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Lcy01g014980 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g014980
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPlant protein of unknown function (DUF247)
Genome locationChr01:36387839..36403961
RNA-Seq ExpressionLcy01g014980
SyntenyLcy01g014980
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016899969.1 PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]4.6e-2356.44Show/hide
Query:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRIN-----MRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHYH
        MN IAY PQVISIGPFHHG + L   ER+KLQ L  FLRR++       +E+++ IA+ W  +ARRCYA+PI+M+  +FVKMMLVDGCF++EF IL H  
Subjt:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRIN-----MRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHYH

Query:  F
        +
Subjt:  F

XP_022132066.1 UPF0481 protein At3g47200-like [Momordica charantia]1.0e-2259.38Show/hide
Query:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHYHF
        +N +AYTPQ ISIGPFHHGQ+  M ME+ KL+ L+ +LRR+ M +ED   IA+ WE  AR+CYAE I+M  D+FVKMMLVDG FL+EF I  HY +
Subjt:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHYHF

XP_022158989.1 UPF0481 protein At3g47200-like isoform X1 [Momordica charantia]7.0e-2462.07Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL
        AY PQ+ISIGPFHHG++ LM ME+HKL+ L+ +LRR N  +E  + I R WE  AR CYAEPINM+ D+FVKMMLVDGCF++E M++
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL

XP_022158990.1 UPF0481 protein At3g47200-like isoform X2 [Momordica charantia]7.0e-2462.07Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL
        AY PQ+ISIGPFHHG++ LM ME+HKL+ L+ +LRR N  +E  + I R WE  AR CYAEPINM+ D+FVKMMLVDGCF++E M++
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL

XP_022158992.1 UPF0481 protein At3g47200-like isoform X3 [Momordica charantia]7.0e-2462.07Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL
        AY PQ+ISIGPFHHG++ LM ME+HKL+ L+ +LRR N  +E  + I R WE  AR CYAEPINM+ D+FVKMMLVDGCF++E M++
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL

TrEMBL top hitse value%identityAlignment
A0A1S4DVF8 UPF0481 protein At3g47200-like2.2e-2356.44Show/hide
Query:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRIN-----MRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHYH
        MN IAY PQVISIGPFHHG + L   ER+KLQ L  FLRR++       +E+++ IA+ W  +ARRCYA+PI+M+  +FVKMMLVDGCF++EF IL H  
Subjt:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRIN-----MRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHYH

Query:  F
        +
Subjt:  F

A0A5A7VCD8 UPF0481 protein2.2e-2356.44Show/hide
Query:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRIN-----MRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHYH
        MN IAY PQVISIGPFHHG + L   ER+KLQ L  FLRR++       +E+++ IA+ W  +ARRCYA+PI+M+  +FVKMMLVDGCF++EF IL H  
Subjt:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRIN-----MRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHYH

Query:  F
        +
Subjt:  F

A0A6J1DXD6 UPF0481 protein At3g47200-like isoform X23.4e-2462.07Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL
        AY PQ+ISIGPFHHG++ LM ME+HKL+ L+ +LRR N  +E  + I R WE  AR CYAEPINM+ D+FVKMMLVDGCF++E M++
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL

A0A6J1DYL4 UPF0481 protein At3g47200-like isoform X33.4e-2462.07Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL
        AY PQ+ISIGPFHHG++ LM ME+HKL+ L+ +LRR N  +E  + I R WE  AR CYAEPINM+ D+FVKMMLVDGCF++E M++
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL

A0A6J1E120 UPF0481 protein At3g47200-like isoform X13.4e-2462.07Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL
        AY PQ+ISIGPFHHG++ LM ME+HKL+ L+ +LRR N  +E  + I R WE  AR CYAEPINM+ D+FVKMMLVDGCF++E M++
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL

SwissProt top hitse value%identityAlignment
P0C897 Putative UPF0481 protein At3g026452.8e-0732.98Show/hide
Query:  NPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRIN-MRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHY
        +P +YTP  +SIGP+H  +  L  MER+KL        + N  R  D++   +  E   R CY + I  N +  + +M VD  FL+EF+ ++ +
Subjt:  NPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRIN-MRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHY

Q9SD53 UPF0481 protein At3g472007.1e-1136.17Show/hide
Query:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMR-VEDIIAIARY--WERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL
        +NP AY P+V+SIGP+H+G++HL  +++HK + L +FL     + VE+ + +      E   R+ Y+E +   H D + MM++DGCF+L   ++
Subjt:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMR-VEDIIAIARY--WERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMIL

Arabidopsis top hitse value%identityAlignment
AT3G50150.1 Plant protein of unknown function (DUF247)1.0e-1746.43Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINM-NHDDFVKMMLVDGCFLLE
        +Y PQ +SIGP+HHG+ HL  MERHK +A+N+ + R    +E  I   +  E +AR CY  PI+M N ++F +M+++DGCF+LE
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINM-NHDDFVKMMLVDGCFLLE

