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Lcy01g010890 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g010890
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr01:31201811..31203618
RNA-Seq ExpressionLcy01g010890
SyntenyLcy01g010890
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7116955.1 hypothetical protein RHSIM_RhsimUnG0010200 [Rhododendron simsii]4.5e-5059.88Show/hide
Query:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL
        E  H I +KRSG + + A KLDM+KAYDRVEW YL++VMAKLGF  KW   V  CI  VSFS  VNG P E F PSRGIRQG  LSPYLFLLC EGFSAL
Subjt:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL

Query:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKN
             S   L GFRIN HCP ISHL FADDS+IFCRA++ +C ++ +++ +Y   SGQ VN EKS+   S N
Subjt:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKN

KAF7152227.1 hypothetical protein RHSIM_Rhsim01G0161700 [Rhododendron simsii]2.9e-4958.72Show/hide
Query:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL
        E  H I +KRSG + + A KLDM++AYDRVEW YL++VM KLGF  KW   V  CI  VSFS  VNG P E F PSRGIRQG  LSPYLFLLC EGFSAL
Subjt:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL

Query:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKN
             S   L GFRIN HCP ISHL FADDS+IFCRA++ +C ++ +++ +Y   SGQ VN EKS+   S N
Subjt:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKN

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]8.2e-5256.9Show/hide
Query:  FECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSA
        FECI+AI NKR GK   +AMKLDMSKAYDRVEW YL  +M K+GF  +W D +  C+  V F+ L+NG P +EF+P+RG+RQGD LSPYLF++CAEG SA
Subjt:  FECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSA

Query:  LLNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKV-SGQLVNFEKSTFMTSKN
        L+N EE   N+   +IN  CP ISHLF+ADD L+F +A+   CRSIK ++  Y K  SGQ +N +KS F+ SKN
Subjt:  LLNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKV-SGQLVNFEKSTFMTSKN

XP_027094917.1 uncharacterized protein LOC113714973 [Coffea arabica]5.3e-5151.02Show/hide
Query:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL
        E +H + NK+ GKE  +A+KLDMSKAYDRVEW +LD +MAKLGF  KWR+ +  C+  V++S  +NG   E  +P RGIRQGD LSPYLFLLC+EGFS L
Subjt:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL

Query:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSH
        L R   S  + G RI    PSI+HLFFADDSLIFC+AN+ +   + +V+ +Y   SGQL+N +KS+ + SKNV  V + +  +I+G++   S   +
Subjt:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSH

XP_027174638.1 uncharacterized protein LOC113774284 [Coffea eugenioides]2.9e-4948.95Show/hide
Query:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL
        E +H +NNKR GK+  +A+KLDMSKAYDRVEW +L+ +M K+GF  KWR  +  CI  VS+S  +NG   E   P+RGIRQGD LSPYLFLLC+EGFS L
Subjt:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL

Query:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDA
        + +   +  + G +I+ H P I+HLFFADDSLIFC+AN+++   + +V+ +Y   SGQL+N +KS+ + SKNV   ++ +  +++G++ +
Subjt:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDA

TrEMBL top hitse value%identityAlignment
A0A2N9IP69 Reverse transcriptase domain-containing protein6.3e-5046.36Show/hide
Query:  FECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSA
        FE +H +NN+RSGK   +A+KLDMSKAYDRVEW +L +VM K+GF   W   +  CIS VS+S L+NG P+    PSRG+RQGD +SPYLFLLCAEG + 
Subjt:  FECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSA

Query:  LLNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSHRLK
        LLN+  S  +++G  I    P ++HLFFADDSL+FCRA + EC  I++V+ +Y +VSGQ +N  K+T   S+N  +  +    +ILG       + +   
Subjt:  LLNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSHRLK

Query:  SSWKSLWKIKTIPRAKSYVW
         S     KI    + K  VW
Subjt:  SSWKSLWKIKTIPRAKSYVW

A0A5B7BN08 Reverse transcriptase domain-containing protein2.0e-5147.48Show/hide
Query:  FECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSA
        FE IH + NKR GK    A+KLDMSKAYDRVEW +L+ VM ++GF  KW D +  C+S VSFS L+NG P     P+RG+RQGD LSPYLF+LCAE FSA
Subjt:  FECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSA

