; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy02g006580 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g006580
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionSWIM-type domain-containing protein
Genome locationChr02:8702200..8702978
RNA-Seq ExpressionLcy02g006580
SyntenyLcy02g006580
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032265.1 MuDRA-like transposase [Cucumis melo var. makuwa]1.6e-4553.99Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        ++++L+SWAE ++RK   +SRSF V+P+S  E++V+DG  +F+V ++  SCSC FWD++EIPCAHA  V+   NL  YAFV  YY++  L +TY G VR 
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI
         GNH ++S V V+ N+LPP+ +R AGRPRK+RI SIGE  ++ KCSRC RVGHN RTC+F PI
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI

TYJ96591.1 uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa]5.5e-4654.6Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        ++++L+SWAE ++RK   +SRSF V+P+S  E++V+DG  +F+V ++  SCSC FWD+EEIPCAHA  V+R  NL  YAFVS YY++  L +TY G VR 
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI
         GNH ++S V V+ N+LPP+ +R AGRPRK+RI SIGE  + +KCSRC R  HN RTC+F PI
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI

TYK03234.1 uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa]2.5e-4655.21Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        ++++L+SWAE ++RK   +SRSF V+P+S  E++V+DG  +F+V ++  SCSC FWD+EEIPCAHA  V+R  NL  YAFVS YY++  L +TY G VR 
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI
         GNH ++S V V+ N+LPP+ +R AGRPRK+RI SIGE  + +KCSRC R GHN RTC+F PI
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]6.0e-6169.94Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        M+ +LTSWAE  LR+QH +SRSF VDPI+NEEYKVIDGDNHF+VN+  +SCSC+ WD+ EIPCAHACAV+ G NL  Y FV DYYF + LLSTYKGSV  
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI
         GNH ++ S++V VN+LPPIVKR  GRPRKQRILSIGE +R +KCSRCHR GHN RTCKFPP+
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]1.4e-5472.6Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        M+T+LTSWAE+ LR QH +SR+F VD I+NEEYKV+DGDNH+VVNV S+SCSC FWD+EEIPCAHACAVL   NL SYAFVSDYYFSN   STYK S+  
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCS
         GNH ++SSV+VD N+LPPIVKRQ GRPRKQRILS+GE R H KCS
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCS

TrEMBL top hitse value%identityAlignment
A0A5A7SST5 MuDRA-like transposase7.7e-4653.99Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        ++++L+SWAE ++RK   +SRSF V+P+S  E++V+DG  +F+V ++  SCSC FWD++EIPCAHA  V+   NL  YAFV  YY++  L +TY G VR 
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI
         GNH ++S V V+ N+LPP+ +R AGRPRK+RI SIGE  ++ KCSRC RVGHN RTC+F PI
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI

A0A5A7V6N4 SWIM-type domain-containing protein1.3e-4554.6Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        ++++L+SWAE ++RK   +SRSF V+P+S  E++V+DG  +F+V ++  SCSC FWD+EEI CAHA  V+R  NL  YAFVS YY++  L +TY G VR 
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI
         GNH ++S V V+ N+LPPI +R  GRPRK+RI SIGE  + +KCSRC R GHN RTC F PI
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI

A0A5D3BD68 SWIM-type domain-containing protein2.7e-4654.6Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        ++++L+SWAE ++RK   +SRSF V+P+S  E++V+DG  +F+V ++  SCSC FWD+EEIPCAHA  V+R  NL  YAFVS YY++  L +TY G VR 
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI
         GNH ++S V V+ N+LPP+ +R AGRPRK+RI SIGE  + +KCSRC R  HN RTC+F PI
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI

A0A5D3BVP4 SWIM-type domain-containing protein1.2e-4655.21Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        ++++L+SWAE ++RK   +SRSF V+P+S  E++V+DG  +F+V ++  SCSC FWD+EEIPCAHA  V+R  NL  YAFVS YY++  L +TY G VR 
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI
         GNH ++S V V+ N+LPP+ +R AGRPRK+RI SIGE  + +KCSRC R GHN RTC+F PI
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI

A0A5D3CZ48 SWIM-type domain-containing protein6.5e-4553.99Show/hide
Query:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL
        ++++L+SWAE ++RK   +SRSF V+P+S  E++V+DG  +F+V ++  SC+C FWD+EEIPCAHA  V+R  NL  YAFVS YY++  L  TY G VRL
Subjt:  MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRL

Query:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI
         GNH ++S V V  N+LP + +R AGRPRK+RI SI E  +  KCSRC R GHN RTC+F PI
Subjt:  AGNHLNFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGACTATTTTGACTAGTTGGGCTGAGGATGTGTTGCGAAAACAACATGGGAAATCACGAAGCTTCACGGTTGATCCTATTAGCAATGAAGAATATAAAGTA
ATTGATGGAGATAATCATTTTGTGGTAAACGTGGATTCTAGATCATGCAGTTGTCAATTTTGGGATGTTGAGGAAATTCCATGTGCTCATGCATGTGCAGTTCTT
CGTGGATTTAATTTGGTTTCTTATGCTTTTGTGTCTGACTATTATTTTTCAAATAGATTGTTATCTACTTATAAAGGTTCAGTCCGTCTAGCGGGAAATCATTTG
AATTTTAGCTCTGTAAATGTTGATGTGAATTTATTACCTCCAATTGTCAAACGTCAAGCAGGAAGGCCTCGAAAACAAAGGATTCTTTCAATTGGTGAAGCAAGA
AGACACACCAAATGTAGTCGTTGTCATCGCGTTGGTCATAATCGTAGGACTTGTAAATTTCCGCCAATTTCACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGACTATTTTGACTAGTTGGGCTGAGGATGTGTTGCGAAAACAACATGGGAAATCACGAAGCTTCACGGTTGATCCTATTAGCAATGAAGAATATAAAGTA
ATTGATGGAGATAATCATTTTGTGGTAAACGTGGATTCTAGATCATGCAGTTGTCAATTTTGGGATGTTGAGGAAATTCCATGTGCTCATGCATGTGCAGTTCTT
CGTGGATTTAATTTGGTTTCTTATGCTTTTGTGTCTGACTATTATTTTTCAAATAGATTGTTATCTACTTATAAAGGTTCAGTCCGTCTAGCGGGAAATCATTTG
AATTTTAGCTCTGTAAATGTTGATGTGAATTTATTACCTCCAATTGTCAAACGTCAAGCAGGAAGGCCTCGAAAACAAAGGATTCTTTCAATTGGTGAAGCAAGA
AGACACACCAAATGTAGTCGTTGTCATCGCGTTGGTCATAATCGTAGGACTTGTAAATTTCCGCCAATTTCACAATGA
Protein sequenceShow/hide protein sequence
MRTILTSWAEDVLRKQHGKSRSFTVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGFNLVSYAFVSDYYFSNRLLSTYKGSVRLAGNHL
NFSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARRHTKCSRCHRVGHNRRTCKFPPISQ