AT3G50160.1 Plant protein of unknown function (DUF247)1.9e-1946.99Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLE
        +Y PQ++SIGP+HHG +HLM MERHK +A+N+ + R    +E  I   +  E  AR CY  PINMN ++F++M+++DG F++E
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLE

AT3G50170.1 Plant protein of unknown function (DUF247)2.8e-1845.78Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLE
        +Y PQ +S+GP+HHG++ L  MERHK +ALN  L+R+  R+E      R  E  AR CY  PI+++ ++F +M+++DGCF+LE
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLE

AT3G50170.2 Plant protein of unknown function (DUF247)2.8e-1845.78Show/hide
Query:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLE
        +Y PQ +S+GP+HHG++ L  MERHK +ALN  L+R+  R+E      R  E  AR CY  PI+++ ++F +M+++DGCF+LE
Subjt:  AYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLE

AT4G31980.1 unknown protein2.4e-2246.81Show/hide
Query:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHY
        +NP AYTP+++S GP H G+E L  ME  K + L  F+ R N  +ED++ +AR WE++AR CYAE + ++ D+FV+M++VDG FL+E ++  HY
Subjt:  MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCTATAGCCTATACGCCTCAAGTCATTTCCATTGGCCCTTTTCACCATGGTCAAGAGCATTTGATGACCATGGAACGACATAAGCTTCAGGCTCTCAAT
ATCTTCCTACGTCGGATAAATATGAGAGTTGAGGATATCATTGCAATTGCTCGATATTGGGAAAGGGACGCTCGTCGTTGCTATGCAGAACCCATAAACATGAAC
CACGATGATTTTGTGAAAATGATGCTTGTGGACGGTTGTTTCCTACTGGAGTTTATGATACTATTTCATTACCACTTCCGTCCACCACCTCAAATTCTAACGTTA
TATTGCCCATTCTATGAAGTACTTGAAATGGACTTTGGTCATTCCCTTGCAGAATCCATGGAACAAATGCTCCGGCAATTGGCTTTGGACGCTACAAAATGCAGC
ATCTATCGTGTTCCCAAACGGTTACTCGACATGAAAGCTTATACACCTCAAGTCATTTCCATTGGCCCTTTTCACCATGGTCAAAAGCATTTGGAGGCCATGGAA
GGACATAAGCTTATGGGTCTCAAAATTTACCTACATCTTATAAACATGAGAGTTGAGGTTGCCATCAGAATTGCTCAAAATTGGGTAGGGAAAGCTCGTGGTTAC
TATGCAGAGCCCATTAACATGGGATTCTCACTTAAATTAACCGATTGGGAAGTGATTTTAGCGACTGCACTGTATTTTGAGGTTTGGGCAGTGATTCGAGCGACT
GCACTGTATTTTGGGGTTTGGGCAGTGTTTGAAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCTATAGCCTATACGCCTCAAGTCATTTCCATTGGCCCTTTTCACCATGGTCAAGAGCATTTGATGACCATGGAACGACATAAGCTTCAGGCTCTCAAT
ATCTTCCTACGTCGGATAAATATGAGAGTTGAGGATATCATTGCAATTGCTCGATATTGGGAAAGGGACGCTCGTCGTTGCTATGCAGAACCCATAAACATGAAC
CACGATGATTTTGTGAAAATGATGCTTGTGGACGGTTGTTTCCTACTGGAGTTTATGATACTATTTCATTACCACTTCCGTCCACCACCTCAAATTCTAACGTTA
TATTGCCCATTCTATGAAGTACTTGAAATGGACTTTGGTCATTCCCTTGCAGAATCCATGGAACAAATGCTCCGGCAATTGGCTTTGGACGCTACAAAATGCAGC
ATCTATCGTGTTCCCAAACGGTTACTCGACATGAAAGCTTATACACCTCAAGTCATTTCCATTGGCCCTTTTCACCATGGTCAAAAGCATTTGGAGGCCATGGAA
GGACATAAGCTTATGGGTCTCAAAATTTACCTACATCTTATAAACATGAGAGTTGAGGTTGCCATCAGAATTGCTCAAAATTGGGTAGGGAAAGCTCGTGGTTAC
TATGCAGAGCCCATTAACATGGGATTCTCACTTAAATTAACCGATTGGGAAGTGATTTTAGCGACTGCACTGTATTTTGAGGTTTGGGCAGTGATTCGAGCGACT
GCACTGTATTTTGGGGTTTGGGCAGTGTTTGAAAAGTGA
Protein sequenceShow/hide protein sequence
MNPIAYTPQVISIGPFHHGQEHLMTMERHKLQALNIFLRRINMRVEDIIAIARYWERDARRCYAEPINMNHDDFVKMMLVDGCFLLEFMILFHYHFRPPPQILTL
YCPFYEVLEMDFGHSLAESMEQMLRQLALDATKCSIYRVPKRLLDMKAYTPQVISIGPFHHGQKHLEAMEGHKLMGLKIYLHLINMRVEVAIRIAQNWVGKARGY
YAEPINMGFSLKLTDWEVILATALYFEVWAVIRATALYFGVWAVFEK