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Lcy01g014100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g014100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionNuclear transcription factor Y subunit C
Genome locationChr01:35582775..35583197
RNA-Seq ExpressionLcy01g014100
SyntenyLcy01g014100
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]8.2e-5988.57Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALF+VSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP QPSDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES
        AKDENR R VVDK  P GTRRIDDFFRR  KTTSAETNES
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]4.1e-5888.57Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALFLVSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP QPSDA 
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES
        AKDENR R VVDK  P GTRRIDDFFRR  KTTSAETNES
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES

XP_022132171.1 nuclear transcription factor Y subunit C-1 [Momordica charantia]1.2e-5787.14Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        MAEEESGE IRP+ PTGRVKKIMK+DKDV KVNSEALFLVSCAT+LFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHR ISDFLLDSLPLPPQPSDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES
        AK+ENR RT  DKA PEGTRRIDDFFR+ AKTTS E NES
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]2.0e-5785.71Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        MAEEE GE IRP+FP GR+KKIMK+DKD+GKVNSEALFLVSCATELFL+LLAEKSAEVA EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLP QPSDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES
        AKDENR R VVDK  PEGTRRIDDFFRR  KT SAETNE+
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]8.7e-6190.71Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        MAEEESG+ IRP+FPTGRVKKIMK+DKD+ KVNSEALFLVSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLPPQPSDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES
        AKDENR RTVVDK  PEGTRRIDDFFRR AKTTSAE NES
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein2.8e-5788.32Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        M EEE GE IRP+FPTGRVKKIMK+DKD+GKVNSEALFLVSCATELFLKLLAEKSAE A EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP QPSDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAET
        AKDENR R VVDK  PEGTRRIDDFFRRS KT SAET
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAET

A0A1S3BDL4 dr1-associated corepressor2.0e-5888.57Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALFLVSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP QPSDA 
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES
        AKDENR R VVDK  P GTRRIDDFFRR  KTTSAETNES
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES

A0A5A7VG98 Dr1-associated corepressor4.0e-5988.57Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALF+VSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP QPSDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES
        AKDENR R VVDK  P GTRRIDDFFRR  KTTSAETNES
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES

A0A6J1BRI3 nuclear transcription factor Y subunit C-15.7e-5887.14Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        MAEEESGE IRP+ PTGRVKKIMK+DKDV KVNSEALFLVSCAT+LFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHR ISDFLLDSLPLPPQPSDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES
        AK+ENR RT  DKA PEGTRRIDDFFR+ AKTTS E NES
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES

A0A6J1K737 DNA polymerase epsilon subunit C9.8e-5885.71Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP
        MAEEE GE IRP+FP GR+KKIMK+DKD+GKVNSEALFLVSCATELFL+LLAEKSAEVA EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLP QPSDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAP

Query:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES
        AKDENR R VVDK  PEGTRRIDDFFRR  KT SAETNE+
Subjt:  AKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES

SwissProt top hitse value%identityAlignment
B0XTT5 NCT transcriptional regulatory complex subunit A5.8e-0736.08Show/hide
Query:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSL-PLPPQPSDAPAKDEN
        ++ +FP  R+K+IM+ D+DVGKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++
Subjt:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSL-PLPPQPSDAPAKDEN

Q14919 Dr1-associated corepressor4.9e-0634.15Show/hide
Query:  QFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP
        +FP  R+KKIM+ D+++GKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D +   P
Subjt:  QFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP

Q2YDP3 Dr1-associated corepressor4.9e-0634.15Show/hide
Query:  QFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP
        +FP  R+KKIM+ D+++GKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D +   P
Subjt:  QFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP

Q4X095 NCT transcriptional regulatory complex subunit A5.8e-0736.08Show/hide
Query:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSL-PLPPQPSDAPAKDEN
        ++ +FP  R+K+IM+ D+DVGKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++
Subjt:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSL-PLPPQPSDAPAKDEN

Q9D6N5 Dr1-associated corepressor4.9e-0634.15Show/hide
Query:  QFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP
        +FP  R+KKIM+ D+++GKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D +   P
Subjt:  QFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C101.6e-0731.87Show/hide
Query:  EEESG--EVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLP
        EE+ G  E  + +FP  R+++IM+ D    ++  +A+FLV+ ATE+F++  +E++ + +V+ K+K +  +H+   V   +   +FL DS+P
Subjt:  EEESG--EVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLP

AT3G12480.1 nuclear factor Y, subunit C111.4e-0839.02Show/hide
Query:  QFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP
        +FP  R+KKIM+ D+DVGK+      LVS + ELFL+ L +++ E+ +E+  KTV   H++  V+R+ ++ DFL + +   P
Subjt:  QFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP

AT5G19490.1 Histone superfamily protein4.1e-0834.29Show/hide
Query:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAPAKDEN--RP
        ++ +FP  R+KKIM+ D++VGK+      LVS A ELFL+ L   + +V + +  KTV   H++  V+   ++ DFL D++   P    +  +D++  + 
Subjt:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAPAKDEN--RP

Query:  RTVVD
        R VVD
Subjt:  RTVVD

AT5G27910.1 nuclear factor Y, subunit C85.6e-0538.46Show/hide
Query:  PTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAPAKDENRPRTVVDKA
        P  R+KKIMK D DV  + SEA  L+S A E+F+  L  +S   A E KR T++  ++  AV +   I DFLLD      + S A A D      + D  
Subjt:  PTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAPAKDENRPRTVVDKA

Query:  PPEG
         P G
Subjt:  PPEG

AT5G43250.1 nuclear factor Y, subunit C136.1e-3662.77Show/hide
Query:  EEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAPAK
        EEE G  IRP+FP GRVKKIMK+DKD+ K+NSEAL +++ +TELFL  LAEKSA V  EKKRKTV L+H+R+AVKRH+  SDFLLDSLPLP QP      
Subjt:  EEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAPAK

Query:  DENRPRTVVDK---APPEGTRRIDDFFRR-SAKTTSA
             ++V DK   APP GTRRIDDFF +  AKT SA
Subjt:  DENRPRTVVDK---APPEGTRRIDDFFRR-SAKTTSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAAGAGGAATCCGGAGAGGTTATCCGGCCGCAATTTCCGACAGGACGAGTGAAGAAGATAATGAAGATCGACAAGGACGTCGGCAAAGTGAATTCAGAAGCCCT
GTTTCTCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTTGCCGTCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAG
TCGCCGTCAAAAGGCATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAATCGCCCTCGCACTGTC
GTTGATAAAGCGCCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGTCAGCAAAGACAACGTCGGCGGAGACCAATGAGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAAGAGGAATCCGGAGAGGTTATCCGGCCGCAATTTCCGACAGGACGAGTGAAGAAGATAATGAAGATCGACAAGGACGTCGGCAAAGTGAATTCAGAAGCCCT
GTTTCTCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTTGCCGTCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAG
TCGCCGTCAAAAGGCATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAATCGCCCTCGCACTGTC
GTTGATAAAGCGCCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGTCAGCAAAGACAACGTCGGCGGAGACCAATGAGTCATAG
Protein sequenceShow/hide protein sequence
MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAPAKDENRPRTV
VDKAPPEGTRRIDDFFRRSAKTTSAETNES