  ++  D S
Subjt:  KRARMSNCSEFWVSNFPDWLVSMVEADQS

A0A6J1DX30 uncharacterized protein LOC1110248742.2e-2535.04Show/hide
Query:  LELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSN
        L L AIT W IW DRN  +HG+ +     + +W+T +L S  +       N     Q+ H P  Q W+  ++   K+N DAA +    ST  G I RDS+
Subjt:  LELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSN

Query:  GDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRA
          +  A+S       +  +AE++ I EG+    + N   + VESD L AI LI  E    G+ ++ V EI+  + CF+ I FSH +R+ N  A  LAK  
Subjt:  GDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRA

Query:  RMSNCSEF-WVSNFPDWLVSMVEAD-QSSLAQVA
          S  + + W+ NFP WL+ +V+ D  S+ A VA
Subjt:  RMSNCSEF-WVSNFPDWLVSMVEAD-QSSLAQVA

A0A6J1DZK3 uncharacterized protein LOC1110249687.7e-2332.48Show/hide
Query:  KLELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDS
        +L L  IT W +W DR+  ++ + IP   I+ +WI  Y +    K              R  P    W+ P     K+N DAA   +   +G+G + R+ 
Subjt:  KLELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDS

Query:  NGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKR
        N +I GA    F +     +A++ AI+EG+ L   L    VVVE+D L+A+NLI +++   GE  S VE+IR  ++ F  I F H+ R  N +A  L + 
Subjt:  NGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKR

Query:  ARMSNCSEFWVSNFPDWLVSMVEA-DQSSLAQVA
             C   W  +FP WL  + EA  Q+S+A +A
Subjt:  ARMSNCSEFWVSNFPDWLVSMVEA-DQSSLAQVA

A0A6P5RZ31 uncharacterized protein LOC1107515791.6e-2031.84Show/hide
Query:  ITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNGDIKG
        + SW IWLD+N  +HG+             D L +   +        +  H   H P+S  W  P     K+NVD A  ++    GLGA+ R+ +GD+ G
Subjt:  ITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNGDIKG

Query:  ASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRARMSNC
        A S      ++  + EL AI+EG+  T       +VVE+D   AIN I+   E +G    ++ +I M S+ F S+ F    R  N +AD LAK A  S  
Subjt:  ASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRARMSNC

Query:  SEFWVSNFPDWLVSMVEADQSSL
         + W+   P WL   ++AD   L
Subjt:  SEFWVSNFPDWLVSMVEADQSSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.9e-1525.57Show/hide
Query:  LVAITSWTIWLDRNKAV-HGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNG
        LV    W +W  RN+ +  G+   A  +  + + D+ +    +  +   +  +  +N     S +WKAP   + K N DA W+   P  G+G I R+ +G
Subjt:  LVAITSWTIWLDRNKAV-HGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNG

Query:  DIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRA-
         +    ++      N   AEL+A++  +      N K ++ ESD    +NL L  ++ W  ++  +E+I+     F  + F    R  N +AD +A+ + 
Subjt:  DIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRA-

Query:  RMSNCSEFWVSNFPDWLVS
          SN      S  P WL S
Subjt:  RMSNCSEFWVSNFPDWLVS

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-0524.22Show/hide
Query:  SQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEI
        + +W+ P   + K N D +  +    +GL  I R+S G         F        AE  A+   +     L  + V  E D +  +N ++   E    +
Subjt:  SQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNGDIKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEI

Query:  KSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRARMSNCSEFWVSNFPDWLVSMVEAD
        +  +E I+  S+ F+++ F+   R  NV  D LAK+A  ++ +       P +L+S V  D
Subjt:  KSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRARMSNCSEFWVSNFPDWLVSMVEAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAATTGGAGTTAGTAGCAATTACAAGCTGGACAATTTGGTTAGACAGGAACAAAGCAGTTCATGGTGAAACAATCCCAGCTGAAAATATCAGAAGCAAA
TGGATCACAGATTACCTCAAATCGTTTTTGGAGAAAAATCAGAAGATTGGCCCAAACGAAGATCGATTTCACCAAAATCGCCATGGCCCCAATTCGCAAAGATGG
AAGGCTCCAACTACAAATTATTGGAAAGTTAATGTCGATGCTGCTTGGAAATCAACCCCTCCCTCCACTGGTTTAGGAGCAATCTGTAGGGACTCGAATGGAGAT
ATCAAAGGTGCTTCATCGCAATGCTTTGATGTTGACTATAATGGCCCCATAGCTGAGCTCAAAGCGATTAAAGAAGGAATGTTCCTGACGAAATCCCTAAATTGC
AAAGAGGTGGTAGTAGAGTCTGACTGCCTTCAGGCCATAAATTTGATCTTGGAAGAGAATGAAGTCTGGGGAGAAATAAAGTCTCTGGTAGAAGAAATAAGGATG
GAATCACAGTGTTTTTCAAGTATCATTTTTTCTCATATTACAAGGAGAATCAATGTTATTGCAGATAGCTTAGCCAAAAGAGCGAGAATGTCAAATTGTAGTGAG
TTCTGGGTGTCAAATTTCCCAGATTGGCTTGTGTCTATGGTCGAAGCTGACCAATCTTCTTTAGCCCAAGTGGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAATTGGAGTTAGTAGCAATTACAAGCTGGACAATTTGGTTAGACAGGAACAAAGCAGTTCATGGTGAAACAATCCCAGCTGAAAATATCAGAAGCAAA
TGGATCACAGATTACCTCAAATCGTTTTTGGAGAAAAATCAGAAGATTGGCCCAAACGAAGATCGATTTCACCAAAATCGCCATGGCCCCAATTCGCAAAGATGG
AAGGCTCCAACTACAAATTATTGGAAAGTTAATGTCGATGCTGCTTGGAAATCAACCCCTCCCTCCACTGGTTTAGGAGCAATCTGTAGGGACTCGAATGGAGAT
ATCAAAGGTGCTTCATCGCAATGCTTTGATGTTGACTATAATGGCCCCATAGCTGAGCTCAAAGCGATTAAAGAAGGAATGTTCCTGACGAAATCCCTAAATTGC
AAAGAGGTGGTAGTAGAGTCTGACTGCCTTCAGGCCATAAATTTGATCTTGGAAGAGAATGAAGTCTGGGGAGAAATAAAGTCTCTGGTAGAAGAAATAAGGATG
GAATCACAGTGTTTTTCAAGTATCATTTTTTCTCATATTACAAGGAGAATCAATGTTATTGCAGATAGCTTAGCCAAAAGAGCGAGAATGTCAAATTGTAGTGAG
TTCTGGGTGTCAAATTTCCCAGATTGGCTTGTGTCTATGGTCGAAGCTGACCAATCTTCTTTAGCCCAAGTGGCGTAA
Protein sequenceShow/hide protein sequence
MEKLELVAITSWTIWLDRNKAVHGETIPAENIRSKWITDYLKSFLEKNQKIGPNEDRFHQNRHGPNSQRWKAPTTNYWKVNVDAAWKSTPPSTGLGAICRDSNGD
IKGASSQCFDVDYNGPIAELKAIKEGMFLTKSLNCKEVVVESDCLQAINLILEENEVWGEIKSLVEEIRMESQCFSSIIFSHITRRINVIADSLAKRARMSNCSE
FWVSNFPDWLVSMVEADQSSLAQVA