CuGenDBv2

Gene ID	Lcy01g018230
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	F-box protein GID2-like
Genome location	Chr01:39797678..39798130
RNA-Seq Expression	Lcy01g018230
Synteny	Lcy01g018230
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-61

86.23

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQWYKTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        +IGSA C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

9.7e-58

82.07

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Query:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS
        N +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHS
Subjt:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS

Query:  LYPFAPMIGSAPCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPF PMIG   CN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFAPMIGSAPCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]

2.7e-60

84.78

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQW KTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        ++GSA C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_022996700.1 F-box protein GID2-like [Cucurbita maxima]

1.4e-59

84.78

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  QEQ  PP   + FANLDD+LLFEVFKHVDARTLATA+ VSKQWYKTAHDE LWEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        +IGSA C  WGK EVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

2.9e-62

87.05

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Query:  MKKIKSDFQEQ---PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFA
        MKKIKS  QEQ   PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQWYKTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF 
Subjt:  MKKIKSDFQEQ---PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFA

Query:  PMIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        P+IGSA C PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PMIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR75 F-box domain-containing protein

1.4e-57

80.42

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Query:  NPMKKIKSDFQEQPP----VPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY
        N +KK KS   +Q P      P+ FANLDD+LLFEVFKHVDARTLAT A VSKQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLY
Subjt:  NPMKKIKSDFQEQPP----VPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY

Query:  PFAPMIGSAPCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PF PMIG   CN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PFAPMIGSAPCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A1S3BDV6 F-box protein GID2-like

4.7e-58

82.07

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Query:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS
        N +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHS
Subjt:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS

Query:  LYPFAPMIGSAPCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPF PMIG   CN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFAPMIGSAPCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A5A7V5E1 F-box protein GID2-like

4.7e-58

82.07

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Query:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS
        N +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHS
Subjt:  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHS

Query:  LYPFAPMIGSAPCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPF PMIG   CN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFAPMIGSAPCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1HCI1 F-box protein GID2-like

1.3e-60

84.78

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQW KTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        ++GSA C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1K7I7 F-box protein GID2-like

6.5e-60

84.78

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Query:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  QEQ  PP   + FANLDD+LLFEVFKHVDARTLATA+ VSKQWYKTAHDE LWEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        +IGSA C  WGK EVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  MIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.5e-24

47.29

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Query:  EQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY--PFAPMIGSAPCNP
        EQP VP     +L +DL+FEV +  +ARTLA AA VS+ W + A DERLWE  C + WAN+G + +QLR+VVL+LGGFRRLH++Y  P        P   
Subjt:  EQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY--PFAPMIGSAPCNP

Query:  --------WGKDEVHLSLSLLSIRYYEKM
                 G+D+V LSLSL SI +++ M
Subjt:  --------WGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

2.9e-12

34.51

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Query:  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHL
        P    N   D+L E+ + +D  +L +AA V + W   A ++ +WE +C +  +     +  LRSVV ALGG+R L+ L    P++   P   W +D++ L
Subjt:  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHL

Query:  SLSLLSIRYYEKM
        SLSL  + YYE++
Subjt:  SLSLLSIRYYEKM

Q9STX3 F-box protein GID2

5.9e-42

63.91

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Query:  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG
        KK+KS  +E+      GF+NLD++L++EV KHVDA+TLA ++ VSK W+KTA DERLWELICT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+  
Subjt:  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG

Query:  SAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRP
          P   +GKDE+ L+LSLLSIRYYEKM F  RP
Subjt:  SAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRP

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

5.0e-04

31.94

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Query:  PVPPTGFAN-------------LDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIG
        PVPP G  +             L D+LLFEVF  +    L  A+ V ++W  T  +   W   C K W   G
Subjt:  PVPPTGFAN-------------LDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIG

AT4G24210.1 F-box family protein

4.2e-43

63.91

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Query:  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG
        KK+KS  +E+      GF+NLD++L++EV KHVDA+TLA ++ VSK W+KTA DERLWELICT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+  
Subjt:  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG

Query:  SAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRP
          P   +GKDE+ L+LSLLSIRYYEKM F  RP
Subjt:  SAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRP

AT5G48170.1 F-box family protein

2.0e-13

34.51

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Query:  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHL
        P    N   D+L E+ + +D  +L +AA V + W   A ++ +WE +C +  +     +  LRSVV ALGG+R L+ L    P++   P   W +D++ L
Subjt:  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHL

Query:  SLSLLSIRYYEKM
        SLSL  + YYE++
Subjt:  SLSLLSIRYYEKM

Sequences

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CDS sequence

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ATGAAGAAGCGCCCTCTTTCCCACCAAGATTCCTTCAATCCCATGAAGAAAATCAAGTCAGATTTTCAGGAACAACCACCAGTACCACCAACTGGGTTTGCTAAT
TTAGACGACGATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCGGCCGCCGTCAGCAAGCAGTGGTACAAAACGGCGCACGACGAG
CGCCTCTGGGAGCTCATCTGCACCAAACACTGGGCCAACATCGGCTGTGCCAACCAACAGCTACGCTCCGTCGTGCTCGCGCTTGGTGGCTTCCGTCGATTGCAC
TCTCTTTACCCATTTGCGCCGATGATTGGATCGGCGCCCTGTAATCCATGGGGGAAAGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGCTACTACGAG
AAGATGAAATTCAAAAACAGACCCACTTCTTGA

mRNA sequence

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Protein sequence

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MKKRPLSHQDSFNPMKKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLH
SLYPFAPMIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

Lcy01g018230 (gene) of Sponge gourd (P93075) v1 genome