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Lcy02g005490 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g005490
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr02:7211066..7212550
RNA-Seq ExpressionLcy02g005490
SyntenyLcy02g005490
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006471930.1 uncharacterized protein LOC102617744 [Citrus sinensis]1.1e-1325.1Show/hide
Query:  METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQT-
        +ET  H LF C  ARK W +      L+             + +NS + + E+M+  CWAIW   NK I   +    IV        L+ Y++     T 
Subjt:  METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQT-

Query:  ----------------PKEDISL----------EMINLGEASNPSNW--------TDEFLHDIDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAV
                        P   + L          + + LG     SN            F  D+ F    A+ +AI  GL +AKK     +I+++DCK   
Subjt:  ----------------PKEDISL----------EMINLGEASNPSNW--------TDEFLHDIDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAV

Query:  NFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCNGLNESWTHII
          V+      S++  I+ EI   +++F+ + +NF+PR  N  A  +AK A        W  I+
Subjt:  NFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCNGLNESWTHII

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]7.8e-1224.12Show/hide
Query:  METTDHILFNCSRARKIWRIIARRAYLE-IDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKA-----
        ME T H +  C RA+KIW ++    +   I+ N SF+D W+ +    + +  ++     WAIW D N   HG  + +  +R NWI  Y   Y +A     
Subjt:  METTDHILFNCSRARKIWRIIARRAYLE-IDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKA-----

Query:  -----------NLKQTPKEDISLEMINLGEASNPSNWTDEFLHD--------------IDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFV
                   + +  P  D ++++ +     + S      + D              +  N   A+++ ILE L LA      +++++SDC++A+  V
Subjt:  -----------NLKQTPKEDISLEMINLGEASNPSNWTDEFLHD--------------IDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFV

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]2.7e-1236.96Show/hide
Query:  METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYR
        +ETTDH LF C RA+++W I+  +A+ + DFNNS  D  + +  + S  D +++    WAIWND N      +IP   +R +WI+ Y+ +++
Subjt:  METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.5e-1222.58Show/hide
Query:  ETTDHILFNCSRARKIWR-IIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQ--
        E+  H  F+C RAR+IWR +      L  + N SF++ W  +      +D+ +     W IWND N  IHG+++     +  W+  +LD + +A +    
Subjt:  ETTDHILFNCSRARKIWR-IIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQ--

Query:  --------------TPKEDISLEMINLGEASNPSNWTDEFLHD--------------IDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSK
                       P   +SL++         S      + D                 +  +A+++ ILEGL  A       + ++SD   A+  +  
Subjt:  --------------TPKEDISLEMINLGEASNPSNWTDEFLHD--------------IDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSK

Query:  LSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCN-GLNESWTHIIHEWIVFVVEND-QTFSAHVA
              D +  V EI  +   F  + ++   R+ NR A  +AK    +     +W      W++ +V+ D  +  AHVA
Subjt:  LSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCN-GLNESWTHIIHEWIVFVVEND-QTFSAHVA

XP_030931239.1 uncharacterized protein LOC115957159 [Quercus lobata]2.7e-1224.07Show/hide
Query:  ETTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVD-SWIKINANS-SKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQT
        ETT H+L+ C  A+++W  +       +D    F+D  W   N    S+EDI +MV   W IW +WN+  HG       +R  W   YL++Y  AN +  
Subjt:  ETTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVD-SWIKINANS-SKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQT

Query:  PKEDISLEMINLGE----ASNPSNWTDEFLHDIDF-------------------NAPIAKM----KAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLS
        P  +    +  L +     +N  + T E   ++                      AP+  +    KA+ E +  A   G    + +SD +  +N +  L+
Subjt:  PKEDISLEMINLGE----ASNPSNWTDEFLHDIDF-------------------NAPIAKM----KAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLS

Query:  DPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCNGLNESWTHIIHEWIVFVVENDQTF
        +  S +  I+  +      F  V ++ +P   N+VA  +A+ A+      +W       I  +V  D TF
Subjt:  DPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCNGLNESWTHIIHEWIVFVVENDQTF