Query:  LLNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSHRLK
        LL + E+   ++G  +  + P +SHLFFADDSL+F  A EN+   I ++IS+YG  SGQ VNFEKS    S NV      +  +ILG    S    H   
Subjt:  LLNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSHRLK

Query:  SSWKSLWKIKTIPRAKSYVWKILNDIVPSDDWLALDYW
           K L    TI R+K   + ++ D V    W  L  W
Subjt:  SSWKSLWKIKTIPRAKSYVWKILNDIVPSDDWLALDYW

A0A6J1DUG8 uncharacterized protein LOC1110241354.0e-5256.9Show/hide
Query:  FECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSA
        FECI+AI NKR GK   +AMKLDMSKAYDRVEW YL  +M K+GF  +W D +  C+  V F+ L+NG P +EF+P+RG+RQGD LSPYLF++CAEG SA
Subjt:  FECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSA

Query:  LLNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKV-SGQLVNFEKSTFMTSKN
        L+N EE   N+   +IN  CP ISHLF+ADD L+F +A+   CRSIK ++  Y K  SGQ +N +KS F+ SKN
Subjt:  LLNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKV-SGQLVNFEKSTFMTSKN

A0A6P6S4B9 uncharacterized protein LOC1136873111.4e-4950Show/hide
Query:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL
        E +H + NK+ GKE  +A+KLDMSKAYDRVEW +LD +MAKLGF  KWR+ +  C+  V++S  +NG   E  +P R IRQGD LSPYLFLLC+EGFS L
Subjt:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL

Query:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSH
        L R   S  + G  I    PSI+HLFFADDSLIFC+AN+ +   + +V+ +Y   SGQL+N +KS+ + SKNV  V + +  +I+G++   S   +
Subjt:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSH

A0A6P6UZ98 uncharacterized protein LOC1137149732.6e-5151.02Show/hide
Query:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL
        E +H + NK+ GKE  +A+KLDMSKAYDRVEW +LD +MAKLGF  KWR+ +  C+  V++S  +NG   E  +P RGIRQGD LSPYLFLLC+EGFS L
Subjt:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSAL

Query:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSH
        L R   S  + G RI    PSI+HLFFADDSLIFC+AN+ +   + +V+ +Y   SGQL+N +KS+ + SKNV  V + +  +I+G++   S   +
Subjt:  LNREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSH

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein1.2e-1025.42Show/hide
Query:  NKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSALLNREESS
        N+   K  +I + +D  KA+D+++  ++ K + KLG    +   +       + + ++NG   E F    G RQG  LSP LF +  E  +  + +E+  
Subjt:  NKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSALLNREESS

Query:  FNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEI
          + G ++      +S   FADD +++        +++ K+IS + KVSG  +N +KS      N  +      GE+
Subjt:  FNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEI

P0CV25 Secreted RxLR effector protein 783.0e-0435.44Show/hide
Query:  IAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAE
        + + LD  KAYD V  ++L  V+ +  F   +   + +     +   LVNG  SE      GIRQG  L+P LF+L AE
Subjt:  IAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAE

P16423 Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM1.3e-0431.58Show/hide
Query:  LDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSALLNREESSFNLYGFRINNHCP
        LD+SKA+D +    +   +   G    + D V         S   +G  SEEF P+RG++QGD LSP LF L  +     L  E       G ++ N   
Subjt:  LDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSALLNREESSFNLYGFRINNHCP

Query:  SISHLFFADDSLIF
        + +   FADD ++F
Subjt:  SISHLFFADDSLIF

P92555 Uncharacterized mitochondrial protein AtMg012505.4e-1451.47Show/hide
Query:  LVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSALLNREESSFNLYGFRINNHCPSISHLFFADDS
        ++NG+P    +PSRG+RQGD LSPYLF+LC E  S L  R +    L G R++N+ P I+HL FADD+
Subjt:  LVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSALLNREESSFNLYGFRINNHCPSISHLFFADDS

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases2.5e-0637.04Show/hide
Query:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSR
        E +H++  K+ G +  + +KLD+ KAYDR+ WDYL+  +   GF   W   ++R
Subjt:  ECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSR

