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Lcy01g016840 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy01g016840
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr01:38450424..38453378
RNA-Seq ExpressionLcy01g016840
SyntenyLcy01g016840
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ40599.1 putative ribonuclease H-like domain-containing protein [Rosa chinensis]1.0e-0935.65Show/hide
Query:  SSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPR
        +  G+  + RD+ GR +GA  Q L+ + P    EL AI  G+EFA   G S L+VE DCL+  NLLS++ E  +E G +   ++R  +  +     + PR
Subjt:  SSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPR

Query:  ECNSIADAIAKRAKR
        E N  A  +A+   R
Subjt:  ECNSIADAIAKRAKR

XP_024046567.1 uncharacterized protein LOC112100924 [Citrus clementina]3.9e-0932.17Show/hide
Query:  DASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYV
        D  S G+ V+ R+ RG++L A  +S+N    + + E  AI  G+E A  +  S +I+ETDC    +L ++ +    E+   + +I + +   + I F +V
Subjt:  DASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYV

Query:  PRECNSIADAIAKRA
         R+CN  A  +AKRA
Subjt:  PRECNSIADAIAKRA

XP_030970592.1 uncharacterized protein LOC115990972 [Quercus lobata]1.3e-0935Show/hide
Query:  DASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYV
        +A    I V+ +D RG  +GA   S+  +  +   E  A  K +EFA  +G  ++I E D     N L+Q+    +  G ++++IR  +L  E  VF++ 
Subjt:  DASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYV

Query:  PRECNSIADAIAKRAKREKS
         R CNS+ADAIAK+AK  +S
Subjt:  PRECNSIADAIAKRAKREKS

XP_042974894.1 uncharacterized protein LOC122306534 [Carya illinoinensis]3.0e-0935.04Show/hide
Query:  DASSTGIRVICRDDRGRILGACCQSLNSSFPLP-MTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSY
        D +  G+ V+ RD  GR+L AC +S   + P P + E  A+++G++F    G SK+++ETDCL     L+   E   E   ++  I+R  L  +EI F +
Subjt:  DASSTGIRVICRDDRGRILGACCQSLNSSFPLP-MTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSY

Query:  VPRECNSIADAIAKRAK
        V R+ N++A  +AK A+
Subjt:  VPRECNSIADAIAKRAK

XP_042985441.1 uncharacterized protein LOC122314103 [Carya illinoinensis]2.1e-1035.34Show/hide
Query:  WDASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSY
        +D    G+ VI RDD+G +L AC +           E  A+++G+ F +  G SKLI+E+DCL   N L  + E + E+G L+ +IRR     +E+  S+
Subjt:  WDASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSY

Query:  VPRECNSIADAIAKRA
        V R  N     +AK A
Subjt:  VPRECNSIADAIAKRA

TrEMBL top hitse value%identityAlignment
A0A2P6R2K8 Putative ribonuclease H-like domain-containing protein4.9e-1035.65Show/hide
Query:  SSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPR
        +  G+  + RD+ GR +GA  Q L+ + P    EL AI  G+EFA   G S L+VE DCL+  NLLS++ E  +E G +   ++R  +  +     + PR
Subjt:  SSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPR

Query:  ECNSIADAIAKRAKR
        E N  A  +A+   R
Subjt:  ECNSIADAIAKRAKR

A0A2P6SD65 Putative ribonuclease H-like domain-containing protein5.5e-0934.78Show/hide
Query:  SSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPR
        +  G   + R +RGR +GA  Q L+ + P    EL AI  G+EFA   G S L+VE DCL+  NLLS++ E  +  G +   ++R  +  +     + PR
Subjt:  SSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPR

Query:  ECNSIADAIAKRAKR
        E N  A  +A+   R
Subjt:  ECNSIADAIAKRAKR

A0A5B6VSY9 Reverse transcriptase3.5e-0830.43Show/hide
Query:  SSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPR
        +S  + V+ R+DRG I+GAC   +N +    + E +A  + + FA  MG  K++VE D L     +  +++  + +  ++ NIR  +   E+I FS++PR
Subjt:  SSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPR

Query:  ECNSIADAIAKRAKR
        + N +A  +A    R
Subjt:  ECNSIADAIAKRAKR

A0A6P5RZ31 uncharacterized protein LOC1107515796.0e-0830.91Show/hide
Query:  GIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPRECN
        G+  + R+  G ++GA    +   F   +TEL AI +G++F    G   L+VETD     N +    E +   G ++++I   S + + + F + PR CN
Subjt:  GIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPRECN

Query:  SIADAIAKRA
        ++AD +AK A
Subjt:  SIADAIAKRA

A0A7N2RC67 Uncharacterized protein6.0e-0834.78Show/hide
Query:  ASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVP
        +SS GI VI RD RG  +GA       S  + + E  A  + V FA  +G  ++I E D       + Q      E G ++D+IR   +  + I F++V 
Subjt:  ASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVP

Query:  RECNSIADAIAKRAK
        R CN++ADA+ K+AK
Subjt:  RECNSIADAIAKRAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCCTGGGATGCCTCTTCTACTGGCATCAGAGTGATTTGCCGGGATGATAGGGGGAGAATTTTGGGTGCCTGTTGTCAATCTCTAAATTCTTCTTTCCCT
CTTCCCATGACGGAACTGAAGGCTATCATGAAAGGGGTAGAGTTTGCATCTTCCATGGGTGGGAGTAAATTGATTGTGGAGACAGATTGCCTTCAAACTTATAAC
TTGCTGAGTCAAGATATTGAAATCTGGAATGAAGTTGGAACTCTGGTAGATAATATTCGAAGAAGGTCTTTGTCTGGTGAGGAAATTGTTTTTTCATATGTTCCT
CGTGAGTGTAATTCAATAGCAGATGCTATTGCTAAGAGAGCCAAGCGTGAAAAGTCCATGGGAGGGGCAATTATTGGAGCTGCAAAGTGCAAAAAACAAGCTCAT
GATTGGCAAAAGCGTCGTCGTTTTCCTCGAGCTTTTCCGACAACTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCCTGGGATGCCTCTTCTACTGGCATCAGAGTGATTTGCCGGGATGATAGGGGGAGAATTTTGGGTGCCTGTTGTCAATCTCTAAATTCTTCTTTCCCT
CTTCCCATGACGGAACTGAAGGCTATCATGAAAGGGGTAGAGTTTGCATCTTCCATGGGTGGGAGTAAATTGATTGTGGAGACAGATTGCCTTCAAACTTATAAC
TTGCTGAGTCAAGATATTGAAATCTGGAATGAAGTTGGAACTCTGGTAGATAATATTCGAAGAAGGTCTTTGTCTGGTGAGGAAATTGTTTTTTCATATGTTCCT
CGTGAGTGTAATTCAATAGCAGATGCTATTGCTAAGAGAGCCAAGCGTGAAAAGTCCATGGGAGGGGCAATTATTGGAGCTGCAAAGTGCAAAAAACAAGCTCAT
GATTGGCAAAAGCGTCGTCGTTTTCCTCGAGCTTTTCCGACAACTTTCTGA
Protein sequenceShow/hide protein sequence
MRAWDASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVP
RECNSIADAIAKRAKREKSMGGAIIGAAKCKKQAHDWQKRRRFPRAFPTTF