TrEMBL top hitse value%identityAlignment
A0A5C7IQ65 RNase H domain-containing protein2.4e-1124.78Show/hide
Query:  ETTDHILFNCSRARKIWRIIARRAYLEIDFNN-SFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQTP
        ET+ H L+ CS  +++ R +   A  +   +N  F++  I  ++    ++ E++    W +W+  NK +H   I       +W   ++ +YR AN +Q  
Subjt:  ETTDHILFNCSRARKIWRIIARRAYLEIDFNN-SFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQTP

Query:  KEDISLEMINLGEASNPSNWTDEFLHDIDFNA-----------------PIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVE
                +   E   P  W       +  N                  PIA+  AILEGL  A      K+ ++SD    V  ++  S P S+V  ++ 
Subjt:  KEDISLEMINLGEASNPSNWTDEFLHDIDFNA-----------------PIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVE

Query:  EIWDMEKDFEVVIYNFIPRKENRVADFIAK
        +I+ +   F  V + F+PR  N+VA  +AK
Subjt:  EIWDMEKDFEVVIYNFIPRKENRVADFIAK

A0A6J1CTE3 uncharacterized protein LOC1110145781.3e-1236.96Show/hide
Query:  METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYR
        +ETTDH LF C RA+++W I+  +A+ + DFNNS  D  + +  + S  D +++    WAIWND N      +IP   +R +WI+ Y+ +++
Subjt:  METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYR

A0A6J1DX30 uncharacterized protein LOC1110248742.2e-1222.58Show/hide
Query:  ETTDHILFNCSRARKIWR-IIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQ--
        E+  H  F+C RAR+IWR +      L  + N SF++ W  +      +D+ +     W IWND N  IHG+++     +  W+  +LD + +A +    
Subjt:  ETTDHILFNCSRARKIWR-IIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQ--

Query:  --------------TPKEDISLEMINLGEASNPSNWTDEFLHD--------------IDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSK
                       P   +SL++         S      + D                 +  +A+++ ILEGL  A       + ++SD   A+  +  
Subjt:  --------------TPKEDISLEMINLGEASNPSNWTDEFLHD--------------IDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSK

Query:  LSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCN-GLNESWTHIIHEWIVFVVEND-QTFSAHVA
              D +  V EI  +   F  + ++   R+ NR A  +AK    +     +W      W++ +V+ D  +  AHVA
Subjt:  LSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCN-GLNESWTHIIHEWIVFVVEND-QTFSAHVA

A0A6J1DZK3 uncharacterized protein LOC1110249685.4e-1126.02Show/hide
Query:  NSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYR------------KANLKQTPKEDISLEMINLGEASNPSNWTDEFLHD-----
        N S  ++ +    CWA+WND +  I+ ++IP  +++  WI+KY +E R            + N  + P   + ++M      S   +     L +     
Subjt:  NSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYR------------KANLKQTPKEDISLEMINLGEASNPSNWTDEFLHD-----

Query:  ----IDFNAP----IAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPW-SDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKE
            +DF+      +AK+ AI EGLSLA + G  ++++++D  +A+N +   S PW  +  + VE+I    +DF+ + +  + R+ N VA  + +E
Subjt:  ----IDFNAP----IAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPW-SDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKE

A0A6P6S611 uncharacterized protein LOC1136874835.4e-1122.39Show/hide
Query:  METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKIN----ANSSKEDIEVMVTACWAIWNDWNKKIHGE--EIPSEIVR---GNWI----IKY
        MET +H+ F C +A + W++   R    +    +F   W ++      N  +E + + +   W IW   NK    +  + P  IVR     W+    ++ 
Subjt:  METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKIN----ANSSKEDIEVMVTACWAIWNDWNKKIHGE--EIPSEIVR---GNWI----IKY

Query:  LDEY-----------------RKANLKQTPKEDISLEMINLGEASNPSNWTDEFLHDIDF------NAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQA
         D+                  RK  ++      IS + +  G+     NW  + L           +A   + +A+   L +A + G  KII+ +DCK  
Subjt:  LDEY-----------------RKANLKQTPKEDISLEMINLGEASNPSNWTDEFLHDIDF------NAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQA

Query:  VNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCNGLNESWTHIIHEWI
        V  ++K  +      AI+E++ ++   FE   + FIPR EN+++  +A+ A     +  W +    W+
Subjt:  VNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCNGLNESWTHIIHEWI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.7e-0531.71Show/hide
Query:  IAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEA
        +A+  A+   L  A+  G  K+ + SD +Q +  ++  S P ++   I+ +I ++   F  V ++F+PR ENRVAD +AK +
Subjt:  IAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTACTGACCATATTTTGTTTAACTGTTCTCGTGCAAGGAAAATCTGGAGAATTATTGCAAGGAGAGCATACTTGGAGATAGATTTCAACAACAGCTTTGTGGA
TAGTTGGATCAAGATCAATGCAAACTCATCAAAGGAGGATATCGAAGTGATGGTGACAGCTTGCTGGGCTATATGGAACGATTGGAACAAGAAGATCCATGGAGAAGAAA
TCCCATCAGAAATCGTTCGAGGCAATTGGATAATTAAATACTTGGATGAGTATCGGAAAGCTAACCTAAAGCAAACTCCGAAGGAAGATATTTCTCTGGAAATGATCAAT
CTGGGCGAAGCCTCGAATCCCTCAAATTGGACGGATGAATTTTTGCATGATATCGATTTTAATGCCCCTATTGCAAAAATGAAAGCAATCCTCGAAGGCTTGAGCTTGGC
AAAGAAATGTGGTGGTGGGAAAATCATAATAAAATCTGATTGTAAACAAGCGGTGAACTTTGTGTCAAAACTTTCAGATCCCTGGAGTGACGTGGAAGCCATTGTCGAAG
AGATATGGGATATGGAGAAAGACTTTGAGGTGGTGATTTACAATTTTATCCCTAGAAAGGAAAATAGAGTAGCTGACTTTATTGCCAAAGAAGCAAAATGTAATGGCTTA
AATGAGAGCTGGACTCACATCATCCATGAGTGGATTGTGTTTGTGGTCGAGAATGACCAAACATTTTCTGCCCACGTGGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTACTGACCATATTTTGTTTAACTGTTCTCGTGCAAGGAAAATCTGGAGAATTATTGCAAGGAGAGCATACTTGGAGATAGATTTCAACAACAGCTTTGTGGA
TAGTTGGATCAAGATCAATGCAAACTCATCAAAGGAGGATATCGAAGTGATGGTGACAGCTTGCTGGGCTATATGGAACGATTGGAACAAGAAGATCCATGGAGAAGAAA
TCCCATCAGAAATCGTTCGAGGCAATTGGATAATTAAATACTTGGATGAGTATCGGAAAGCTAACCTAAAGCAAACTCCGAAGGAAGATATTTCTCTGGAAATGATCAAT
CTGGGCGAAGCCTCGAATCCCTCAAATTGGACGGATGAATTTTTGCATGATATCGATTTTAATGCCCCTATTGCAAAAATGAAAGCAATCCTCGAAGGCTTGAGCTTGGC
AAAGAAATGTGGTGGTGGGAAAATCATAATAAAATCTGATTGTAAACAAGCGGTGAACTTTGTGTCAAAACTTTCAGATCCCTGGAGTGACGTGGAAGCCATTGTCGAAG
AGATATGGGATATGGAGAAAGACTTTGAGGTGGTGATTTACAATTTTATCCCTAGAAAGGAAAATAGAGTAGCTGACTTTATTGCCAAAGAAGCAAAATGTAATGGCTTA
AATGAGAGCTGGACTCACATCATCCATGAGTGGATTGTGTTTGTGGTCGAGAATGACCAAACATTTTCTGCCCACGTGGCGTAA
Protein sequenceShow/hide protein sequence
METTDHILFNCSRARKIWRIIARRAYLEIDFNNSFVDSWIKINANSSKEDIEVMVTACWAIWNDWNKKIHGEEIPSEIVRGNWIIKYLDEYRKANLKQTPKEDISLEMIN
LGEASNPSNWTDEFLHDIDFNAPIAKMKAILEGLSLAKKCGGGKIIIKSDCKQAVNFVSKLSDPWSDVEAIVEEIWDMEKDFEVVIYNFIPRKENRVADFIAKEAKCNGL
NESWTHIIHEWIVFVVENDQTFSAHVA