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)3.8e-1551.47Show/hide
Query:  LVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSALLNREESSFNLYGFRINNHCPSISHLFFADDS
        ++NG+P    +PSRG+RQGD LSPYLF+LC E  S L  R +    L G R++N+ P I+HL FADD+
Subjt:  LVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSALLNREESSFNLYGFRINNHCPSISHLFFADDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCCTTTCGAATGCATCCACGCCATTAATAATAAGAGATCGGGGAAAGAAAGGCTTATTGCGATGAAGCTCGATATGAGCAAAGCTTACGACAGAGTGGAA
TGGGACTATCTGGATAAGGTGATGGCCAAATTGGGCTTTGGAGTCAAATGGAGGGACAGAGTTTCGCGATGTATCTCTTTGGTCTCCTTCTCAGCTCTGGTCAAC
GGCAGCCCTAGTGAGGAATTTTCTCCTAGTAGGGGTATCAGGCAAGGGGATCTGTTGTCTCCATACCTCTTTCTCCTTTGTGCTGAAGGCTTCTCGGCTCTCCTA
AACAGGGAAGAATCCTCATTTAATCTATATGGTTTTAGAATTAATAATCATTGTCCCTCCATATCCCATTTATTTTTCGCTGATGATAGTCTCATTTTTTGCAGG
GCCAACGAAAATGAATGCCGATCCATTAAAAAGGTGATCTCCATCTATGGCAAGGTTTCAGGACAGCTAGTGAACTTTGAGAAATCGACTTTCATGACCAGCAAA
AACGTAGGGAAGGTGATCGAATCTAAGTGCGGGGAGATCCTTGGGTCTTTGGATGCGTCGTCTTCGGATTCCCATAGGCTCAAATCTAGTTGGAAGAGTCTGTGG
AAAATCAAGACGATTCCGAGGGCTAAATCCTATGTGTGGAAAATCCTGAATGATATCGTTCCTTCGGATGACTGGTTAGCGCTAGACTATTGGGATTGGCTGTGG
CAAAATCTCAAGGATGAAAAGATGGAGGTTTCGGTGATCCTCATTTGGAGCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATCCTTTCGAATGCATCCACGCCATTAATAATAAGAGATCGGGGAAAGAAAGGCTTATTGCGATGAAGCTCGATATGAGCAAAGCTTACGACAGAGTGGAA
TGGGACTATCTGGATAAGGTGATGGCCAAATTGGGCTTTGGAGTCAAATGGAGGGACAGAGTTTCGCGATGTATCTCTTTGGTCTCCTTCTCAGCTCTGGTCAAC
GGCAGCCCTAGTGAGGAATTTTCTCCTAGTAGGGGTATCAGGCAAGGGGATCTGTTGTCTCCATACCTCTTTCTCCTTTGTGCTGAAGGCTTCTCGGCTCTCCTA
AACAGGGAAGAATCCTCATTTAATCTATATGGTTTTAGAATTAATAATCATTGTCCCTCCATATCCCATTTATTTTTCGCTGATGATAGTCTCATTTTTTGCAGG
GCCAACGAAAATGAATGCCGATCCATTAAAAAGGTGATCTCCATCTATGGCAAGGTTTCAGGACAGCTAGTGAACTTTGAGAAATCGACTTTCATGACCAGCAAA
AACGTAGGGAAGGTGATCGAATCTAAGTGCGGGGAGATCCTTGGGTCTTTGGATGCGTCGTCTTCGGATTCCCATAGGCTCAAATCTAGTTGGAAGAGTCTGTGG
AAAATCAAGACGATTCCGAGGGCTAAATCCTATGTGTGGAAAATCCTGAATGATATCGTTCCTTCGGATGACTGGTTAGCGCTAGACTATTGGGATTGGCTGTGG
CAAAATCTCAAGGATGAAAAGATGGAGGTTTCGGTGATCCTCATTTGGAGCATTTAG
Protein sequenceShow/hide protein sequence
MHPFECIHAINNKRSGKERLIAMKLDMSKAYDRVEWDYLDKVMAKLGFGVKWRDRVSRCISLVSFSALVNGSPSEEFSPSRGIRQGDLLSPYLFLLCAEGFSALL
NREESSFNLYGFRINNHCPSISHLFFADDSLIFCRANENECRSIKKVISIYGKVSGQLVNFEKSTFMTSKNVGKVIESKCGEILGSLDASSSDSHRLKSSWKSLW
KIKTIPRAKSYVWKILNDIVPSDDWLALDYWDWLWQNLKDEKMEVSVILIWSI