; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy02g009010 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g009010
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase
Genome locationChr02:16111321..16111714
RNA-Seq ExpressionLcy02g009010
SyntenyLcy02g009010
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3468114.1 reverse transcriptase [Gossypium australe]9.0e-0557.89Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        I DN+++ +E+LHT+K ++ G KGW+A+KL+MSKAYDR
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR

KAF7135390.1 hypothetical protein RHSIM_Rhsim08G0109800 [Rhododendron simsii]9.0e-0557.89Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        I D+I++ HE +H++K+RR+G KGW+ALKL+M+KA+DR
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR

KAF7151290.1 hypothetical protein RHSIM_Rhsim02G0086600 [Rhododendron simsii]9.0e-0557.89Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        I D+I++ HE +H++K+RR+G KGW+ALKL+M+KA+DR
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR

XP_030478259.1 uncharacterized protein LOC115695325 [Cannabis sativa]4.0e-0560.53Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        IFDNI++ HE +H I SR++G +GW ALKL+M+KA+DR
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR

XP_030924992.1 uncharacterized protein LOC115952038 [Quercus lobata]9.0e-0565.79Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        I DNI++ HE+LH +KS+RSG +G +ALKL+MSKAYDR
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR

TrEMBL top hitse value%identityAlignment
A0A2I4DEW5 uncharacterized protein LOC1089794645.7e-0568.42Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        I DNIIV  E+LHT+KS+ SG++G++ALKL+MSKAYDR
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR

A0A5B6VG91 Reverse transcriptase4.3e-0557.89Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        I DN+++ +E+LHT+K ++ G KGW+A+KL+MSKAYDR
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR

A0A6P6STD6 uncharacterized protein LOC1136945457.4e-0565.79Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        I DNIIV HE LH +K++R G +G++ALKL+MSKAYDR
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR

A0A803NK25 Uncharacterized protein4.3e-0563.16Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        IFDNII+ +E +H I +R+SG KGW ALKL+M+KA+DR
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR

M5Y120 Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment)5.7e-0553.7Show/hide
Query:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDRGTKTRRPTFTIFISTL
        I DNII   ES+HTI+ RR      + LKL+MSKAYDRG KTR  +F + +S L
Subjt:  IFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDRGTKTRRPTFTIFISTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases1.6e-0450Show/hide
Query:  DNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR
        DNI+   E++H+++ R+ G KGW+ LKL++ KAYDR
Subjt:  DNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCTATATTTGATAACATAATTGTGGGGCATGAAAGTTTGCATACTATCAAATCTAGAAGGTCCGGTCATAAGGGTTGGTTGGCCTTAAAACTGAATATGAGCAAAGCGT
ATGACAGGGGGACTAAGACAAGGCGACCCACTTTCACCATATTTATTTCTACTCTGTTCCGAGGCTCTTTCTTCCATGATAAAAGGGGTTGTGTTCCGAAAACAATTGAC
TGGTATAAAGGCCAACAAGCATTGCCCAGAG
mRNA sequenceShow/hide mRNA sequence
GTCTATATTTGATAACATAATTGTGGGGCATGAAAGTTTGCATACTATCAAATCTAGAAGGTCCGGTCATAAGGGTTGGTTGGCCTTAAAACTGAATATGAGCAAAGCGT
ATGACAGGGGGACTAAGACAAGGCGACCCACTTTCACCATATTTATTTCTACTCTGTTCCGAGGCTCTTTCTTCCATGATAAAAGGGGTTGTGTTCCGAAAACAATTGAC
TGGTATAAAGGCCAACAAGCATTGCCCAGAG
Protein sequenceShow/hide protein sequence
SIFDNIIVGHESLHTIKSRRSGHKGWLALKLNMSKAYDRGTKTRRPTFTIFISTLFRGSFFHDKRGCVPKTIDWYKGQQALPR